Query= MSMg01no547_n24.b1 MSMg01no547_n24.b1 CHROMAT_FILE:
MSMg01no547_n24.b1 PHD_FILE: MSMg01no547_n24.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:37 2005
(601 letters)
>mm_chr16_11972495_11973495
Length = 1001
Score = 1118 bits (578), Expect = 0.0
Identities = 590/594 (99%)
Strand = Plus / Plus
Query: 5 gaattcctaaggttttgaaataagtgattgaaaatctgatctgtttgtaagataagaatc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctaaggttttgaaataagtgattgaaaatctgatctgtttgtaagataagaatc 264
Query: 65 attgttacatgaagtgagatgttttaatggcagagaagataaatcagggcagctcagaat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 attgttacatgaagtgagatgttttaatggcagagaagataaatcagggcagctcagaat 324
Query: 125 aattatcatgttgggtgatggctcggtatacaccggaggatgcttatgaagctagctgaa 184
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 325 aattatcatgttgggtgatggctcggtatacaccggagggtgcttatgaagctagctgaa 384
Query: 185 gaggcagtgtggtgataggtaggtggagtgccaaccaagaatcttctcagtaagggttgg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gaggcagtgtggtgataggtaggtggagtgccaaccaagaatcttctcagtaagggttgg 444
Query: 245 gagatggctcagtggataaagtgctcaccacacaaatgtaaggaccagagcccatgtaaa 304
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct: 445 gagatggctcagtggataaagtgctcgccacacaaatgtaaggaccagagcccacgtaaa 504
Query: 305 gccagatagtaacatatgtctgtagtcccagttcacacaatgagagaaaatcagagaaaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gccagatagtaacatatgtctgtagtcccagttcacacaatgagagaaaatcagagaaaa 564
Query: 365 gaggaccagctatcctagtgtacaaagaagtgaaactcagatggctgtctcaagcaaggc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gaggaccagctatcctagtgtacaaagaagtgaaactcagatggctgtctcaagcaaggc 624
Query: 425 agaacaggaggatgacacctgaagtgctcctctggcctccatacttgcactgtgacacgc 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agaacaggaggatgacacctgaagtgctcctctggcctccatacttgcactgtgacacgc 684
Query: 485 tcatccatactcatactcagcagtacacactcacactgaaactcacactcagtaacacac 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tcatccatactcatactcagcagtacacactcacactgaaactcacactcagtaacacac 744
Query: 545 agacacagataagaccgacacagattccccacccgatccccacagttttttttt 598
|||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 745 agacacagataagaccgacacagattccccacccgagccccacagttttttttt 798
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space: 585681
Effective search space used: 585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no547_n24.g1 MSMg01no547_n24.g1 CHROMAT_FILE:
MSMg01no547_n24.g1 PHD_FILE: MSMg01no547_n24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:29:37 2005
(653 letters)
>mm_chr16_12133137_12134189
Length = 1053
Score = 1189 bits (615), Expect = 0.0
Identities = 645/655 (98%), Gaps = 4/655 (0%)
Strand = Plus / Minus
Query: 1 atcgcaacatgtttattgattagatattggatatgccacacttaaaaatccaagttcctt 60
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 925 atcgcaacatgcttattgattagatattggatatgccacacttaaaaatccaagttcctt 866
Query: 61 ccccattaatttaagacatgaaacctccatggaatgcagaatggtgcacacttttaatcc 120
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 865 ccccattaatttaagacgtgaaacctccatggaatgcagaatggtgcacacttttaatcc 806
Query: 121 cagcactcagaaagcagaagcagatggatctttgtgagttcaaggccagcctggtctata 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 805 cagcactcagaaagcagaagcagatggatctttgtgagttcaagaccagcctggtctata 746
Query: 181 aattgagtccattacagacagggctgttacacagagtaaccctgttttgaaagcacatag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 aattgagtccattacagacagggctgttacacagagtaaccctgttttgaaagcacatag 686
Query: 241 atgaattgtgtgttaaaggctgatgggttttcttgtcccccagtgataaaaatgaaaatg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 atgaattgtgtgttaaaggctgatgggttttcttgtcccccagtgataaaaatgaaaatg 626
Query: 301 ccagaagcaaactctatcatccctctccttagaggtaagttctccatgaaaattgtcaga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccagaagcaaactctatcatccctctccttagaggtaagttctccatgaaaattgtcaga 566
Query: 361 cactcacagaaaattctc-ttcttctccctcacaaggaagtgtttgacaaaccactaaac 419
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cactcacagaaaattc-cgttcttctccctcacaaggaagtgtttgacaaaccactaaac 507
Query: 420 tcagcaagttttctctgccaagaatgaagaaattaaaggattgcatctaaagaggaaggc 479
|||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 506 tcagcaagttttctctgccaagaaggaagaaattaaaggattgcatctaaagacgaaggc 447
Query: 480 ttagaatgaatttcctgaggactactgtgtgccaggccctgactctactgtctgtgtcct 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ttagaatgaatttcctgaggactactgtgtgccaggccctgactctactgtctgtgtcct 387
Query: 540 gtatacattgct-gtttttagaacactctcactcagtaaaacttatgtcttcattttaga 598
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gtatacattg-tagtttttagaacactctcactcagtaaaacttatgtcttcattttaga 328
Query: 599 ggactactccaggacttagagaggctaaatggcttacccaatgacactaagttaa 653
||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 327 ggactactccaggacttagagaggctaaatggcttacccgatgacactaagttaa 273
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
