Query= MSMg01no546_l18.b1 MSMg01no546_l18.b1 CHROMAT_FILE:
MSMg01no546_l18.b1 PHD_FILE: MSMg01no546_l18.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:07 2005
(657 letters)
>mm_chr16_69652747_69653800
Length = 1054
Score = 1133 bits (586), Expect = 0.0
Identities = 636/654 (97%), Gaps = 5/654 (0%)
Strand = Plus / Minus
Query: 5 gaattcataggataacttaaattactttcaccaattatcaggccttgttgcaagcaagtg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 854 gaattcataggataacttaaattactttcaccaattatcaggccttgttgcaagcaagtg 795
Query: 65 ataatataaataatagtttgttatattcacttatacattgtattttgtttcagtcataaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 794 ataatataaataatagtttgttatattcacttatacattgtattttgtttcagccataaa 735
Query: 125 aaataaacgacgttggatatcactcttattcatcaatgtccttatcctcattagtttctg 184
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 734 aaataaacgacattggatatcactcttattcatcaatgtccttatcctcattagtttatg 675
Query: 185 tgctttatcagtatagaaatgtgcatgaccttcaatagcaccattcatttaaacaatcaa 244
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 674 tgctttatcagtatagaaatgtgcatgaccttcaatagcaccattcatttaaacaatc-a 616
Query: 245 aaaaacttatagaattgctaatgcaataattcggtgatgacatggatgaacctaaatgta 304
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||
Sbjct: 615 aaaaacttatagaattgctaatgcaataattcagtgatgacatagatgaacctaaatcta 556
Query: 305 aaattcccagtcaagcaaggaaatcacatgttc-tttctatttaaattgtaaatgtaaat 363
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 555 aaattcccagtcaagcaaggaaatcacctgttcttttctatttaaattgtaaatgtaaat 496
Query: 364 gcagacaggaaatcactgctttgcgaaactgaaaagtcaacccattgcttttcagcagta 423
||| ||||||||||||||||||| ||||||||||||| || |||||||||||||||||||
Sbjct: 495 gcaaacaggaaatcactgctttgggaaactgaaaagtaaatccattgcttttcagcagta 436
Query: 424 gtgatgattggagcctcgatgaaacttcttcttgttttaacttaggaatacttctcctgc 483
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 435 gtgatgattggagcctcgatgaaa---cttcttgttttaacttaggaatatttctcctgc 379
Query: 484 cggaagtttgaagtttagatattgaaaattcaatccattcaatatgcctatttttgtgtt 543
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 378 cggaagtttgaagtttagatattgaaaattcaatcccttcaatatgcctatttttgtgtt 319
Query: 544 agatacatttaatccaatttgatctgcaccataattcatgatgctctctttagtatatat 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 318 agatacatttaatccaatttgatctgcaccataattcatgatgctctctttagtatatat 259
Query: 604 ttttagcttctttttcaaaagtcaaatggctgtaaggctatcacttacatggga 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 ttttagcttctttttcaaaagtcaaatggctgtaaggctatcacttacatggga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 657
Length of database: 1054
Length adjustment: 10
Effective length of query: 647
Effective length of database: 1044
Effective search space: 675468
Effective search space used: 675468
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no546_l18.g1 MSMg01no546_l18.g1 CHROMAT_FILE:
MSMg01no546_l18.g1 PHD_FILE: MSMg01no546_l18.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:07 2005
(644 letters)
>mm_chr16_69616371_69617417
Length = 1047
Score = 1131 bits (585), Expect = 0.0
Identities = 632/649 (97%), Gaps = 7/649 (1%)
Strand = Plus / Plus
Query: 1 ttagctttggtttggagagaaatgtgtttaataaatttgtcaatataagaatgaagaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttagctttggtttggagagaaatgtgtttaataaatttgtcaatataagaatgaagaaaa 260
Query: 61 aatgaactttctttgtgtaaatttcataatatgctttggatttttgcattactattatag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aatgaactttctttgtgtaaatttcataatatgctttggatttttgcattactattatag 320
Query: 121 attgaagaaccttaattctggaagaggatgat---aaaaaatttgcatga-cataaatct 176
||||||||||||||||||||||||| |||||| |||||| |||||| | |||||||||
Sbjct: 321 attgaagaaccttaattctggaagacgatgatataaaaaaaattgcat-accataaatct 379
Query: 177 tgtgacagtatttcggttatttgagaaatgtgtttcatcatatatagctacaaatagaaa 236
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgtgacagtatttcggttatttgagaaatgtgtttcatcatatatagctacaaatagaaa 439
Query: 237 -ctttactagacaaaacaaattatctctgttcaagttagagtataaccctgccacttgat 295
||| ||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||
Sbjct: 440 tctt-actagacaaaacaaattatctctattctagttagggtataaccctgccacttgat 498
Query: 296 gctttttcctatgagggagaaataaaaaaattaaaacaaaaaatggctcatattcatgat 355
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 499 gctttttcctatgagggagaaatagaaaaattaaaacaaaaaatggctcatattcatgat 558
Query: 356 ataaagaaaataaaaatataagttggcttaaagagtaaaccatcataagactgactatat 415
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ataaagagaataaaaatataagttggcttaaagagtaaaccatcataagactgactatat 618
Query: 416 cgaatgccaaaaattgtactgtgatttcaagtttgtcgtgtcaaaatagtttctattcca 475
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 619 cgaatgccaaaaattgtactgtgatttcaagtttgttgtgtcaaaatagtttctattcca 678
Query: 476 gatgaggacacccatttgatgttaaaatgaagattaacttttatagttttatgtgggaaa 535
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 679 ggtgaggacacccatttgatgttaaaatgcagattaacttttatagttttatgtgggaaa 738
Query: 536 cacattcgtagttatctttggctgttttcttgtttgtgattaatcatgaatgagtctgct 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 739 cacattcgtagttatctttggctgttttcttgtttgtgattaatcatgaatgagtctgct 798
Query: 596 gacatctatctgtctttgttttgagtgaagagatgtgttatatccatcc 644
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 799 gacatctatctgtctttgttttgagtgaagagatgtgttatatccatcc 847
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1047
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1037
Effective search space: 657458
Effective search space used: 657458
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
