XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CACACACTCCAGGCACGAGCTCAAGTCGTTCACAGATAGGCTGACAGGTC
ATGATCACAAGGAACTGTCCAGCTTGGCAGGCAGCCCACACATGCAGCCT
CACTGCGCATGCTCGGGCAAGGCAGTAAATAAGTGGGTTTCACGGGGCCT
GCGGCTGTAAAAAAGAATGTACTTGAAACATTTTCAGGCTACTAGGTGGA
GTTCAAGTCACTGTGTGGAACTTGTATAATCAGAAAAAAAAATTACTGAG
TGATGTGACCAAATCCAGAGACAATTGCCATGTGCTTTTGAAATATATGG
ATCCCTTATTCGATTCGAGGGTTTAACTTGGAGTAACTGTAGAAGCCAGA
GCCACTGGACAAATGACAATAATGTTTTAAGGTGCAGTAATAGTAGGGCA
TTGGTAAAATGGATGTAGAAAGTGGAATACTGTGGGTGGAAATATATATG
CAGAGATAATGTGGGGAGATGAGAGACACACTGAGTCAGGGAGGGAAGGT
TAATTAAAATAAATGATTGTGCAAAGTCCATATATAAACCTACTACTTGT
AAGCTAAATTAAAACTATATATTAAACATTAATGCATTCAAACTGTAGAT
ACGTTGATAGTTGGTAGTTAGAAGCCTCACAACTGAAAGTTAGTAAGAGA
AAATAGATAAGACAATACACAGTAAGTCCT

GCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAAAACTTTTATCATGAAT
GGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCTAACGAGATGATCAT
GTGATTTTTGTCTTTGAGTTTGTTTATATAATGGATTACATTGATGGATT
TTCGTATATTAAACCATCCCTGCATCCCTGGAATAAAACCTACTTGGTCA
GGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAATTTT
ATTGAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAAGTTCT
CTATCTTTGTTGGATCTTTCTGTGGTTTAGGTATCAGAGTAATAGTGGCT
TCATAAAATGAGTTGGGTAGAGTACCTTCTACTTCTATTTTGTGAAATAG
TTTGTGCAGAATTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACTCTG
CACTAAACCCATCTGGTCCTGGGCTTTTTTTGGTTGGGAGACTATTAATA
ACTGCTTCTATTTCTTTAGGTGATATGGGACTGTTTAGATGGTCAACTTG
ATCCTGATTCAACTTTGGTACCTGGTATCTGTCCAGAAATTTGTCCATTT
CATCCAGGTTTTCCAGTTTTGTTGAGTATAGCCTTTTGTAGAAGGATCTG
ATGGTGTTTTGGATTTCTTCAGGATCTGG

Query= MSMg01no546_e10.b1 MSMg01no546_e10.b1 CHROMAT_FILE:
MSMg01no546_e10.b1 PHD_FILE: MSMg01no546_e10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:31 2005
         (690 letters)



>mm_chr16_27586344_27587436
          Length = 1093

 Score = 1199 bits (620), Expect = 0.0
 Identities = 670/688 (97%), Gaps = 6/688 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattc-cacacactccaggcacgagctcaagtcgttcacagataggctgacaggtcatg 63
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 gaattcacacacactccaggcacgagctcaagtcgttcacagataggctgacaggtcatg 263

                                                                       
Query: 64  atcacaaggaactgtccagcttggcaggcagcccacacatgcagcctcactgcgcatgct 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atcacaaggaactgtccagcttggcaggcagcccacacatgcagcctcactgcgcatgct 323

                                                                       
Query: 124 cgggcaaggcagtaaataagtgggtttcacggggcctgcggctgtaaaaaagaatgtact 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 cgggcaaggcagtaaataagtgggtttcacggggcctgcggctgtaaaaaagaatgtact 383

                                                                       
Query: 184 tgaaacattttcaggctactaggtggagttcaagtcactgtgtggaacttgtataatcag 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 tgaaacattttcaggctactaggtggagttcaagtcactgtgtggaacttgtataatcag 443

                                                                       
Query: 244 --aaaaaaaaattactgagtgatgtgaccaaatccagagacaattgccatgtgcttttga 301
             ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct: 444 gaaaaaaaaaattactgagtgatgtgaccaaatccagagtcaaatgccatgtgcttttga 503

                                                                       
Query: 302 aatatatggatcccttattcgattcgagggtttaacttggagtaactgtagaagccagag 361
           |||||||||||||| |||| |||| |||||||||||||||||||||| |||||||||| |
Sbjct: 504 aatatatggatcccatattagatttgagggtttaacttggagtaactttagaagccaggg 563

                                                                       
Query: 362 ccactggacaaatgacaataatgttttaaggtgcagtaatagtagggcattggtaaaatg 421
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 564 ccactggacaaatgacaataatgttt-aaggtgcagtaatagtagggcattggtaaaatg 622

                                                                       
Query: 422 gatgtagaaagtggaatactgtgggtggaaatatatat--gcagagataatgtggggaga 479
           ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 623 gatgtagaaagtggaatactgtgggtggaaatatatatatgcagagataatgtggggaga 682

                                                                       
Query: 480 tgagagacacactgagtcagggagggaaggttaattaaaataaatgattgtgcaaagtcc 539
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 683 tgagagacacactgagtcagggagggaaggttaatcaaaataaatgattgtgcaaagtcc 742

                                                                       
Query: 540 atatataaacctactacttgtaagctaaattaaaactatatattaaacattaatgcattc 599
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 743 atatataagcctactacttgtaagctaaattaaaactatatattaaacattaatggattc 802

                                                                       
Query: 600 aaactgtagatacgttgatagttggtagttagaagcctcacaactgaaagttagtaagag 659
           ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 aaactgtaggtatgttgatagttggtagttagaagcctcacaactgaaagttagtaagag 862

                                       
Query: 660 aaaatagataagacaatacacagtaagt 687
           ||||||||||||||||||||||||||||
Sbjct: 863 aaaatagataagacaatacacagtaagt 890


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 690
Length of database: 1093
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1083
Effective search space:   736440
Effective search space used:   736440
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)