Query= MSMg01no546_j16.b1 MSMg01no546_j16.b1 CHROMAT_FILE:
MSMg01no546_j16.b1 PHD_FILE: MSMg01no546_j16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:57 2005
(708 letters)
>mm_chr16_76557323_76558430
Length = 1108
Score = 1286 bits (665), Expect = 0.0
Identities = 694/709 (97%), Gaps = 11/709 (1%)
Strand = Plus / Plus
Query: 7 gaattctcttgaatttccaagaa----gaaagaaataatagtgttattcataaatgagtg 62
|||||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct: 207 gaattctcttgaat----aagaaagaagaaagaaataatagtgttattcacaaatgagtg 262
Query: 63 aattatctttattattcaattgttttaatttcactatttattgttcattatttatgtgtt 122
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 263 aattatctttattattaaattgttttaatttcactatttattgttcattatttatttgtt 322
Query: 123 tgttcactcattgttgttatttgagaatacagagcatcaaaactaggaccggggactaac 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgttcactcattgttgttatttgagaatacagagcatcaaaactaggaccggggactaac 382
Query: 183 taggcaaagagtctaacagcgaactaaatgcctagccctcgtttttaaatttgttttaaa 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 taggcaaagagtctaacagcgaactaaatgcctagccctcgtttttaaatttgttttaaa 442
Query: 243 ggaatgtcaatctgtgtagccccagctggcctcaaacccatcattctaagtgccaggatt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 ggaatgtcaatctgtgtagccccagctggcctcaaacccatcattctaagtgccaggatt 502
Query: 303 ataggcatacacttctgtgacgaaagtggagtgtgtttccagctctcccacttagttatt 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ataggcatacacttctgtgacgaaagtggagtgtgtttccagctctcccacttagttatt 562
Query: 363 tatcttgaattcagtcatcacactgtttaggtggctattgttccctctaggcattcccag 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 tatcttgaattcagtcatcacactgtttaggtggctattgttccctctaggcattcccag 622
Query: 423 agagaatgcctacttggtgccaggtcctggttttgaccctctgtattgttaaataacaat 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 agagaatgcctacttggtgccaggtcctggttttgaccctctgtattgttaaataacaat 682
Query: 483 gaatgaatgaatgaatgaatgaatgaatgaatgaatgaacaaacatacaaacaaataaac 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 gaatgaatgaatgaatgaatgaatgaatgaatgaatgaacaaacatacaaacaaataaac 742
Query: 543 aataaatagggacattaaaacaatttggtaataaagataattcactcatttatgaataac 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 aataaatagggacattaaaacaatttggtaataaagataattcactcatttatgaataac 802
Query: 603 acagtcatttctctcttct---ttctggatctgagttagtattgtctagtataaagtata 659
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 803 acagtcatttctctcttctcctttctggatctgagttagtattgtctagtataaagtata 862
Query: 660 ctattatttcttatagaactttatatacagttctagggcagcaagagct 708
||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 863 ctattattttttatagaactttatatacagttctagggcagcaagagct 911
Score = 103 bits (53), Expect = 7e-26
Identities = 97/113 (85%), Gaps = 7/113 (6%)
Strand = Plus / Minus
Query: 26 agaagaaagaaat-aatagtgttattcataaatgagtgaattatctttattattc--aat 82
|||||| |||||| | | |||||||||||||||||||||||||||||||||| | |||
Sbjct: 821 agaagagagaaatgact-gtgttattcataaatgagtgaattatctttatta--ccaaat 765
Query: 83 tgttttaatttcactatttattgttca-ttatttatgtgtttgttcactcatt 134
||||||||| || |||||||||||| | || ||| | |||||||||| |||||
Sbjct: 764 tgttttaatgtccctatttattgtttatttgtttgtatgtttgttcattcatt 712
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 53
Number of extensions: 9
Number of successful extensions: 9
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 2
Length of query: 708
Length of database: 1108
Length adjustment: 10
Effective length of query: 698
Effective length of database: 1098
Effective search space: 766404
Effective search space used: 766404
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no546_j16.g1 MSMg01no546_j16.g1 CHROMAT_FILE:
MSMg01no546_j16.g1 PHD_FILE: MSMg01no546_j16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:27:57 2005
(679 letters)
>mm_chr16_76760272_76761348
Length = 1077
Score = 1183 bits (612), Expect = 0.0
Identities = 652/678 (96%), Gaps = 22/678 (3%)
Strand = Plus / Minus
Query: 2 aatgttttgttcacagataagttcttggcttacagataaaatatatttcaagggtcattt 61
|||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 678 aatg-tttgttcacagataagttcttggcttacagataaaatatatttcaagggccattt 620
Query: 62 ttatgcctaattggtgtataacatccattgaacatcaaaacaaactttacaagtcattaa 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ttatgcctaattggtgtataacatccattgaacatcaaaacaaactttacaagtcattaa 560
Query: 122 atataggcccattaactcctgtagcatgaaggatactgtcaaagctggagtcctggtact 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 atataggcccattaactcctgtagcatgaaggatactgtcaaagctggagtcctggtact 500
Query: 182 caaacaacaacacaaagtcataacttaaggtttccctgcttcaaataaactaaagagata 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 caaacaacaacacaaagtcataacttaaggtttccctgcttcaaataaactaaagagata 440
Query: 242 atgaagtgtgagattctgtccacttaattaacgtgaccaagaatcacaacaggaaaaaaa 301
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 439 atgaagtgtgagattctgtccacttaattaacatgaccaagaatcacaacaggaaaaaaa 380
Query: 302 aatgtagtatatgttcagaacagctatccacatttagcatgagtgtttgcttcttgatgt 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 aatgtagtatatgttcagaacagctatccacatttagcatgagtgtttgcttcttgatgt 320
Query: 362 tactcttctctttaacactaaaacatactcttttgacaacaaaccaaaacccaaacccaa 421
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 319 tactcttctctttaacactaaaacatattcttttgacaacaaaccaaaacc-aaacccaa 261
Query: 422 agcaaactaaagaagcactttagcctgctatgggtatagccttaataaacagaaggccta 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 agcaaactaaagaagcactttagcctgctatgggtatagccttaataaacagaaggccta 201
Query: 482 aaacaaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaac 541
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 aaacaaaaacaaaacaaaacaaaacaaaacaaaacaaaacaaaa---------------- 157
Query: 542 aaaaggtaatgcagttggtgagtttgatgcaactgacacctgatgttattttggttcatt 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 ----ggtaatgcagttggtgagtttgatgcaactgacacctgatgttattttggttcatt 101
Query: 602 ccactttctaaagggaagagcggtctttctcttctatttttaggtctttacataggaatg 661
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 100 ccactttctaaagggaagagcagtctttctcttctatttttaggtctttacataggaatg 41
Query: 662 gctatgatagacctgaaa 679
||||||||||||||||||
Sbjct: 40 gctatgatagacctgaaa 23
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 10
Number of successful extensions: 10
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 679
Length of database: 1077
Length adjustment: 10
Effective length of query: 669
Effective length of database: 1067
Effective search space: 713823
Effective search space used: 713823
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
