BAC Information

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BAC

Clone NameMSMg01-546P20
Chromosome16 (Build37)
Map Location 16,861,836 - 16,862,454
singlet/doubletsinglet
Overlap genenone
Upstream gene2410018G20Rik, Cebpd, 2310008H04Rik, LOC100043266, LOC224010, D16Ertd727e, Pkp2, EG433003, Yars2, Dnm1l, LOC665743, Fgd4, Olfr19, 4933404G15Rik, Spag6, EG665562, EG436405
Downstream geneVpreb1, Top3b, Ppm1f, LOC100042783, EG623519, Mapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3, Gm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl, Aifm3, Lztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4, Smpd4, Pcqap, EG433050, Map1lc3-ps8, EG665892, LOC100042830, Klhl22, Scarf2, Car15, Dgcr2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-546P20.T7 (MSMg01no546_p20.b1)MSMg01-546P20.TJ (MSMg01no546_p20.g1)
ACCAG611683AG611684
length747750
length of high quality
(start - end)		705 (34 - 738)621 (64 - 684)
definitionCHROMAT_FILE: MSMg01no546_p20.b1 PHD_FILE: MSMg01no546_p20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:29 2005CHROMAT_FILE: MSMg01no546_p20.g1 PHD_FILE: MSMg01no546_p20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:28:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGTTC
AGTTCTGAGCCCCATTTTTTAATGGGGTTATTTGATTTTCTGAAGTCCAC
CTTCTTGAGTTCTTTATATATGTTGGATATTAGTCCCCTATCTGATTTAG
GATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGTCTTTTTGTCTTATTG
ACGGTGTCTTTTGCCTTGCAGAAACTTTGGAGTTTCATTAGGTCCCATTT
GTCAATTCTCGATCTTACAGCACAAGCCATTGCTGTTCTGTTCAGGAATT
TTTCCCCTGTACCCATATCTTCAAGGCTTTTCCCCACTTTCTCCTCTATA
AGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGATTT
GACCTTAGTACAAGGAGATAAGTATGGATCGATTCGCATTCTTCTACATG
ATAACAACCAGTTGTGCCAGCACCATTTGTTGAAAATGCTGTCTTTCTTC
CACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAAGTGACCATAGGTGTG
TGGGTTCATTTCTGGGTCTTCAATTCTATTCCATTGGTCTACTTGTCTGT
CTCTATACCAGTACCATGCAGTTTTTATCACAATTGCCCTGTAGTAAAGC
TTTAGGTCAGGCATGGTGATTCCACCATAGGTTCTTTTATCCTTGAGAAG
AGTTTTTGCTATCCTAGGTTTTTTGTTATTCCAGATGAATTTGCAAA

GGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTACTATCTGCCTTTCCTAGCCTTGCAGTCTGAACTG
TAAAGGCAGTAGTAATTCTAAGGTAAATCACAGGGAAAGGCCCTAACAGC
TTCATCTACTCTTCTGAGGCAGATGCCCAAAAAGAGATCAAGGAATGAGA
TTTTTCAGGCCATAGAGACCACTACACCTCAGCATCTAAACTGAGGCCCA
GATGCCCATCCAGACTAAGAAGACCACATAGTAGGTGCAGGGACATGGCT
GGTGCCATGAACCCCACCTTCAAAGATTCAGGCCGCCCTAGATAGAAAAC
CACAGAGGCTGAGAGAGGAATTTGGTTCAATTTAATCTTCTGCTGGCCCA
TGAGGTCACAGAGACACAGAAAAGGCTCAGAGTGATCAGGTTACTAGAAC
CAGGTCCTTCCAGGATGATTACTAGAAAAGAAATGTAGACTGTCTATTGT
TCCTGAGGGCTGGAGCCTGTTGTCTAACTTGTCCATCTTCCTCAAATATC
CTTAGACTTAGATGAGGAATGAAGGAGCAAATGGGGCCAAGTGAAATCAG
GAGTAACCAGAGACTTCCTGGATGGTCAGGGGTTTGCTATCCTTCCTAGA
CTGGGAGATGGAGCCTCAGGAACACAGCCAGTGTAGGTCTTGTGATTACT
GTGGACAAAGCAGTAGGTCCTTAGAGGGGTTGGAGGATTTTTCTGAATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no546_p20.g1 MSMg01no546_p20.g1 CHROMAT_FILE:
MSMg01no546_p20.g1 PHD_FILE: MSMg01no546_p20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:29 2005
         (621 letters)



>mm_chr16_16861636_16862656
          Length = 1021

 Score = 1151 bits (595), Expect = 0.0
 Identities = 613/619 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttactatctgcctttcctagccttgcagtctgaactgtaaaggcagtagtaattctaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 819 ttactatctgcctttcctagccttgcagtctgaactgtaaaggcagtagtaattctaagg 760

                                                                       
Query: 61  taaatcacagggaaaggccctaacagcttcatctactcttctgaggcagatgcccaaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 759 taaatcacagggaaaggccctaacagcttcatctactcttctgaggcagatgcccaaaaa 700

                                                                       
Query: 121 gagatcaaggaatgagatttttcaggccatagagaccactacacctcagcatctaaactg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 699 gagatcaaggaatgagatttttcaggccatagagaccactacacctcagcatctaaaccg 640

                                                                       
Query: 181 aggcccagatgcccatccagactaagaagaccacatagtaggtgcagggacatggctggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 aggcccagatgcccatccagactaagaagaccacatagtaggtgcagggacatggctggt 580

                                                                       
Query: 241 gccatgaaccccaccttcaaagattcaggccgccctagatagaaaaccacagaggctgag 300
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 579 gccatgaaccccaccttcaaagattcaggccaccctagatagaaaaccacagaggctgag 520

                                                                       
Query: 301 agaggaatttggttcaatttaatcttctgctggcccatgaggtcacagagacacagaaaa 360
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 519 agagaaatttggttcaatttaatcttctgctggcccatgaggtcacagagacacacaaaa 460

                                                                       
Query: 361 ggctcagagtgatcaggttactagaaccaggtccttccaggatgattactagaaaagaaa 420
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 459 ggctcagagtgatcaggttactagaaccaggtcctcccaggatgattactagaaaagaaa 400

                                                                       
Query: 421 tgtagactgtctattgttcctgagggctggagcctgttgtctaacttgtccatcttcctc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tgtagactgtctattgttcctgagggctggagcctgttgtctaacttgtccatcttcctc 340

                                                                       
Query: 481 aaatatccttagacttagatgaggaatgaaggagcaaatggggccaagtgaaatcaggag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 aaatatccttagacttagatgaggaatgaaggagcaaatggggccaagtgaaatcaggag 280

                                                                       
Query: 541 taaccagagacttcctggatggtcaggggtttgctatccttcctagactgggagatggag 600
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 279 taaccagagacttcctggatggtcaggggtttgctatccttcctagtctgggagatggag 220

                              
Query: 601 cctcaggaacacagccagt 619
           |||||||||||||||||||
Sbjct: 219 cctcaggaacacagccagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 621
Length of database: 1021
Length adjustment: 10
Effective length of query: 611
Effective length of database: 1011
Effective search space:   617721
Effective search space used:   617721
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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