BAC Information

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BAC

Clone NameMSMg01-548E02
Chromosome16 (Build37)
Map Location 35,982,872 - 35,983,092
singlet/doubletsinglet
Overlap genenone
Upstream geneMylk, Ptplb, Adcy5, Sec22a, Pdia5, Sema5b, EG546663, Dirc2, Hspbap1, Parp14, LOC667133, LOC100043217, Dtx3l, Parp9
Downstream geneKpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta, Stfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105, Stfa2, Stfa3, Casr, EG667232, Cd86, Ildr1, LOC667246, Slc15a2, LOC667023, Eaf2, Iqcb1, LOC628101, Golgb1, Hcls1, Fbxo40
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-548E02.T7 (MSMg01no548_e02.b1)MSMg01-548E02.TJ (MSMg01no548_e02.g1)
ACCAG612646AG612647
length761798
length of high quality
(start - end)
472 (50 - 521)224 (75 - 298)
definitionCHROMAT_FILE: MSMg01no548_e02.b1 PHD_FILE: MSMg01no548_e02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:07 2005CHROMAT_FILE: MSMg01no548_e02.g1 PHD_FILE: MSMg01no548_e02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTGCTTCTCATGTCCATGTACNACTCCTATAGTGCGAGGATCCGCGGAAT
TCTTTGTTTAGCTCTGAGCCCCATCTTTTAAGGGGGTTATTTGATTTTCT
GGAGTCCACCCTCTTGAGTTCTTTATATATATTGGATATTAGTCCCCTAT
CTGATTTAGTATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCTTTTT
GTCTTTTTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAGTTTCATGAG
GTCCCATTTGTCAATCCTCGATCTTACAGTACAAGCCATTGCTGTTCTGT
TCAGGAATTTTTCCCCTGTACCCATATCTTCGAGGCTTTTCCCTACTTTC
TCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCA
CTTAGATTTGACCTTAGTACAAGGAGATAGGAATGGATCAATTCGCATTC
TTCTACATGATAACAGCCAGTTGTGCCAGCACCATTTGTTGAAAATGCTG
TCTTTCTTCCACTGGATGGTTTTAGCTCCCTTGTCCAAAATCAAGTGACC
CATAGGTGTTGTGGGTTCATCTTCTGGGTCTTCAATTCTATTCCATTGGG
TCTACTTGTCTTGTCACTATACCAGGAACCATGCAAGTTTTTTAATCCCC
AATTGCTTCTTTGGTAACAGTCTTTAAGGTTCAGAACTTGTGTGAATCTC
CCCCCAAATGGGTTCTTTCTATCCCCTTGAAAAAAAAGATTTTTGTCTAT
TCCTTAGGCTT
CTATGCTCTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCCTTTCTCCTGCCTCAGACTTCCTAG
AGCTGAAAATACAGGCGTGCGTTACCGTCATGCTAGGCTCAAAAAGCGAT
TTAATGTTATATGATACTAATAAATTACCGGGTAAGATGGGTGAGAACTG
AAGAGAATACCCAGAAGGTTCCTGCAAACGGGTTGCATGTGAATTCTTTG
AACGTGAGACACTGACGTATTTTGTAATACTCCCTCAGCCTCCAACCATG
CCATCATTCATCCAATAAGCATGCTCGGCTGTGAGGTACCTACCATGTGA
GAGGGAAGCTATATTGATGTGAGGGGGAATCCGTCCATTCTGGAAGAGCT
TATTAAGGACATATTTTGTCCCCATAACTTTCTTTTGTCTGCGCTTTTAC
TGACTGTCAACCTGGTCTCTTAGAGACTCACTCCCCTGGCCCGCCACCTT
TTTCCCTGTCCGCCGTCTATCCTAGTGCGTTCCTCGCTTCGGATACTCCT
CTTTCCCTTGCATTCCCTGCTGTTTGGCCGTATTATAAACGCCACCTTAG
TTATTTTCTGGTCCGGTCTTCTTTCTCTTAAGGCCTCTTTGGTGCTATGT
CCTCGCCCCATTCTTGGGTTTTTCCCTTTTTTTTGTCCCCTCCTGCATCA
CTAACTATTACAAGGCCCCTTTGCTTTTTCTTTCTCACTTGTGTCTATCT
TCCTCCCTCGTCTTGTTTTATTAGTGTTTTATTGTCTCCAATAATAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no548_e02.g1 MSMg01no548_e02.g1 CHROMAT_FILE:
MSMg01no548_e02.g1 PHD_FILE: MSMg01no548_e02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:07 2005
         (224 letters)



>mm_chr16_35982669_35983292
          Length = 624

 Score =  420 bits (217), Expect = e-122
 Identities = 220/221 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ttctcctgcctcagacttcctagagctgaaaatacaggcgtgcgttaccgtcatgctagg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ttctcctgcctcagacttcctagagctgaaaatacaggcgtgcgttaccgtcatgctagg 263

                                                                       
Query: 64  ctcaaaaagcgatttaatgttatatgatactaataaattaccgggtaagatgggtgagaa 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctcaaaaagcgatttaatgttatatgatactaataaattaccgggtaagatgggtgagaa 323

                                                                       
Query: 124 ctgaagagaatacccagaaggttcctgcaaacgggttgcatgtgaattctttgaacgtga 183
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ctgaagagaatacccagaaagttcctgcaaacgggttgcatgtgaattctttgaacgtga 383

                                                    
Query: 184 gacactgacgtattttgtaatactccctcagcctccaacca 224
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gacactgacgtattttgtaatactccctcagcctccaacca 424


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 624
Length adjustment: 9
Effective length of query: 215
Effective length of database: 615
Effective search space:   132225
Effective search space used:   132225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)