Query= MSMg01no548_e11.b1 MSMg01no548_e11.b1 CHROMAT_FILE:
MSMg01no548_e11.b1 PHD_FILE: MSMg01no548_e11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:09 2005
(500 letters)
>mm_chr16_6553041_6553939
Length = 899
Score = 953 bits (493), Expect = 0.0
Identities = 496/497 (99%), Gaps = 1/497 (0%)
Strand = Plus / Minus
Query: 4 ggaattcagtttgttaaaagacaaagcatattcctggaatagggaatctagaacattgct 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 699 ggaattcagtttgttaaaagacaaagcatattcctggaatagggaatctagaacattgct 640
Query: 64 caggatctgggttagaagatatgtcctttcttgatttgtagcattaatgattctacttaa 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 639 caggatctgggttagaagatatgtcctttcttgatttgtagcattaatgattctacttaa 580
Query: 124 ccaagggtttgtcagacatcaattttagatcatcataaaatggctgtggggtttgtaaat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 579 ccaagggtttgtcagacatcaattttagatcatcataaaatggctgtggggtttgtaaat 520
Query: 184 acagatatatccagattccaagcttgataacactgagatgcaatatatggtggagcctga 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 acagatatatccagattccaagcttgataacactgagatgcaatatatggtggagcctga 460
Query: 244 tcatcattactgaagtccaagtgtcactcttcttcagcaagtattagtaactggatagat 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tcatcattactgaagtccaagtgtcactcttcttcagcaagtattagtaactggatagat 400
Query: 304 ggtaattaagctagcttccaactcagtagcctataactctcacaataatgtttgatactg 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ggtaattaagctagcttccaactcagtagcctataactctcacaataatgtttgatactg 340
Query: 364 tatttaatagtgaccattatcatggctttgaggtacagaacaatggaattgaatataaga 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tatttaatagtgaccattatcatggctttgaggtacagaacaatggaattgaatataaga 280
Query: 424 tttctcattgtgactttttgacagcttttctataaatggccaggatcttcattaaccaat 483
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 279 tttctcattgtgactttttgacagc-tttctataaatggccaggatcttcattaaccaat 221
Query: 484 gataccactgccaccca 500
|||||||||||||||||
Sbjct: 220 gataccactgccaccca 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 500
Length of database: 899
Length adjustment: 10
Effective length of query: 490
Effective length of database: 889
Effective search space: 435610
Effective search space used: 435610
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no548_e11.g1 MSMg01no548_e11.g1 CHROMAT_FILE:
MSMg01no548_e11.g1 PHD_FILE: MSMg01no548_e11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:09 2005
(539 letters)
>mm_chr16_6428098_6429036
Length = 939
Score = 1036 bits (536), Expect = 0.0
Identities = 538/539 (99%)
Strand = Plus / Plus
Query: 1 acatttgcgactttgagggtccccagggaagacatcttgaagtcaacatcctttcaggca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acatttgcgactttgagggtccccagggaagacatcttgaagtcaacatcctttcaggca 260
Query: 61 tgtagcgcgtaatttgttttgataactacaaacaaaaggggtctattccccaaaggcttc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtagcgcgtaatttgttttgataactacaaacaaaaggggtctattccccaaaggcttc 320
Query: 121 tttggaaattgtcagagcctcttcctcttaatgatatgagctgttcttccaaggggaacc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttggaaattgtcagagcctcttcctcttaatgatatgagctgttcttccaaggggaacc 380
Query: 181 aaaaactggagaggaaggtagatgcgactactgcaaacgccacattggagagtggggaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaaactggagaggaaggtagatgcgactactgcaaacgccacattggagagtggggaca 440
Query: 241 actctgagagccatggtttccaagaacctcaatgaggtgaccttgatctagcaggatcag 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 actctgagagccatggtttccaagaacctcaatgaggtgaccttgatctagcaggatcag 500
Query: 301 tactcacatgggtttctatactgagcaatgctgtaaatgtgttccttccttttattgagt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tactcacatgggtttctatactgagcaatgctgtaaatgtgttccttccttttattgagt 560
Query: 361 ctttcccttcagattgtaagagaaggaatgaacaaattgctggagtggtttctgactaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctttcccttcagattgtaagagaaggaatgaacaaattgctggagtggtttctgactaag 620
Query: 421 ttttaattgtcacaccccanagacacctgagaagggagtttcagttgagggactgcccaa 480
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttttaattgtcacaccccaaagacacctgagaagggagtttcagttgagggactgcccaa 680
Query: 481 ataagattgtcctgtgagcatgtccggaggtgctgtcttgattattaattgatgttggt 539
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ataagattgtcctgtgagcatgtccggaggtgctgtcttgattattaattgatgttggt 739
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 939
Length adjustment: 10
Effective length of query: 529
Effective length of database: 929
Effective search space: 491441
Effective search space used: 491441
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
