Query= MSMg01no543_p10.b1 MSMg01no543_p10.b1 CHROMAT_FILE:
MSMg01no543_p10.b1 PHD_FILE: MSMg01no543_p10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:29 2005
(627 letters)
>mm_chr16_15557443_15558469
Length = 1027
Score = 1075 bits (556), Expect = 0.0
Identities = 617/655 (94%), Gaps = 28/655 (4%)
Strand = Plus / Plus
Query: 1 ataccttgtctc-anaacatggagggagagagataggaaaggagagtggccaagagggtg 59
|||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 173 ataccttgtctcaaaaacacagagggagagagataggaaaggagagtggccaagagggtg 232
Query: 60 gaaacagggagaggaaaggagacgaaagggagaagagagagagaagaggaagcaggatgg 119
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 233 gaaacagggagaggaaaggagaagaaagggagaagagagagagaagaggaagcaggatgg 292
Query: 120 cgggtagggggagaaactactaaagctagtaagatcatagcatccatattttttttaaaa 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 cgggtagggggagaaactactaaagctagtaagatcatagcatccatattttttttaaaa 352
Query: 180 gctgcatttctatacatttgcagtgtatctaaaatcaattaagaaaataggagttgcaga 239
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 353 gctgcatttctatacatttgcagtgtatctaaagtcaattaagaaaataggagttgcaga 412
Query: 240 gatggctcagaggttaagagcactgtctcagaggtcctgagttcaattcccagcaaccac 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gatggctcagaggttaagagcactgtctcagaggtcctgagttcaattcccagcaaccac 472
Query: 300 ctataatgaaatctggtgccctcttctggcctgcaggcacacatgcaggcagaatgctgt 359
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 473 ctataatgaaatctggtgccctcttctggcctgcaggcacacatgcaggcagaatgctat 532
Query: 360 atacataataaataaataaatatcttttaaatacatatttttaaaaatacaatttgcaat 419
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 533 atacataataaataaataaatatcttttaaatacgtatttttaaaaatacaatttgcaat 592
Query: 420 gataatatcaaaattaataagatctgtgca---------------------------aca 452
|||| ||||||||||||||||||||||||| |||
Sbjct: 593 gatagtatcaaaattaataagatctgtgcaccaggaactgaaatattattgatagaaaca 652
Query: 453 aaggcataaatgagtatccatggatcagaaagttaatactttaaacgtggcagtattctt 512
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 aaggcgtaaatgagtatacatggatcagaaagttaatactttaaacgtggcagtattctt 712
Query: 513 caagctgatctatgatagcacacttctgaaatcctcagcactcaggaggaactagggcta 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 caagctgatctatgatagcacacttctgaaatcctcagcactcaggaggaactagggcta 772
Query: 573 ttgtaagacccttaaaaacacatttttgcaactgccccttttttggttttgtttt 627
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 ttgtaagacccttaaaaacacatttttgcaactgccccttttttggttttgtttt 827
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 627
Length of database: 1027
Length adjustment: 10
Effective length of query: 617
Effective length of database: 1017
Effective search space: 627489
Effective search space used: 627489
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no543_p10.g1 MSMg01no543_p10.g1 CHROMAT_FILE:
MSMg01no543_p10.g1 PHD_FILE: MSMg01no543_p10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:24:29 2005
(579 letters)
>mm_chr16_15619224_15620202
Length = 979
Score = 1038 bits (537), Expect = 0.0
Identities = 566/581 (97%), Gaps = 13/581 (2%)
Strand = Plus / Minus
Query: 1 agcatagcaacacactattggcttactcaaacatcagcag-aaaattacaggtacgtgca 59
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 957 agcatagcaacacactattggcttactcaaacatcagcagaaaaattacaggtacgtgca 898
Query: 60 gggtgtcagagttctgtgagttgttgactcagttcagatag-cctgttatatcctcacat 118
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 897 gggtgtcagagttctgtgagttgttgactcagttcagatagccctgttatatcctcacat 838
Query: 119 tcttctttatctttaaggttaagctgttcccaggaatgttttaactacggggtataccca 178
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 837 tcttctttatctttaaggttaagctgttcccaggaatgttttaactacggggcataccca 778
Query: 179 ggtttgtttttctttttttctcagccccaggcagcctctaggctcacaaaaaacaaaaaa 238
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 777 ggtttgtttttctttttttctcagccccaggcagcctctaggctcacaaaa---aaaaaa 721
Query: 239 acaaaaaaacaaaaacaaaaaaaaaaacagcaatttctgagtactttaaatgacttacaa 298
| ||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 a-aaaaaaa-------aaaaaaaaaaacagcaatttctgagtactttaaatgacttacaa 669
Query: 299 gtcttgaaatttcatctttctttcaattataatctgaagtaggttctaaataagactgtt 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gtcttgaaatttcatctttctttcaattataatctgaagtaggttctaaataagactgtt 609
Query: 359 ccttgaaaatttctctcctcgtatcatctttcttcaaatcaccaggcaaatacaggtgtg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 ccttgaaaatttctctcctcgtatcatctttcttcaaatcaccaggcaaatacaggtgtg 549
Query: 419 cataaagcttagaaacagctaaatcggactggagagatggctcagcagttaaaagctctg 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 548 cataaagcttagaaacagctaaatcggactggagagatggctcagcagttaaaagctctg 489
Query: 479 actgctcttcccgaggacctgtgttcaattcccagcaaccacatggtggctcacaaccat 538
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 488 actgctcttcccgaggacctgagttcaattcccagcaaccacatggtggctcacaaccat 429
Query: 539 ttgcaatggaatcaatgccctcttctggtgtgtctgaagac 579
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 ttgcaatggaatcaatgccctcttctggtgtgtctgaagac 388
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 579
Length of database: 979
Length adjustment: 10
Effective length of query: 569
Effective length of database: 969
Effective search space: 551361
Effective search space used: 551361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
