Query= MSMg01no543_o02.b1 MSMg01no543_o02.b1 CHROMAT_FILE:
MSMg01no543_o02.b1 PHD_FILE: MSMg01no543_o02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:22 2005
(699 letters)
>mm_chr16_29362079_29363183
Length = 1105
Score = 1263 bits (653), Expect = 0.0
Identities = 687/701 (98%), Gaps = 6/701 (0%)
Strand = Plus / Minus
Query: 5 gaattctctgcatctatgaactaaaattccaacctgttctgcttctgtttttcataccct 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 gaattctctgcagctatgaactaaaattccaacctgttctgcttctgtttttcataccct 746
Query: 65 tgggccttgacactgactgtttataagtgaatcgctgtatattgatcatataatatgtaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgggccttgacactgactgtttataagtgaatcgctgtatattgatcatataatatgtaa 686
Query: 125 gctagcatacttatgttatttgggtctaataaaactgtaatacacagagaggaccaagag 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 gctagcatacttatgttatttgggtctaataaaactgtaatacacagagaggaccaagag 626
Query: 185 ttgcagaagcagagggagtacaggaagaggaagggatcttggaatgttcatacagtgatg 244
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 625 ttgcagaagcagagggagtacaggaagaggaagggatcttggaatgttcaaacagtgatg 566
Query: 245 gacagtgcatgcttctg-----aactagagcatcttcactaatatcaaactaggactgca 299
||||||||| ||||||| || ||||||||||||||||||||||||||||| |||||
Sbjct: 565 gacagtgcacgcttctgaattaaattagagcatcttcactaatatcaaactagggctgca 506
Query: 300 tatctagcaatgtgcacctttccctccatcttctagagcttactctcactgtacagattg 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 tatctagcaatgtgcacctttccctccatcttctagagcttactctcactgtacagattg 446
Query: 360 tgcaagcagatactgccttggctgatcacagcagtcctatactgtgagtcttcctctttg 419
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 445 tgcaagcagatactgccttggctgatcgcagcactcctatactgtgagtcttcctctttg 386
Query: 420 tttcatagaggaatt-tttttactgggatttccctatggtgaatgagttatttgtggtca 478
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttcatagaggaattctttttgctgggatttccctatggtgaatgagttatttgtggtca 326
Query: 479 cacagcccacaattatcagagtagactcaaatgtacatcttatttaaaacacgtgggcca 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cacagcccacaattatcagagtagactcaaatgtacatcttatttaaaacacgtgggcca 266
Query: 539 tttctactctgtttaaggattgctttcaacaacttataatccactactaccttattaagg 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttctactctgtttaaggattgctttcaacaacttataatccactactaccttattaagg 206
Query: 599 gaaaattaatattttttaaaaaggtcatactgatggtgaaaactttccaaataattaaac 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaaaattaatattttttaaaaaggtcatactgatggtgaaaactttccaaataattaaac 146
Query: 659 aaagggattggttatgtaatgcatgatctaaattggcctca 699
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 aaagggattggttatgtaatgcatgatctaaattggcctca 105
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 699
Length of database: 1105
Length adjustment: 10
Effective length of query: 689
Effective length of database: 1095
Effective search space: 754455
Effective search space used: 754455
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no543_o02.g1 MSMg01no543_o02.g1 CHROMAT_FILE:
MSMg01no543_o02.g1 PHD_FILE: MSMg01no543_o02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:22 2005
(669 letters)
>mm_chr16_29176991_29178059
Length = 1069
Score = 1270 bits (657), Expect = 0.0
Identities = 666/669 (99%)
Strand = Plus / Plus
Query: 1 actaaaatcctgattcattttaaatagttccatcttggcagcacaaagtcataggatgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actaaaatcctgattcattttaaatagttccatcttggcagcacaaagtcataggatgtt 260
Query: 61 ggcgcagagaaattctgagagcagttttcccttatcctgtattttaaggattggaaaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ggcgcagagaaattctgagagcagttttcccttatcctgtattttaaggattggaaaagg 320
Query: 121 agcccaagagtaatggagtgtcattgttcttgctgttactgtggttgtggtggttgtctt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agcccaagagtaatggagtgtcattgttcttgctgttactgtggttgtggtggttgtctt 380
Query: 181 gttcgtttgtcttgtttttgttttccaggttccgttggtaagccacagattcaggatttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gttcgtttgtcttgtttttgttttccaggttccgttggtaagccacagattcaggatttg 440
Query: 241 aacatcagctactatttcctgtcctgggcctcatttaaagatctgaaccaaattttagat 300
||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||
Sbjct: 441 aacatcagctactatttcctgtcctgggcctcatttacagatttgaaccaaattttagat 500
Query: 301 attaagctacaagtccaagttgtaggtgaagaggatgccccattgctctatctggagcaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 attaagctacaagtccaagttgtaggtgaagaggatgccccattgctctatctggagcaa 560
Query: 361 taaatgccctccctctctttcgaactacatccttcacacaaaggttctgtgctggatact 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 taaatgccctccctctctttcgaactacatccttcacacaaaggttctgtgctggatact 620
Query: 421 ctggactgagatgcgctggttttcacgagtttcctcatagagagaagtcagcaattgtga 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctggactgagatgcgctggttttcacgagtttcctcatagagagaagtcagcaattgtga 680
Query: 481 agctacacataggccacaatgtgctgttaccatggatcattgttcagtttgttaactttc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 agctacacataggccacaatgtgctgttaccatggatcattgttcagtttgttaactttc 740
Query: 541 actagcttcacatgtacgtatttggtgcctctgttggctgcatggcatcatgcgatggtt 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 actagcttcacatgtacgtatttggtgcctctgttggctgcatggcatcatgcgatggtt 800
Query: 601 aatggagaccagagctaggtatggggaggtgatctgtgcacagactacctggtcccagtc 660
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 801 aatggagaccagagctaggtatggggaggtgatctgtgcacagacaacctggtcccagtc 860
Query: 661 gagcacagg 669
|||||||||
Sbjct: 861 gagcacagg 869
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 669
Length of database: 1069
Length adjustment: 10
Effective length of query: 659
Effective length of database: 1059
Effective search space: 697881
Effective search space used: 697881
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
