Query= MSMg01no547_a11.b1 MSMg01no547_a11.b1 CHROMAT_FILE:
MSMg01no547_a11.b1 PHD_FILE: MSMg01no547_a11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:32 2005
(713 letters)
>mm_chr16_37406268_37407380
Length = 1113
Score = 1352 bits (699), Expect = 0.0
Identities = 705/707 (99%)
Strand = Plus / Plus
Query: 7 attcacatcaagattgatcttagaaataagttactaggatgccactgctggtaatagagt 66
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 207 attcacatcaagaatgatcttagaaatgagttactaggatgccactgctggtaatagagt 266
Query: 67 ggattgaaacatgtatttgctatggctacatggggttactagacactgaacataaacctc 126
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 ggattgaaacatgtatttgctatggctacatggggttactagacactgaacataaacctc 326
Query: 127 aatctaattacatcattgtactgattaaaccactgcagtggtttcccactgataatcaga 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aatctaattacatcattgtactgattaaaccactgcagtggtttcccactgataatcaga 386
Query: 187 gtgatgtctgaagactttgccatgtctacaccaccccactgacctggtgttatcatctct 246
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gtgatgtctgaagactttgccatgtctacaccaccccactgacctggtgttatcatctct 446
Query: 247 tcccatcctaactctgttaatttgctctgctcacttagccctctttccatttctttcaac 306
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 tcccatcctaactctgttaatttgctctgctcacttagccctctttccatttctttcaac 506
Query: 307 aacctaagctccttctcactttgcactccttctagtctccagcctctttaaccaggatac 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 aacctaagctccttctcactttgcactccttctagtctccagcctctttaaccaggatac 566
Query: 367 tcattctcttgactaggtagccaacactcaaacacctttcaggcccaggttagcctacct 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 tcattctcttgactaggtagccaacactcaaacacctttcaggcccaggttagcctacct 626
Query: 427 tagcctttcctaattcacaaaggaaataaacacctggcctaagttgctttctattgctgt 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 tagcctttcctaattcacaaaggaaataaacacctggcctaagttgctttctattgctgt 686
Query: 487 gataaacaccatgaccacaagcaacttagggaggaacaagtttgtttggcttataagttc 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 687 gataaacaccatgaccacaagcaacttagggaggaacaagtttgtttggcttataagttc 746
Query: 547 attcacagctaatcattaagggaagtcacacaagtaactaaggcaggaacagaggcagaa 606
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 747 attcacagctaatcattaagggaagtcacacaagtaactaaggcaggaacagaggcagaa 806
Query: 607 accatgaagaaaagtgcttactggcttgtacccctggcttgttccactatttatatcgca 666
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 accatgaagaaaagtgcttactggcttgtacccctggcttgttccactatttatatcgca 866
Query: 667 tcccaggcctcccctgcctagggatggcaccacccacagtaggctgg 713
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 tcccaggcctcccctgcctagggatggcaccacccacagtaggctgg 913
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 713
Length of database: 1113
Length adjustment: 10
Effective length of query: 703
Effective length of database: 1103
Effective search space: 775409
Effective search space used: 775409
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)
| Query= MSMg01no547_a11.g1 MSMg01no547_a11.g1 CHROMAT_FILE:
MSMg01no547_a11.g1 PHD_FILE: MSMg01no547_a11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:28:32 2005
(565 letters)
>mm_chr16_37558654_37559618
Length = 965
Score = 1002 bits (518), Expect = 0.0
Identities = 553/566 (97%), Gaps = 5/566 (0%)
Strand = Plus / Minus
Query: 2 taacactcgtgcctcctcctctcagatatgagatccaggcatgggccacacactcagcac 61
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 908 taacactcgtgcctcctcctctcagatatgagatccaggcatgggccacacgctcagcac 849
Query: 62 aattgcgattcttcttttcttaagcgtgcatttttatgcctgtgcatgtgtgtctctgca 121
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 aattgctattcttctattcttaagcgtgcatttttatgcctgtgcatgtgtgtctctgca 789
Query: 122 cacgtgtgcaggtgcctgtggaggcagagaggatattagagctcctggagcagggattac 181
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 cacatgtgcaggtgcctgtggaggcagagaggatattagagctcctggagcagggattac 729
Query: 182 agacagtggggagctaccatgtgggtgctgagaatcagagctgggtcctgtcccagagca 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 agacagtggggagctaccatgtgggtgctgagaatcagagctgggtcctgtcccagagca 669
Query: 242 gctagtgctctgaacagctgagctgtctctcggcctcttggttactgttctttaatagaa 301
| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gttagtgctctgaacagctgggctgtctctcggcctcttggttactgttctttaatagaa 609
Query: 302 aaacactctcctgtcggtcttttgaataccatcaactcaagagtttaactttgttgttct 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 aaacactctcctgtcggtcttttgaataccatcaactcaagagtttaactttgttgttct 549
Query: 362 ttaaattcattgttctttaaattcattgctagctatgtaagcttgc--cagtttaagaga 419
|||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 548 ttaaattcattgttctttaaattcattgctagctatgtaagcttgcttc--tttaagaga 491
Query: 420 tttggttagctcactgcagtgacacatgctttataagtctacactagggaagctgaggca 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 tttggttagctcactgcagtgacacatgctttataagtctacactagggaagctgaggca 431
Query: 480 ggagagcttgagtttggggctagccaaagcaacacagcaagacactgcctttaagtgcaa 539
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||
Sbjct: 430 ggagagcttgagtttggggctagtcaaagcaacacagcaagacactgccttaaagtgcaa 371
Query: 540 ataaaggggggtgggtaggggggagg 565
|||||||||||| |||||||||||||
Sbjct: 370 ataaaggggggt-ggtaggggggagg 346
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 565
Length of database: 965
Length adjustment: 10
Effective length of query: 555
Effective length of database: 955
Effective search space: 530025
Effective search space used: 530025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
