Query= MSMg01no545_f14.b1 MSMg01no545_f14.b1 CHROMAT_FILE:
MSMg01no545_f14.b1 PHD_FILE: MSMg01no545_f14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:17 2005
(700 letters)
>mm_chr16_12693497_12694596
Length = 1100
Score = 1272 bits (658), Expect = 0.0
Identities = 687/697 (98%), Gaps = 1/697 (0%)
Strand = Plus / Minus
Query: 4 ggaattccctaatgtgctttaaatcaggcctgcaagctcacttggagaccccaccatgct 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 871 ggaattccctaatgtgctttaaatcaggcctgcaagctcacttggagaccccaccatgct 812
Query: 64 ggagttctgcagaataaatccctctttgcatttagatagcatttgaatctgggatatctt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 811 ggagttctgcagaataaatccctctttgcatttagatagcatttgaatctgggatatctt 752
Query: 124 tggggaatcatggactcttacagtgcctgtgtgagtttttaagtgggaatgcaggtgctc 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 tggggaatcatggactcttacagtgcctgtgtgagtttttaagtgggaatgcaggtgctc 692
Query: 184 tcagatggaggtgttggatctcgctggagctggccttgcaggcagttgggagccatcaga 243
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct: 691 tcagatggaggtgttggatcccgctggagctggccttgtaggcagttgggagccatcaga 632
Query: 244 catgcatggtgggatctaaacttgagtcaccgcagagccatctctctggccatctggaga 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 catgcatggtgggatctaaacttgagtcaccgcagagccatctctctggccatctggaga 572
Query: 304 agcagcagaatcttgtggtgtaccttcaggatgaatataggccacccagggtgtattcta 363
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 571 agcagcagaatcttgtggtgtaccttcaggatgaacataggccacccaggctgtattcta 512
Query: 364 gtgcctttgcccatgttccatagcctgtgaaccacacagcttaaataaagaatctttaaa 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 gtgcctttgcccatgttccatagcctgtgaaccacacagcttaaataaagaatctttaaa 452
Query: 424 cagaaacccaagatcaaaggtgagaaccgattggctgacaaaaatcttgtggaccgaggc 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 cagaaacccaagatcaaaggtgagaaccgattggctgacaaaaatcttgtggaccgaggc 392
Query: 484 tgaagagaaccattcagtgtttacctttattttgctgaaaacagtgatttggggtttgct 543
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 tgaagagaaccgttcagcgtttacctttattttgctgaaaacagtgatttggggtttgct 332
Query: 544 gactgtgatcctgtgctcactttttttgaggataacaggaaatggccatgcactgtatca 603
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gactgtgatcctgtgctcac-ttttttgaggataacaggaaatggccatgcactgtatca 273
Query: 604 gatgtggccagatagccacagggaagtgaagcagaagacacagaaaggaggtctgcactt 663
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 272 gatgtggccagatagccacagggaagtgaagcagaagacacagaaagaaggtctgcactt 213
Query: 664 aagcacatgtgaagtangcagcttccagcttgagcaa 700
||||||||||||||| ||||||||||||||||||||
Sbjct: 212 aagcacatgtgaagttggcagcttccagcttgagcaa 176
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 700
Length of database: 1100
Length adjustment: 10
Effective length of query: 690
Effective length of database: 1090
Effective search space: 752100
Effective search space used: 752100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no545_f14.g1 MSMg01no545_f14.g1 CHROMAT_FILE:
MSMg01no545_f14.g1 PHD_FILE: MSMg01no545_f14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:17 2005
(621 letters)
>mm_chr16_12516788_12517808
Length = 1021
Score = 1154 bits (597), Expect = 0.0
Identities = 615/621 (99%)
Strand = Plus / Plus
Query: 1 acattggtttgtgtctgggaaaaaaatgactgacgcacacatctgaacaattcagggctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acattggtttgtgtctgggaaaaaaatgactgacgcacacatctgaacaattcagggctt 260
Query: 61 atgctaacatggagttacgtgggctcggttgcaatgcaatgaataatgaagtgcgggacc 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgctaacatggagttatgtgggctcggttgcaatgcaatgaataatgaagtgcgggacc 320
Query: 121 acatgcattctaattgcctcattgcaggctctgtccctcagctcaaacacagttgaagat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acatgcattctaattgcctcattgcaggctctgtccctcagctcaaacacagttgaagat 380
Query: 181 aaacagtaagcagttcctctgtgacaagaaattacatctgatccctgcttatgttatcag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaacagtaagcagttcctctgtgacaagaaattacatctgatccctgcttatgttatcag 440
Query: 241 gaaagtacatagtaagtgccaaattaatgcttgtttactaaatacaaggatgaatgagct 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caaagtacatagtaagtgccaaattaatgcttgtttactaaatacaaggatgaatgagct 500
Query: 301 gtaaattctactactagatggggacctatatcctccatctctcttctcagtgatgaggct 360
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 501 gtaaattctactactagatggggacctatatcctccatctctcttcttagtgatgaggcc 560
Query: 361 caagggtcaaggggctgactcagcactctccttctctccaggggggcccctgctcccctc 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 561 caagggtcaaggggctgactcagcaccctccttctctccaggggggcccctgctcccctc 620
Query: 421 ccaagggtttgttgcctgaataaagtccagaggatgaggtttggcaagaagatgatgtgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccaagggtttgttgcctgaataaagtccagaggatgaggtttggcaagaagatgatgtgt 680
Query: 481 gtgaacaaaaagaaaagcaggcgggaggcggatgagttcactgcaagttcatgtctgtct 540
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gtgaacaaaaagaaatgcaggcgggaggcggatgagttcactgcaagttcatgtctgtct 740
Query: 541 tattttggaaggaagtgggaaaggagaacaaagttttcgtgaataatgctgcttattaaa 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tattttggaaggaagtgggaaaggagaacaaagttttcgtgaataatgctgcttattaaa 800
Query: 601 atgggctctcttgatctgatg 621
|||||||||||||||||||||
Sbjct: 801 atgggctctcttgatctgatg 821
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space: 617721
Effective search space used: 617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
