BAC Information

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BAC

Clone NameMSMg01-547L05
Chromosome16 (Build37)
Map Location 19,831,928 - 19,832,567
singlet/doubletsinglet
Overlap genenone
Upstream geneUfd1l, 2510002D24Rik, Mrpl40, Hira, Igl, Igl-C1, Igl-J1, Igl-C3, Igl-J3p, Igl-J3, Igl-V1, Igl-C4, Igl-J4, Igl-C2, Igl-J2, Igl-V3, Igl-V2, Olfr164, Olfr165, Olfr166, Olfr167, Olfr168, Olfr169, Olfr170, Olfr171, LOC100043444, Lamp3, B3gnt5
Downstream geneLOC100042935, A930003A15Rik, Klhl6, LOC100042938, Klhl24, Yeats2, LOC100043459, Map6d1, Parl, EG224044, Abcc5, Eif2b5, Dvl3, Ap2m1, LOC100042948, Abcf3, BC052055, EG328644, Alg3, 1810009K13Rik, Camk2n2, Ece2, Psmd2, LOC100043475, Eif4g1, 2900046G09Rik, Clcn2, Polr2h, Thpo, Chrd, LOC666255, LOC671504, EG666274
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-547L05.T7 (MSMg01no547_l05.b1)MSMg01-547L05.TJ (MSMg01no547_l05.g1)
ACCAG612225AG612226
length757756
length of high quality
(start - end)		692 (30 - 721)700 (54 - 753)
definitionCHROMAT_FILE: MSMg01no547_l05.b1 PHD_FILE: MSMg01no547_l05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:24 2005CHROMAT_FILE: MSMg01no547_l05.g1 PHD_FILE: MSMg01no547_l05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:29:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCCGCTATACGACTCCTATAGGTTGAGGATCCGCGGAATTCTCTAAGTAC
TGTGGTAGAAACCATGTAGCTTCTGTGGTCACTAGAATTATATATCTATA
TTAATTCATTTATACTAATAGAAAGATTAGAAATAAAAATGATTCTATTG
ATATTTATTGTAAAAATTTAGGGTAAAATTCAATCAGCCAATCAATAGTG
TTTGGTTGTAAGATAAATAGAGGAAAGAAGATTTGGTCTTGTTGGTCTTA
TTTTGAAATCTATGTTAAATTTATAAATTAATTTTGAGAAAATATCATTT
GTGCAAAGATACTTCTAAGTTCTTTAGGACTGCTAGATTTGTTTTTGACA
TAGCTTTGTTCATTTATTGTTTATTTTGAAGCATTTCAATTTTTGTTGTA
ATTATAAATAGAATCTCTACCATTGTACCTTAACTAGTAATTTTATGTTT
GTGCTTTATTATTATGTTTAGATATTGATGTTGTACACATTTAGCAAATA
GCCAACATTTGCTTTATTTTTTAAACTCTGAAACACTGGGACTGCTCAAT
AGTGGTGATGGGGGATTTTCTTCATGAAAACTTGTAGGATCTAATGATTT
TCTTTTTCATCTGAAGTAGTCCTGTTTGAGCTTTTTATTTCTAATGAGGT
CAGTTTTGGTACATTATATTTTGAAGGAAATTATCTATTTATGTCTAACT
TTTTTTTGTTCCCTTTTCTTTTCTCCTTTTGTAGAGCCATGGCTTGGCCT
CCTCATG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXTTCGAATTCTCAGCTGAGAAATAAGAATGGCTGAGAAGCACCTAAAG
AAATATTCAACATCCTTAGTCATCAGGGAAATGAAAATCAAACAACCCTG
AGATTCCACTTCACATCAGTCAGAATGGCTAAGATCTAAAACTCAGGTGA
CATCAGATTCTGGCAAGTATGTACAGAACAGGAAGACTCCTCCACTGCTG
GTGAGATTACAAGCTGGTAAAAATTGCACTCTGGAAATCAGTTTAGTAGT
TCGTCAGAAGATTGGACATAGTACTACCTGAGGACCCAGCTATATCACTC
CTGGGCATATACCCAGAAGATGTTCCAACACATAATAAGGACACATACTC
CACTTTGTTCATAGCAGCCTTATTTATAAAAGCCAGAAGCTGGAAACAAC
CCAGATGTCCCTCAACAGAGGAATGGATACAGAAAACATGATATATCTAA
ACAATGGAATACTACTCAGCTATTAAAAACAATGAATTCATGAAGTTCTT
AGGCAAATGGAAGGAACTGAAAAATATCATCCTGATGAGGTAACCCAATC
ACAAAAGAACACACATGGTATACACTCACTGATAAGTTGATATTAGCCCA
GAAGCTCAGAATACCCAAGATACAATTCACAGACCAAATGAATCTCAAGA
AGAAAGAAGACCAAATTATGAATACTGCAGTCCTTCTTAGAAGGGGGAAC
AAAATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no547_l05.b1 MSMg01no547_l05.b1 CHROMAT_FILE:
MSMg01no547_l05.b1 PHD_FILE: MSMg01no547_l05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:24 2005
         (692 letters)



>mm_chr16_19831472_19832567
          Length = 1096

 Score = 1176 bits (608), Expect = 0.0
 Identities = 631/640 (98%), Gaps = 4/640 (0%)
 Strand = Plus / Minus

                                                                        
Query: 57   aattatatatctatattaattcatttatactaatagaaagattagaaataaaaatgattc 116
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1096 aattatatatctatattaattcatttatactaatagaaagattagaaataaaaatgattc 1037

                                                                        
Query: 117  tattgatatttattgtaaaaatttagggtaaaattcaatcagccaatcaatagtgtttgg 176
            |||||||||||||||||||| |||||||||||||||||||||||||||||| || |||||
Sbjct: 1036 tattgatatttattgtaaaattttagggtaaaattcaatcagccaatcaatggtatttgg 977

                                                                        
Query: 177  ttgtaagataaatagaggaaagaagatttggtcttgttggtcttattttgaaatctatgt 236
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 976  ttgtaagataaatagaggaaagaagatttggtcttgttggtcttattttgaaatctatgt 917

                                                                        
Query: 237  taaatttataaattaattttgagaaaatatcatttgtgcaaagatacttctaagttcttt 296
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916  taaatttataaattaattttgagaaaatatcatttgtgcaaagatacttctaagttcttt 857

                                                                        
Query: 297  aggactgctagatttgtttttgacatagctttgttcatttattgtttattttgaagcatt 356
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856  aggactgctagatttgtttttgacatagctttgttcatttattgtttattttgaagcatt 797

                                                                        
Query: 357  tcaatttttgttgtaattataaatagaatct--ctaccattgtaccttaactagtaattt 414
            |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||
Sbjct: 796  tcaatttttgttgtaattataaatagaatctcactaccattgtaccttaactagtaattt 737

                                                                        
Query: 415  tatgtttgtgctttattattatgtttagatattgatgttgtacacatttagcaaatagcc 474
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736  tatgtttgtgctttattattatgtttagatattgatgttgtacacatttagcaaatagcc 677

                                                                        
Query: 475  aacatttgctttattttttaaactctgaaacactgggactgctcaatagtggtgatgggg 534
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676  aacatttgctttattttttaaactctgaaacactgggactgctcaatagtggtgatgggg 617

                                                                        
Query: 535  gattttcttcatgaaaacttgtaggatctaatgattttctttttcatctgaagtagtcct 594
            ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 616  gattttcttcatgaaaacttgtaggatctaatgattttctttttcatctgaagcagtcct 557

                                                                        
Query: 595  gtttgagctttttatttctaatgaggtcagttttggtacattatattttgaaggaaatta 654
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556  gtttgagctttatatttctaatgaggtcagttttggtacattatattttgaaggaaatta 497

                                                    
Query: 655  tctatttatgtctaac--ttttttttgttcccttttcttt 692
            ||||||||||||||||  ||||||||||||||||||||||
Sbjct: 496  tctatttatgtctaacttttttttttgttcccttttcttt 457


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 692
Length of database: 1096
Length adjustment: 10
Effective length of query: 682
Effective length of database: 1086
Effective search space:   740652
Effective search space used:   740652
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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