Query= MSMg01no545_j14.b1 MSMg01no545_j14.b1 CHROMAT_FILE:
MSMg01no545_j14.b1 PHD_FILE: MSMg01no545_j14.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:37 2005
(645 letters)
>mm_chr16_30467765_30468809
Length = 1045
Score = 1015 bits (525), Expect = 0.0
Identities = 531/533 (99%), Gaps = 1/533 (0%)
Strand = Plus / Minus
Query: 113 cccttctaaacatttatgattattgaaagagtgcctctgtggtaaaacagggttcctagc 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1045 cccttctaaacatttatgattattgaaagagtgcctctgtggtaaaacagggttcctagc 986
Query: 173 caggaggtgcatgcctctgatcccagcacttgagaagcagaggcaggaggatttctgagt 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 985 caggaggtgcatgcctctgatcccagcacttgagaagcagaggcaggaggatttctgagt 926
Query: 233 ttgagaccagtctggtctacagagtgagttccaggacagccaaggttgcacagagaaccc 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 ttgagaccagtctggtctacagagtgagttccaggacagccaaggttgcacagagaaccc 866
Query: 293 tgtcatgaaaaaaaaacaaaacaaaaacaaaaacaaaacatagaattgctgtgagattac 352
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 tgtcatg-aaaaaaaacaaaacaaaaacaaaaacaaaacatagaattgctgtgagattac 807
Query: 353 agataaccttttacccttcttagtcaccacagaaaggaatgtctgtagagacagcctgtc 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 806 agataaccttttacccttcttagtcaccacagaaaggaatgtctgtagagacagcctgtc 747
Query: 413 ttccaaggtagtttgtctcatcttgggcagtttcaggaaggagagaatagatagacacct 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 746 ttccaaggtagtttgtctcatcttgggcagtttcaggaaggagagaatagatagacacct 687
Query: 473 gcacatagacgaccccttctgtctgcaatagtctctccactcccaggctcctcatactgc 532
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 686 gcacatagacgaccccttctgtctgcaatagtctctccattcccaggctcctcatactgc 627
Query: 533 ccgatggagggtcgcagcagccagctttttccccttgcagactctacaatttccctcggg 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ccgatggagggtcgcagcagccagctttttccccttgcagactctacaatttccctcggg 567
Query: 593 agagaggttgcccctcactgtgagcactaatcaacacagtcccatctgttgag 645
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 agagaggttgcccctcactgtgagcactaatcaacacagtcccatctgttgag 514
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space: 657225
Effective search space used: 657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no545_j14.g1 MSMg01no545_j14.g1 CHROMAT_FILE:
MSMg01no545_j14.g1 PHD_FILE: MSMg01no545_j14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:26:37 2005
(609 letters)
>mm_chr16_30297601_30298609
Length = 1009
Score = 978 bits (506), Expect = 0.0
Identities = 593/634 (93%), Gaps = 25/634 (3%)
Strand = Plus / Plus
Query: 1 cagtgccctgcagatttttatgcctagttattgagctgcctagatccctctggtctccct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 cagtgccctgcagatttttatgcctagttattgagctgcctagatccctctggtctccct 252
Query: 61 attgtgtcagcctcagtgacaactaagagccagtgccctaggggt-ggggt---gggggt 116
| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct: 253 actgtgtcagcctcagtgacaactaagagccagtgccctaggggtgggggtggggggggt 312
Query: 117 ctcaggggaggactggatccccagggtcactccatggtagggtgcttggctggctgagtt 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ctcaggggaggactggatccccagggtcactccatggtagggtgcttggctggctgagtt 372
Query: 177 cagaaacacgtctttcaacatttcagaatccagacagagcagccgggcatggtggttcac 236
|||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct: 373 cagaaacatgtctttcaacatttcagaatccagacagagcagctgggcgtggtggttcac 432
Query: 237 gcctttaatcccagcacttgggaggcagagacaggaggatttctgagttcgaggccagcc 296
|||||||||||||||||||||||||||||| |||| |||||||||||||| |||||||||
Sbjct: 433 gcctttaatcccagcacttgggaggcagaggcaggcggatttctgagttcaaggccagcc 492
Query: 297 tggtctacagagtgagttccaggacagccagggctacacagaaaaaccctgtctcgaaaa 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 tggtctacagagtgagttccaggacagccagggctacacagaaaaaccctgtctcgaaaa 552
Query: 357 aaac--cccaaaaaa--caaaaacaaaaacaaaacaaaacaagcaaacaaacaacaaaac 412
||| ||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 553 aaaaaacccaaaaaaaacaaaaacaaaaacaaaacaaaacaaacaaacaaacaacaaaac 612
Query: 413 agaatccagacagagtcactatcccaggaaggtcccaggcaacatgaatacctgcaatgt 472
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 613 agaatccagacagagtcactatcccaggaaggtcccaggcaacatgagcacctgcaatgt 672
Query: 473 gcccctgcagatagtactagagagatgcagcccctggggagcctccctgtgtcccctgg- 531
|||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||
Sbjct: 673 gcccctgcagatagtactagagaggtgcaggccctggggagcctcactgtgtcccctggg 732
Query: 532 ---cc--c-----------atcttccagagctccaaggtcacaaagttccttctatctgc 575
|| | |||||||||| |||| |||||||||||||||||||||||||
Sbjct: 733 tgtccttctgagagggcctatcttccagaactcccaggtcacaaagttccttctatctgc 792
Query: 576 actgtcactacatttgttccaaagacagctgttc 609
||||||||||||||||||||||||||||||||||
Sbjct: 793 actgtcactacatttgttccaaagacagctgttc 826
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space: 598401
Effective search space used: 598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
