Query= MSMg01no548_e15.b1 MSMg01no548_e15.b1 CHROMAT_FILE:
MSMg01no548_e15.b1 PHD_FILE: MSMg01no548_e15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:10 2005
(509 letters)
>mm_chr16_69171474_69172382
Length = 909
Score = 909 bits (470), Expect = 0.0
Identities = 489/500 (97%), Gaps = 8/500 (1%)
Strand = Plus / Minus
Query: 5 gaattcacatcaaacactgagctgttttttgcagtgagccaatttatatatttggaaata 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 gaattcacatcaaacactgagctgttttttgcagtgagccaatttatatatttggaaata 433
Query: 65 atgccataaagtttttaggcactgataatgaaaattatagttaaaataaagtcatatctt 124
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 432 atgccataaagtttttaggcactgatagtgaaaattatagttaaaataaagtcatatctt 373
Query: 125 ttaagataatgtttacaataattttatataattatagctaaaatacctcacccaatgata 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 ttaagataatgtttacaataattttatataattatagctaaaatacctcacccaatgata 313
Query: 185 tatattgccccaaacctcttacagtcagaagtaagtcagtagccaaatatatatacatat 244
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 312 tatattgccccaaacctcttacagtcagaagtaagtcagtagccaaacatatatacatat 253
Query: 245 ttcctacattttcatatatgtcacattcatatttcttttcatttaagaatatatatatat 304
|||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 252 ttcctatattttcatatatgtcacattcatatttcttttcatttaaga--------atat 201
Query: 305 atatatatatatatatatatatatatatacttttgataaggcaacatgttacaaagtcaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 atatatatatatatatatatatatatatacttttgataaggcaacatgttacaaagtcaa 141
Query: 365 gtgctagagaaaaggtctaggtattagctaaaatgatacattaaaaataattttaaaatg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 gtgctagagaaaaggtctaggtattagctaaaatgatacattaaaaataattttaaaatg 81
Query: 425 ttgaaatatgttaggaatagattcactaattgaaagcatctaaaattataaatttaaaga 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80 ttgaaatatgttaggaatagattcactaattgaaagcatctaaaattataaatttaaaga 21
Query: 485 aaacccagacgtcaaatata 504
||||||||||||||||||||
Sbjct: 20 aaacccagacgtcaaatata 1
Score = 64.5 bits (33), Expect = 2e-14
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 294 tatatatatatatatatatatatatatatatat 326
|||||||||||||||||||||||||||||||||
Sbjct: 172 tatatatatatatatatatatatatatatatat 204
Score = 64.5 bits (33), Expect = 2e-14
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 296 tatatatatatatatatatatatatatatatat 328
|||||||||||||||||||||||||||||||||
Sbjct: 172 tatatatatatatatatatatatatatatatat 204
Score = 64.5 bits (33), Expect = 2e-14
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 298 tatatatatatatatatatatatatatatatat 330
|||||||||||||||||||||||||||||||||
Sbjct: 172 tatatatatatatatatatatatatatatatat 204
Score = 64.5 bits (33), Expect = 2e-14
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 300 tatatatatatatatatatatatatatatatat 332
|||||||||||||||||||||||||||||||||
Sbjct: 172 tatatatatatatatatatatatatatatatat 204
Score = 62.6 bits (32), Expect = 6e-14
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 302 tatatatatatatatatatatatatatatata 333
||||||||||||||||||||||||||||||||
Sbjct: 172 tatatatatatatatatatatatatatatata 203
Score = 62.6 bits (32), Expect = 6e-14
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 293 atatatatatatatatatatatatatatatat 324
||||||||||||||||||||||||||||||||
Sbjct: 173 atatatatatatatatatatatatatatatat 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 62
Number of extensions: 19
Number of successful extensions: 19
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 7
Length of query: 509
Length of database: 909
Length adjustment: 10
Effective length of query: 499
Effective length of database: 899
Effective search space: 448601
Effective search space used: 448601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no548_e15.g1 MSMg01no548_e15.g1 CHROMAT_FILE:
MSMg01no548_e15.g1 PHD_FILE: MSMg01no548_e15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:10 2005
(366 letters)
>mm_chr16_69035389_69036154
Length = 766
Score = 698 bits (361), Expect = 0.0
Identities = 364/365 (99%)
Strand = Plus / Plus
Query: 1 attagtaattgaagcaaaagcttccccaaggtagtcatagaaatagggaccacatgcaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attagtaattgaagcaaaagcttccccaaggtagtcatagaaatagggaccacatgcaag 260
Query: 61 gcattaggggatgaagtgctaataaagacattgcctttcaccgtttgtgttcatgagatt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcattaggggatgaagtgctaataaagacattgcctttcaccgtttgtgttcatgagatt 320
Query: 121 tgtgataaaagaagggaaataggctgcagcactctgaattctcgttccatgggaaagaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtgataaaagaagggaaataggctgcagcactctgaattctcgttccatgggaaagaag 380
Query: 181 aagagcaggtttgacttaagaaaaatagcactaacatgggatagaggttgtaggaaaaca 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aagagcaggtctgacttaagaaaaatagcactaacatgggatagaggttgtaggaaaaca 440
Query: 241 aggctcgtacagggagccaaaagagaacagaagcagtattttaaagcattcaaaagaata 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aggctcgtacagggagccaaaagagaacagaagcagtattttaaagcattcaaaagaata 500
Query: 301 aaatcatatcaaactgaatacatcccctagtagaaaggaaaattcaaagataaccatata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaatcatatcaaactgaatacatcccctagtagaaaggaaaattcaaagataaccatata 560
Query: 361 ttttt 365
|||||
Sbjct: 561 ttttt 565
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space: 270249
Effective search space used: 270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
