BAC Information

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BAC

Clone NameMSMg01-546K06
Chromosome16 (Build37)
Map Location 32,093,456 - 32,094,079
singlet/doubletsinglet
Overlap genePigx
Upstream geneCentb2, Ppp1r2, Apod, 1700007E05Rik, Bdh1, Gm536, Dlg1, Mfi2, LOC677155, Pigz, 0610012G03Rik, Ncbp2, Senp5, Pak2
Downstream gene1500031L02Rik, Lrrc33, Bex6, Fbxo45, Wdr53, 2310010M20Rik, Rnf168, LOC666966, Ubxd7, Tm4sf19, 0610012D17Rik, Pcyt1a, Osta, Zdhhc19, LOC385820, Tfrc, Tnk2, ENSMUSG00000075265, LOC672302, Muc4, Muc20, 1700021K19Rik, Fyttd1, Lrch3, EG625660, Iqcg, Rpl35a, Lmln
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-546K06.T7 (MSMg01no546_k06.b1)MSMg01-546K06.TJ (MSMg01no546_k06.g1)
ACCAG611417AG611418
length726723
length of high quality
(start - end)		685 (42 - 726)624 (71 - 694)
definitionCHROMAT_FILE: MSMg01no546_k06.b1 PHD_FILE: MSMg01no546_k06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:00 2005CHROMAT_FILE: MSMg01no546_k06.g1 PHD_FILE: MSMg01no546_k06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCAACTGAGTGATACTGAATGGCTGAGAAGCACCTGAAAAAAATGTTCA
ACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCTTAAGATTCCA
CCTCACACCAGTCAGAATGGCTGAGATCAAAAACTCAGGTGACAGCAGAT
GCTGGTGAGGATATGGGAACACTCCTCCATTGTTGGTGGTATTGCAAGTT
TGTACAACCACTCTGGAAGTCAGTCTGGAGGTTCCTCAGAAAATTGGACA
TAGTACTACCAGAGGATCCAGCAATACCTCTCCTGGGCATATACCCAGAA
GAAGTTCCAACTGGTAATAAGGACACATGCTCCACTATGTTCATAGCAGC
CTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAACAG
AGGAATGGATACAGAAAATGTGGTACATTTACACAATGGAGTACTACTCA
GCTATTAAAAAGAATGAATTTATGAGATTCCTAGGCAAATGGATATATCT
GGAGGATATCATCCTTAGTGAAGTAACCCAATCACAAAAGGAGTCACTTG
ATATGCACTCACTGATAAGTGGATATTAGCTCAGAAACCTAGAATACCCA
AGATACAATTTGCAAAACACAAGAAAATCAAGAAGAGGGAAGACCAATGG
GTGGATACTTCATTCCTCCTTAGAAN

TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTCTGTAGAACAGGCTGGCCTCCAATTCA
CAGAGATCTACCTGCCTCTGATTAAAGTGCTGGGATTAAAGGCAGGCACT
ACTATCCTTGGCTAAAATAAACTTCTTTAAAAATTAGTTTAAGCCAGGAG
GTTATCTTGAAAAACAAAAATAAAATAAAAAGTTAATTAATTAGTTAATT
AATTAAAATAATAATAAAAATTAGTTTAAAATAGGCTACAAACTGGGGGA
AGAGGGAACGTACCTATAATTTCTGCTCTCGGGCCAATGCAGAAGGATCT
CTGAAACTTTAAACCCAGTTTAGGCTATTTGGTGAGATCTTATCTCAAAA
CAAGCCGAACACCGACATAAAATAAGGTGTGTAATTATCCCAGCTCTCTG
TCCAGAGGCAAATTCTGGACCACAGTGCAGAGGAGACCCAAGTACAGTAT
GGTGCTCTGCTTAAGAAAATAGCGAAACAGGTCATGAGAGACCAGAGCGG
CTGGAAGCCACAGCATTAAGTCCAGAAAAGAGCTTATATTAAAATTAAAT
AAATAAAATTTAAAAATCCAAATAGAAATTCTTGGATGCTAAGATGAAAG
TCCAGAAGCCTGAGCAAAAAAGTGACCAAGGAGCTGGGAACTAAAGCATT
CCAAAACTTCATTCCAGATTAGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no546_k06.g1 MSMg01no546_k06.g1 CHROMAT_FILE:
MSMg01no546_k06.g1 PHD_FILE: MSMg01no546_k06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:00 2005
         (624 letters)



>mm_chr16_32093256_32094279
          Length = 1024

 Score = 1183 bits (612), Expect = 0.0
 Identities = 621/624 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actctgtagaacaggctggcctccaattcacagagatctacctgcctctgattaaagtgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actctgtagaacaggctggcctccaattcacagagatctacctgcctctgattaaagtgc 260

                                                                       
Query: 61  tgggattaaaggcaggcactactatccttggctaaaataaacttctttaaaaattagttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgggattaaaggcaggcactactatccttggctaaaataaacttctttaaaaattagttt 320

                                                                       
Query: 121 aagccaggaggttatcttgaaaaacaaaaataaaataaaaagttaattaattagttaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagccaggaggttatcttgaaaaacaaaaataaaataaaaagttaattaattagttaatt 380

                                                                       
Query: 181 aattaaaataataataaaaattagtttaaaataggctacaaactgggggaagagggaacg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattaaaataataataaaaattagtttaaaataggctacaaactgggggaagagggaacg 440

                                                                       
Query: 241 tacctataatttctgctctcgggccaatgcagaaggatctctgaaactttaaacccagtt 300
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacctataatttctgctcttgggccaatgcagaaggatctctgaaactttaaacccagtt 500

                                                                       
Query: 301 taggctatttggtgagatcttatctcaaaacaagccgaacaccgacataaaataaggtgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 taggctatttggtgagatcttatctcaaaacaagccgaacaccgacataaaataaggtgt 560

                                                                       
Query: 361 gtaattatcccagctctctgtccagaggcaaattctggaccacagtgcagaggagaccca 420
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gtaattgtcccagctctctgtccagaggcaaattctggaccacagtgcagaggagaccca 620

                                                                       
Query: 421 agtacagtatggtgctctgcttaagaaaatagcgaaacaggtcatgagagaccagagcgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtacagtatggtgctctgcttaagaaaatagcgaaacaggtcatgagagaccagagcgg 680

                                                                       
Query: 481 ctggaagccacagcattaagtccagaaaagagcttatattaaaattaaataaataaaatt 540
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctggaagccacggcattaagtccagaaaagagcttatattaaaattaaataaataaaatt 740

                                                                       
Query: 541 taaaaatccaaatagaaattcttggatgctaagatgaaagtccagaagcctgagcaaaaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 taaaaatccaaatagaaattcttggatgctaagatgaaagtccagaagcctgagcaaaaa 800

                                   
Query: 601 agtgaccaaggagctgggaactaa 624
           ||||||||||||||||||||||||
Sbjct: 801 agtgaccaaggagctgggaactaa 824


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 624
Length of database: 1024
Length adjustment: 10
Effective length of query: 614
Effective length of database: 1014
Effective search space:   622596
Effective search space used:   622596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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