This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
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BAC Information
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Search Parameter
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Search Result
BAC
Clone Name
MSMg01-546E10
Chromosome
16 (Build37)
Map Location
27,586,547 - 27,587,233
singlet/doublet
singlet
Overlap gene
none
Upstream gene
Il1rap
,
Gm606
,
Ostn
,
Uts2d
,
Ccdc50
Downstream gene
Fgf12
Link
Open Mouse BAC browser
Click to get alignment info.
name
Il1rap
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:16180
MGI:104975
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs
name
Gm606
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:239789
MGI:2685452
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Ostn
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:239790
MGI:2677164
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Uts2d
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:224065
MGI:2677064
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Ccdc50
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:67501
MGI:1914751
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs
name
Fgf12
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:14167
MGI:109183
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs
name
Il1rap
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:6680420
GeneID:16180
MGI:104975
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: interleukin 1 receptor accessory protein
transcript_id
: NM_008364.1
name
Il1rap
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:19882202
GeneID:16180
MGI:104975
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: interleukin 1 receptor accessory protein
transcript_id
: NM_134103.1
name
Gm606
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:71274116
GeneID:239789
MGI:2685452
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: gene model 606, (NCBI)
transcript_id
: NM_001013761.1
name
Ostn
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:133892371
GeneID:239790
MGI:2677164
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: osteocrin
transcript_id
: NM_198112.2
name
Uts2d
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:61744465
GeneID:224065
MGI:2677064
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: urotensin 2 domain containing
transcript_id
: NM_198166.3
name
Ccdc50
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:71043974
GeneID:67501
MGI:1914751
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: coiled-coil domain containing 50
transcript_id
: NM_026202.2
name
Ccdc50
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:71043969
GeneID:67501
MGI:1914751
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: coiled-coil domain containing 50
transcript_id
: NM_001025615.1
name
Fgf12
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:118129945
GeneID:14167
MGI:109183
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: fibroblast growth factor 12
transcript_id
: NM_010199.2
name
Fgf12
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:142376333
GeneID:14167
MGI:109183
definition
exception
: mismatches in transcription
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: fibroblast growth factor 12
transcript_id
: NM_183064.2
name
Il1rap
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:6680421
CCDS:CCDS28089.1
GeneID:16180
MGI:104975
definition
GO_component
: GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0004908 - interleukin-1 receptor activity [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IDA]; GO:0004888 - transmembrane receptor activity [Evidence IEA]
GO_process
: GO:0019221 - cytokine and chemokine mediated signaling pathway [Evidence IDA]; GO:0042094 - interleukin-2 biosynthesis [Evidence IDA]
codon_start
: 1
note
: isoform a is encoded by transcript variant 1
product
: interleukin 1 receptor accessory protein isoform a
protein_id
: NP_032390.1
name
Il1rap
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:19882203
GeneID:16180
MGI:104975
definition
GO_component
: GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO_function
: GO:0004908 - interleukin-1 receptor activity [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IDA]; GO:0004888 - transmembrane receptor activity [Evidence IEA]
GO_process
: GO:0019221 - cytokine and chemokine mediated signaling pathway [Evidence IDA]; GO:0042094 - interleukin-2 biosynthesis [Evidence IDA]
codon_start
: 1
note
: isoform b is encoded by transcript variant 2
product
: interleukin 1 receptor accessory protein isoform b
protein_id
: NP_598864.1
name
Gm606
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:71274117
GeneID:239789
MGI:2685452
definition
codon_start
: 1
product
: hypothetical protein LOC239789
protein_id
: NP_001013783.1
name
Ostn
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:37674267
CCDS:CCDS28090.1
GeneID:239790
MGI:2677164
definition
GO_component
: GO:0005615 - extracellular space [Evidence IDA]
GO_function
: GO:0005179 - hormone activity [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]
GO_process
: GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0045668 - negative regulation of osteoblast differentiation [Evidence IDA]; GO:0001503 - ossification [Evidence IEA]; GO:0030500 - regulation of bone mineralization [Evidence IC]
codon_start
: 1
note
: musclin
product
: osteocrin
protein_id
: NP_932780.1
name
Uts2d
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:37718974
CCDS:CCDS28091.1
GeneID:224065
MGI:2677064
definition
GO_component
: GO:0005576 - extracellular region [Evidence IEA]
GO_function
: GO:0005179 - hormone activity [Evidence IEA]
codon_start
: 1
note
: urotensin II-related peptide; urotensin IIB
product
: urotensin 2 domain containing protein
protein_id
: NP_937809.1
name
Ccdc50
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:71043975
GeneID:67501
MGI:1914751
definition
codon_start
: 1
note
: isoform 1 is encoded by transcript variant 1
product
: Ymer protein isoform 1
protein_id
: NP_080478.2
name
Ccdc50
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:71043970
GeneID:67501
MGI:1914751
definition
codon_start
: 1
note
: isoform 2 is encoded by transcript variant 2
product
: Ymer protein isoform 2
protein_id
: NP_001020786.1
name
Fgf12
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:34098929
GeneID:14167
MGI:109183
definition
GO_component
: GO:0005634 - nucleus [Evidence ISS] [Evidence IEA]
GO_function
: GO:0008083 - growth factor activity [Evidence IEA]
codon_start
: 1
note
: isoform b is encoded by transcript variant 2
product
: fibroblast growth factor 12 isoform b
protein_id
: NP_034329.1
name
Fgf12
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:34098966
CCDS:CCDS28092.1
GeneID:14167
MGI:109183
definition
GO_component
: GO:0005634 - nucleus [Evidence ISS] [Evidence IEA]
GO_function
: GO:0008083 - growth factor activity [Evidence IEA]
codon_start
: 1
note
: isoform a is encoded by transcript variant 1
product
: fibroblast growth factor 12 isoform a
protein_id
: NP_898887.1
clone name
MSMg01-394H20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-166I22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-547I05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-376G20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-123N17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-234F18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-184F01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-539J21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-083L15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-165F17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-171L03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-184F02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-280A03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-470A12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-056C15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-056C17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-483A16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-406E15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-517P22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-420E21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-536O24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-523J10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-175K01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-511F08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-178P04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-196I07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-196I08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-196H06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-196I06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-342B06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-072C14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-311G19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-096P16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-294L13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-129H01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-236N18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-112P10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-497E19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-539J10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-515I16
singlet/doublet
singlet
plural/unique
plural
clone name
MSMg01-301I04
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-105D06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-105F06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-528H09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-341H23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-387I06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-319C08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-329B07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-411H07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-205A03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-128C15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-299A22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-148I07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-296N14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-381L13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-320C13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-355K18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-116L16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-116O14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-546E10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-273C23
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-376I04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-131P23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-114A22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-188G13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-434H12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-349B07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-416C16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-469F13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-449P17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-365B19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-432K03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-280M10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-156B05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-273O17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-493E09
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-189M05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-405G12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-349H14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-356E19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-441J19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-417K13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-270E15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-351D02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-340B02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-373C09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-086O19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-369E04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-076N11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-079G12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-436B22
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-454I12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-145P11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-507H16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-151J13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-528O21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-402K12
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-482P08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-113P20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-377F24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-158G15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-278C17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-278K15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-514M15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-202C15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-469E11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-397B02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-525O06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-306F11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-453N05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-475B14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-329D14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-327D10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-385G09
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-267J08
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-091M10
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-091O04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-071A23
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-029C04
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-172I19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-077E11
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-047M19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-120H19
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-001H12
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-239G14
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-131I01
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-068G22
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-016D21
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-177N05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-073G17
singlet/doublet
doublet
plural/unique
unique
clone name
B6Ng01-027O05
singlet/doublet
singlet
plural/unique
unique
clone name
B6Ng01-132E01
singlet/doublet
doublet
plural/unique
unique
clone name
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doublet
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B6Ng01-273G15
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doublet
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clone name
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doublet
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clone name
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doublet
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doublet
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B6Ng01-037I03
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B6Ng01-153L12
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B6Ng01-037G21
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