Query= MSMg01no543_o09.b1 MSMg01no543_o09.b1 CHROMAT_FILE:
MSMg01no543_o09.b1 PHD_FILE: MSMg01no543_o09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:24 2005
(591 letters)
>mm_chr16_55190353_55191345
Length = 993
Score = 1108 bits (573), Expect = 0.0
Identities = 585/589 (99%), Gaps = 2/589 (0%)
Strand = Plus / Plus
Query: 5 gaattt-aattttcattgcatcctttttgatagtctgacaactttttaaaatgcacttct 63
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaatttaaattttcattgcatcctttttgatagtctgacaactttttaaaatgcacttct 264
Query: 64 tccccaacaactaaaacacaaagccagggcagagggagaaggttgtgttgtcactcattg 123
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 265 tccccaacaactaaaacacaaagccagggcagagagagaaggttgtgttgtcactcattg 324
Query: 124 ctttggaaacacaaaggctgttactggtggcagatggattttttgttctgaagagctcca 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctttggaaacacaaaggctgttactggtggcagatggattttttgttctgaagagctcca 384
Query: 184 tgcctctcctcagcctcctgccagcacaaaattaagtggagctttgataattaaatattt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgcctctcctcagcctcctgccagcacaaaattaagtggagctttgataattaaatattt 444
Query: 244 cagtgaattcagattgtgaaaaaaatctaatttcgaccctggatcatttagcacttattg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagtgaattcagattgtgaaaaaaatctaatttcgaccctggatcatttagcacttattg 504
Query: 304 tccgtgtgagataaaggtagatgctttaatttgaactatgctaatcaactttaaaaagcc 363
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 505 tccgtgtgagataaaggtagatgctttaatttgaactatgctaatcaacattaaaaagcc 564
Query: 364 atttcaggaaacaattgtaaatcctccacaataactcatgccctcaggaataagctggga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 atttcaggaaacaattgtaaatcctccacaataactcatgccctcaggaataagctggga 624
Query: 424 tccctgctttctgggcattattttaccaaatacatgaacaagtgcattgaagtctttcct 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tccctgctttctgggcattattttaccaaatacatgaacaagtgcattgaagtctttcct 684
Query: 484 tgctgttctttactttctatga-tcagttctgtaagagtcacattggattccatatttat 542
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 685 tgctgttctttactttctatgaatcagttctgtaagagtcacattggattccatatttat 744
Query: 543 tggttctattatttcactctctatcaatgggcaatgagtcatagagcaa 591
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tggttctattatttcactctctatcaatgggcaatgagtcatagagcaa 793
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 591
Length of database: 993
Length adjustment: 10
Effective length of query: 581
Effective length of database: 983
Effective search space: 571123
Effective search space used: 571123
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_o09.g1 MSMg01no543_o09.g1 CHROMAT_FILE:
MSMg01no543_o09.g1 PHD_FILE: MSMg01no543_o09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:24 2005
(647 letters)
>mm_chr16_55246749_55247794
Length = 1046
Score = 1143 bits (591), Expect = 0.0
Identities = 633/647 (97%), Gaps = 1/647 (0%)
Strand = Plus / Minus
Query: 1 tagacaaagactgaagctatggaatacatccatgtccttgtttatcattatcaaaaatac 60
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 846 tagacaaatactgaagctatggaatacatccatgtccttgtttatcattatcaaaaatac 787
Query: 61 acacatgaagatgcatcatgtccacaataatcacctaaattggtcaaccatttttgacaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 acacatgaagatgcatcatgtccacaataatcacctaaattggtcaaccatttttgacaa 727
Query: 121 gatggaataactgaataaaagtttttccattttgtcgttttgcattataaggttctagtt 180
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 726 aatggaataactgaataaaagtttttccattttgacgttttgcattataaggttctagtt 667
Query: 181 attgtttaagcttagtacatgagcatactttatttttttcttaaggttaaaagtagagat 240
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 666 attgtttaagcttagtacatgagcatacttt-tttttttcttaaggttaaaagtagagat 608
Query: 241 gtttttcataggacattgatggtatctacctaagtcaaaggcaaagcttaagtgtggaaa 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 gtttttcatagcacattgatggtatctacctaagtcaaaggcaaagcttaagtgtggaaa 548
Query: 301 ggccctgagaaaaaagatgtaggaagaaccattcttcattccatcctcacctggcatgtc 360
||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 547 ggccccgaggaaaaagatgtaggaagaatcattcttcattccatcctcacctggcatgtc 488
Query: 361 taaggaatctcttcacttaattaatcaatgcttattaaacctcaattatttaccatatac 420
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 taagaaatctcttcacttaattaatcaatgcttattaaacctcaattatttaccatatac 428
Query: 421 tgtttgttctagtatgaacaaaggtgagcaaatgtttgacttcatagaacttgtaaaatt 480
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 427 tgtttgttctagtatgaacaaaggtgagcaaatgtctgacttcatagaacttgtaaaatt 368
Query: 481 gatgaaattctatttgcctcaaatttgagttcttaggaaattagttttcctgctaaaaat 540
|||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct: 367 gatgaaattctatttgcctcaaatttaagttcttaggaaattagttttcctgcgaaaaat 308
Query: 541 ccttacatatgaaatgccaaataaaaagatgattttatcaataaaagggattataaatga 600
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ccttacatatgaaatgtcaaataaaaagatgattttatcaataaaagggattataaatgc 248
Query: 601 cagtctgtcttcatttgatttctcttgtttttttcataatttgccac 647
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 cagtctgtcttcatttgatttctcttgtttttttcataatttgccac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 647
Length of database: 1046
Length adjustment: 10
Effective length of query: 637
Effective length of database: 1036
Effective search space: 659932
Effective search space used: 659932
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
