MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-548M15
Chromosome	16 (Build37)
Map Location	90,372,651 - 90,373,117
singlet/doublet	singlet
Overlap gene	none
Upstream gene	LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik, Tiam1, LOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175
Downstream gene	Hunk, 2610039C10Rik, Mrap, 4921511H13Rik, 4931408A02Rik, LOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik, H3f3a-ps2, Olig2, Olig1
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC100040456 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040456
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins

name	Krtap21-1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73716 MGI:1920966
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Krtap6-2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16701 MGI:1330280
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	5430433J05Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71363 MGI:1918613
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs

name	Tiam1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:21844 MGI:103306
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040496 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040496
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 24 ESTs, 1 Protein pseudo : _no_value

name	LOC640694 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:640694
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 Proteins pseudo : _no_value

name	LOC100040440 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040440
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 1 Protein pseudo : _no_value

name	Sod1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20655 MGI:98351
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sfrs15 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:224432 MGI:2146350
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC545175 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:545175
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 66 ESTs, 1 Protein

name	Hunk (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:26559 MGI:1347352
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2610039C10Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66578 MGI:1913828
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Mrap (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:77037 MGI:1924287
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4921511H13Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:207932 MGI:2146468
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 101 ESTs, 4 Proteins

name	4931408A02Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70967 MGI:1918217
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC665863 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665863
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	1110004E09Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68001 MGI:1915251
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4930534H18Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68174 MGI:1915424
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 5 ESTs

name	Synj1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:104015 MGI:1354961
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 227 ESTs, 6 Proteins

name	1810007M14Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67367 MGI:1914617
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 92 ESTs, 5 Proteins

name	4932438H23Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74387 MGI:1921637
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	H3f3a-ps2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15080 MGI:1101758
definition	gene_synonym : MH-921 note : H3 histone, family 3A, pseudogene 2 pseudo : _no_value

name	Olig2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:50913 MGI:1355331
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Olig1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:50914 MGI:1355334
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040456 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149268181 GeneID:100040456
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins product : similar to keratin associated protein 21-1 transcript_id : XM_001474418.1

name	Krtap21-1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802943 GeneID:73716 MGI:1920966
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : keratin associated protein 21-1 transcript_id : NM_028621.2

name	Krtap6-2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:113195693 GeneID:16701 MGI:1330280
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : keratin associated protein 6-2 transcript_id : NM_010673.2

name	5430433J05Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149268183 GeneID:71363 MGI:1918613
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 2 ESTs product : RIKEN cDNA 5430433J05 gene transcript_id : XM_001474473.1

name	Tiam1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142372435 GeneID:21844 MGI:103306
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : T-cell lymphoma invasion and metastasis 1 transcript_id : NM_009384.2

name	Sod1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:45597446 GeneID:20655 MGI:98351
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : superoxide dismutase 1, soluble transcript_id : NM_011434.1

name	Sfrs15 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:109150408 GeneID:224432 MGI:2146350
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : splicing factor, arginine/serine-rich 15 transcript_id : NM_178923.3

name	LOC545175 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149268190 GeneID:545175
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 66 ESTs, 1 Protein product : similar to LOC635138 protein transcript_id : XM_001474656.1

name	Hunk (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118131024 GeneID:26559 MGI:1347352
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : hormonally upregulated Neu-associated kinase transcript_id : NM_015755.2

name	2610039C10Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70909368 GeneID:66578 MGI:1913828
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2610039C10 gene transcript_id : NM_025642.1

name	Mrap (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142376890 GeneID:77037 MGI:1924287
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : melanocortin 2 receptor accessory protein transcript_id : NM_029844.2

name	4921511H13Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149268185 GeneID:207932 MGI:2146468
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 101 ESTs, 4 Proteins product : RIKEN cDNA 4921511H13 gene transcript_id : XM_489612.5

name	4931408A02Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110625808 GeneID:70967 MGI:1918217
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4931408A02 gene transcript_id : NM_027627.1

name	1110004E09Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:23956185 GeneID:68001 MGI:1915251
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 1110004E09 gene transcript_id : NM_026502.1

name	4930534H18Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149268193 GeneID:68174 MGI:1915424
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 5 ESTs product : RIKEN cDNA 4930534H18 gene transcript_id : XM_001474847.1

name	Synj1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149268188 GeneID:104015 MGI:1354961
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 227 ESTs, 6 Proteins product : synaptojanin 1 transcript_id : XM_001481287.1

name	1810007M14Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94400755 GeneID:67367 MGI:1914617
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 92 ESTs, 5 Proteins product : RIKEN cDNA 1810007M14 gene, transcript variant 1 transcript_id : XM_358888.5

name	4932438H23Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802533 GeneID:74387 MGI:1921637
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4932438H23 gene transcript_id : NM_028905.2

name	Olig2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:59858556 GeneID:50913 MGI:1355331
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : oligodendrocyte transcription factor 2 transcript_id : NM_016967.2

name	Olig1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:59894798 GeneID:50914 MGI:1355334
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : oligodendrocyte transcription factor 1 transcript_id : NM_016968.4

name	LOC100040456 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149268182 GeneID:100040456
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474468.1

name	Krtap21-1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27229158 CCDS:CCDS28311.1 GeneID:73716 MGI:1920966
definition	codon_start : 1 exception : mismatches in translation product : keratin associated protein 21-1 protein_id : NP_082897.1

name	Krtap6-2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:113195694 GeneID:16701 MGI:1330280
definition	GO_component : GO:0005882 - intermediate filament [Evidence IEA] codon_start : 1 note : keratin-associated protein 6.2; keratin-associated protein 6-2 product : keratin associated protein 6-2 protein_id : NP_034803.2

name	5430433J05Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149268184 GeneID:71363 MGI:1918613
definition	codon_start : 1 product : hypothetical protein LOC71363 protein_id : XP_001474523.1

name	Tiam1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678351 CCDS:CCDS28314.1 GeneID:21844 MGI:103306
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IDA] GO_function : GO:0046875 - ephrin receptor binding [Evidence IPI]; GO:0005085 - guanyl-nucleotide exchange factor activity [Evidence IDA]; GO:0005543 - phospholipid binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IEA]; GO:0005057 - receptor signaling protein activity [Evidence IEA]; GO:0005089 - Rho guanyl-nucleotide exchange factor activity [Evidence IEA] GO_process : GO:0048013 - ephrin receptor signaling pathway [Evidence IDA]; GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0050772 - positive regulation of axonogenesis [Evidence IMP]; GO:0035023 - regulation of Rho protein signal transduction [Evidence IEA]; GO:0007165 - signal transduction [Evidence IEA]; GO:0007264 - small GTPase mediated signal transduction [Evidence IDA] codon_start : 1 exception : mismatches in translation product : T-cell lymphoma invasion and metastasis 1 protein_id : NP_033410.1

name	Sod1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:45597447 GeneID:20655 MGI:98351
definition	EC_number : 1.15.1.1 GO_component : GO:0005737 - cytoplasm [Evidence TAS]; GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0016209 - antioxidant activity [Evidence IEA]; GO:0005507 - copper ion binding [Evidence IEA]; GO:0004785 - copper, zinc superoxide dismutase activity [Evidence IDA] [Evidence TAS]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0004784 - superoxide dismutase activity [Evidence IDA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0000187 - activation of MAPK activity [Evidence IDA]; GO:0006309 - DNA fragmentation during apoptosis [Evidence IDA]; GO:0019430 - removal of superoxide radicals [Evidence TAS]; GO:0006979 - response to oxidative stress [Evidence IDA]; GO:0006801 - superoxide metabolism [Evidence IEA]; GO:0042554 - superoxide release [Evidence IDA] codon_start : 1 note : Cu(2+)-Zn2+ superoxide dismutase product : superoxide dismutase 1, soluble protein_id : NP_035564.1

name	Sfrs15 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:109150409 GeneID:224432 MGI:2146350
definition	GO_function : GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] codon_start : 1 note : CTD-binding SR-like protein RA4 product : splicing factor, arginine/serine-rich 15 protein_id : NP_849254.2

name	LOC545175 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149268191 GeneID:545175
definition	codon_start : 1 product : similar to LOC635138 protein protein_id : XP_001474706.1

name	Hunk (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7657216 CCDS:CCDS28315.1 GeneID:26559 MGI:1347352
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IDA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0006468 - protein amino acid phosphorylation [Evidence IEA] [Evidence IDA] codon_start : 1 product : hormonally upregulated Neu-associated kinase protein_id : NP_056570.1

name	2610039C10Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70909369 CCDS:CCDS28316.1 GeneID:66578 MGI:1913828
definition	codon_start : 1 product : 2610039C10Rik protein protein_id : NP_079918.1

name	Mrap (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27229245 CCDS:CCDS28317.1 GeneID:77037 MGI:1924287
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : fat cell-specific low molecular weight protein protein_id : NP_084120.1

name	4921511H13Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149268186 GeneID:207932 MGI:2146468
definition	codon_start : 1 product : hypothetical protein LOC207932 protein_id : XP_489612.5

name	4931408A02Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110625809 CCDS:CCDS28319.1 GeneID:70967 MGI:1918217
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005529 - sugar binding [Evidence IEA] codon_start : 1 product : hypothetical protein LOC70967 protein_id : NP_081903.1

name	1110004E09Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23956186 CCDS:CCDS28321.1 GeneID:68001 MGI:1915251
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC68001 protein_id : NP_080778.1

name	4930534H18Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149268194 GeneID:68174 MGI:1915424
definition	codon_start : 1 product : hypothetical protein LOC68174 protein_id : XP_001474897.1

name	Synj1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149268189 GeneID:104015 MGI:1354961
definition	codon_start : 1 note : overriding stop codons product : similar to mKIAA0910 protein protein_id : XP_001481337.1 transl_except : (pos:complement(90940721..90940723),aa:OTHER)

name	1810007M14Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149268197 GeneID:67367 MGI:1914617
definition	codon_start : 1 product : GC-rich sequence DNA-binding factor candidate isoform 1 protein_id : XP_358888.5

name	4932438H23Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19920334 CCDS:CCDS28322.1 GeneID:74387 MGI:1921637
definition	codon_start : 1 product : hypothetical protein LOC74387 protein_id : NP_083181.1

name	Olig2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:59858557 CCDS:CCDS28323.1 GeneID:50913 MGI:1355331
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA]; GO:0005667 - transcription factor complex [Evidence ISS] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0042803 - protein homodimerization activity [Evidence IPI]; GO:0003705 - RNA polymerase II transcription factor activity, enhancer binding [Evidence IDA]; GO:0003700 - transcription factor activity [Evidence ISS] [Evidence IDA]; GO:0030528 - transcription regulator activity [Evidence IEA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0042552 - myelination [Evidence IMP]; GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0007399 - nervous system development [Evidence IDA]; GO:0048663 - neuron fate commitment [Evidence IMP]; GO:0048709 - oligodendrocyte differentiation [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence ISS] [Evidence IDA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : oligodendrocyte transcription factor 2 protein_id : NP_058663.2

name	Olig1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:59858559 CCDS:CCDS28324.1 GeneID:50914 MGI:1355334
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence ISS] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence ISS]; GO:0030528 - transcription regulator activity [Evidence IEA] GO_process : GO:0007275 - development [Evidence IEA]; GO:0048663 - neuron fate commitment [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence ISS] [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : oligodendrocyte transcription factor 1 protein_id : NP_058664.2

name	LOC640694 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:640694
definition	number : 1 pseudo : _no_value

name	LOC640694 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:640694
definition	number : 2 pseudo : _no_value

name	LOC665863 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665863
definition	number : 1 pseudo : _no_value

name	LOC665863 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:665863
definition	number : 2 pseudo : _no_value

name	LOC100040496 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149268187 GeneID:100040496
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 24 ESTs, 1 Protein product : similar to myosin regulatory light chain-like pseudo : _no_value transcript_id : XR_031827.1

name	LOC100040440 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149268178 GeneID:100040440
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 1 Protein product : similar to Rpl7a protein pseudo : _no_value transcript_id : XR_031873.1

clone name	MSMg01-132P05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-518O09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-373H05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-464A06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-516E06
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-538C23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-108A24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-421B20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-396A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-484F18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-100E21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-513F02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-506I06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-365F15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-232H02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-146L20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-069M01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-446H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-068E19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-308J22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-470A02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-535C22
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-364J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-498O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-469D10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-491J12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-306E01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-493G06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-371D01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-405C10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-453F22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-489C13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-487F17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-265J15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-155D01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-307M09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-317B02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-517M09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-448I05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-412K12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-521C06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-433C04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-293N24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-082O12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-321J24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-134N13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-134N12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-548M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-444H19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-137D04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-056N03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-547C22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-319K16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-343N11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-076C06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-464A01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-457M23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-270I08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-105D24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-541P12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-141A12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-388G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-376L18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-531E18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-346B05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-412J20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-218I20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-533D10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478D10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-494N07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-109B18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-447B13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-139F02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-356H21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-276O12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-369H02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-376F16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-427D04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-072C03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-380L17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-051P11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-050G10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-362L08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-354H16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-445B05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-446J20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-532E17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-266P24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-050G11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-345C20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-019M06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043O10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-197N07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-095D24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-166G17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-080N16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184K15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-057N16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060H12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091B07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-244F15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-348F10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-323L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345J13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-226M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-097P05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-119N22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152P16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-088P07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-118G13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-147C14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-216P06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-085F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034M21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-182A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065J20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-065L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-276J02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-269K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032C24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-172M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258D07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-247C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-198A02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-264D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239I08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323B21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-124B18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-305I23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-018B07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-253A13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217I22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-195C15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-134J17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226H16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116J17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-160A13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-336P07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-259P04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307H12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-187E01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-198C09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-238O22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163F11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-324G11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-016H13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-111B08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179F15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-340N19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-209F19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-092F12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320O23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271P01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-198F12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-318J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-032I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-060H09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039K10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-145J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-148E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170J11
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-184D16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-270M14
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-548M15.T7 (MSMg01no548_m15.b1)	MSMg01-548M15.TJ (MSMg01no548_m15.g1)
ACC	AG613053	AG613054
length	743	727
length of high quality (start - end)	470 (49 - 518)	632 (79 - 710)
definition	CHROMAT_FILE: MSMg01no548_m15.b1 PHD_FILE: MSMg01no548_m15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:48 2005	CHROMAT_FILE: MSMg01no548_m15.g1 PHD_FILE: MSMg01no548_m15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 21:30:48 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	NAACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG CGGAATTCAGAAAATGGGGTTTTTTTTTTGTAAAATTATTAAGGCTTGCA GAACACTGTCTTATTTTTATGCGTACAGCATGGTATCACATGGAAACTAA AACTTGAATTTTTTTTCTCTGTTTGGCTTTTGTTCAAGTGAGTTTGTGAC TCGGGGTGACATGTGGCTGTCACGACTCTTGCCGCACAATGTTCTTCGCT CCTCGAGACTGAGACGAATTGGTTTGCAGCGGGATTCAATTCCTATGGGC ACGCACACTTCATTTTCAAATCTGAACACTTCCACAGTGAAGTGATATTT TTAGAAACCCTTCTGATCTGTCTTTTCAGTTGTACTGATCTTGTTGAAAT GCCAACTATAACAAAGCTAAAATCATAAAGGTAAATATTTAGAACGAAGA ACACATTTATGCCTGATTTTTTAAAAAGTTAAATTTAAGATCTATGAGAA GAACAAGAGCACTGTAGAATGTTCAGTTTTGGTTCCTTAGAAATGAAAAA AAAAACATATTGTGAGATATATATACAAGACTATATACAGACATAAGACC TTGTAAATGTGTTCATTTTTTAAACCCAGCATTTTTTAGTTCTAGGAACT TATACTTTTAAAGAATCCCCTGTGACACGTGTGAAGGAGCAAAATTAACG GTCTCAGTGGGCAAGGAACCCCCCTTGGTATGAAGCAAAGGCC	NACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXATAGCCACTGTGGCTCAAGATC TTCAAACCAAGATCCAGATAAGGATCTCCAAGCCTCCAGATAAGGGTCAC TGGTGAGCCTTCCAATTCCGGATTGTAATTCATTCCAAATATTGTCAAGT TGACAACCAGGAATAGCCACTACAATGGGCAACTATGTTTGTTGAGTAAT TATCAAAATTAGACTTCCAACCTCTCAGGGTTCTGGAGACTGAGGCCTTA TTTCCTAAGAATGGCTCTCAGGTCCTTGAGAGATGCTTCAAGACACACAG TTGCAACTGTCAGCCCTTCTTTAGGCAAATGTCGGGGAGACAGATGTGGC CCATGGAGCAAGGACTGGGTTTGAGTGGACTGAGGAAGACCTGACTTGCC CCAGATGATGTGGAGTCAAGACTTTCTGTGTTTACTGAAGGTAGAGTTTC ACACCCAGCAGAATGGTATTTGATGCAGAGATTAATTTCAGCTACACAAA AGTTAAGCAAGCTGTGGTTCTCAGGACAAGCAGCTGGCTCAGCTGTAAAG TGCTTGCTATGCAAGCCTGAGAACATCAGTTTGCATCTCCAGCACCCATG TAAATGTTGGGTGTGATGGTGCATGCTTGCAATCCCACAGCTGAGGATAT GGAAACAGGCAGAACTCACTGGCCAGC
quality values	Open. Hide. 0 3 6 6 8 10 12 12 14 19 23 21 20 20 20 18 22 26 31 21 19 23 20 17 17 32 34 43 23 22 28 28 22 22 25 12 11 9 9 10 15 24 34 22 26 28 28 28 28 47 47 44 29 23 23 30 30 30 37 37 37 23 19 17 16 13 14 28 28 30 39 43 59 59 59 59 57 47 47 43 47 47 53 54 68 68 68 68 68 59 57 57 57 57 57 68 68 68 50 50 47 54 54 54 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 68 68 68 68 68 57 57 57 57 57 57 57 50 50 57 68 68 68 68 68 68 68 68 68 68 68 68 51 51 50 50 50 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 57 57 57 57 68 68 59 57 57 57 57 57 57 57 57 57 57 57 59 68 68 68 68 68 68 68 68 68 57 59 59 59 59 59 59 68 68 59 59 57 59 59 59 59 68 68 57 57 57 57 57 57 52 52 43 44 28 33 43 44 57 57 59 59 59 59 59 59 57 57 59 59 57 57 57 57 57 57 57 57 57 57 57 68 68 68 59 59 57 57 57 57 57 57 57 59 68 68 68 59 59 59 59 59 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 59 59 54 59 54 59 59 59 59 68 68 68 68 68 50 53 48 48 48 57 57 57 57 57 59 59 59 59 59 59 59 59 59 48 59 48 59 59 47 47 44 44 44 37 41 44 39 39 41 42 50 50 50 50 48 48 48 57 57 57 57 57 57 53 43 43 39 39 37 36 28 32 32 42 42 48 43 43 54 59 57 54 48 48 48 48 48 48 48 57 48 48 46 46 46 57 48 57 57 59 59 59 59 59 43 43 40 47 47 59 59 43 41 32 37 32 32 33 33 33 33 33 41 37 47 48 41 34 28 22 22 28 28 33 37 37 31 31 37 37 37 39 39 37 29 29 37 37 37 30 28 18 14 14 28 30 37 47 34 34 24 22 22 24 22 20 27 33 37 30 30 31 30 30 33 33 36 33 33 23 21 11 19 19 32 32 15 18 12 11 11 11 21 21 28 28 22 32 25 28 23 23 11 11 9 14 18 25 27 24 29 29 37 41 34 34 39 30 21 15 9 9 9 19 23 31 31 20 20 23 21 25 31 29 29 28 28 18 22 21 20 18 19 30 28 29 34 28 28 19 18 11 11 12 15 10 16 11 12 11 17 16 22 17 25 21 17 14 14 14 17 12 13 10 10 10 11 17 14 21 19 20 19 13 12 9 9 12 11 10 8 9 9 9 13 10 11 12 14 12 10 8 8 8 8 10 10 10 16 15 9 10 15 13 15 15 15 13 21 22 23 12 9 9 15 9 10 9 9 10 17 15 8 8 8 8 8 11 11 7 7 7 10 10 16 11 10 11 10 12 12 11 11 11 15 21 20 20 15 11 9 10 9 9 8 8 10 10 10 8 8 8 8 8 10 10 10 12 11 10 10 10 10 15 11 14 14 8 7 6 6 6 8 8 8 10 8 9 9 9 11 11 11 14 14 14 14	Open. Hide. 0 3 7 8 8 10 8 8 8 8 8 13 3 0 3 17 12 18 18 28 34 44 41 37 37 37 32 28 28 37 37 33 34 25 15 10 10 11 11 15 17 17 21 21 37 25 39 39 37 39 34 34 37 37 37 37 39 50 42 41 37 37 25 17 12 18 18 27 30 43 59 59 29 28 30 30 36 36 47 50 53 42 42 37 40 40 47 57 57 57 57 43 43 48 42 42 48 48 53 68 42 42 42 47 47 50 54 68 68 68 68 68 68 50 50 57 57 57 57 57 57 47 47 50 50 50 51 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 59 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 62 68 68 62 62 62 62 62 62 62 62 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 68 68 68 59 59 59 52 52 59 59 59 59 59 59 59 59 59 59 57 57 57 57 57 57 57 57 68 68 59 59 59 59 57 59 54 59 59 57 57 68 57 57 48 48 48 57 57 68 68 57 57 57 59 59 59 59 59 57 59 59 57 57 57 57 57 57 48 48 48 57 48 48 48 48 57 57 68 68 68 68 68 68 68 59 59 48 43 43 43 46 43 54 54 57 57 59 48 48 48 59 59 59 59 59 57 59 59 59 59 59 59 59 59 59 59 48 47 47 47 47 41 44 41 37 31 39 37 36 36 39 59 59 59 59 59 48 48 48 41 40 40 39 30 30 14 14 24 30 39 44 47 47 50 50 50 50 50 50 57 57 43 43 36 43 33 39 40 47 48 59 57 48 43 40 40 48 48 48 48 48 48 57 57 57 50 47 47 47 47 39 47 43 47 47 47 47 47 41 39 39 39 36 32 39 39 59 35 29 25 30 34 37 37 37 39 39 39 47 43 47 48 48 39 39 35 35 39 43 48 48 57 57 57 48 48 48 43 43 48 37 37 37 37 33 37 37 31 31 37 31 36 32 32 18 18 20 32 32 41 39 39 39 46 46 41 41 46 46 41 41 41 39 36 31 41 41 41 41 37 37 41 44 41 41 41 32 30 34 21 15 11 13 19 22 25 25 25 28 34 32 32 32 37 41 46 34 34 35 30 30 27 25 32 32 32 34 39 34 39 28 32 32 32 32 39 23 23 11 11 11 20 22 33 37 32 29 29 25 24 28 25 22 24 28 25 21 11 14 18 19 18 13 12 12 20 17 25 22 25 25 20

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no548_m15.b1 MSMg01no548_m15.b1 CHROMAT_FILE:
MSMg01no548_m15.b1 PHD_FILE: MSMg01no548_m15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 21:30:48 2005
         (470 letters)



>mm_chr16_90372448_90373317
          Length = 870

 Score =  874 bits (452), Expect = 0.0
 Identities = 464/468 (99%), Gaps = 2/468 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagaaaatggggttttttttttgtaaaattattaaggcttgcagaacactgtct 63
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 670 ggaattcagaaaat-gggttttttttttgtaaaattattaaggcttgcagaacactgtct 612

                                                                       
Query: 64  tatttttatgcgtacagcatggtatcacatggaaactaaaacttgaattttttttctctg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 611 tatttttatgcgtacagcatggtatcacatggaaactaaaacttgaattttttttctctg 552

                                                                       
Query: 124 tttggcttttgttcaagtgagtttgtgactcggggtgacatgtggctgtcacgactcttg 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 tttggcttttgttcaagtgagtttgtgactcggggtgacatgtggctgtcacgactcttg 492

                                                                       
Query: 184 ccgcacaatgttcttcgctcctcgagactgagacgaattggtttgcagcgggattcaatt 243
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 acgcacaatgttcttcgctcctcgagactgagacgaattggtttgcagcgggattcaatt 432

                                                                       
Query: 244 cctatgggcacgcacacttcattttcaaatctgaacacttccacagtgaagtgatatttt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 cctatgggcacgcacacttcattttcaaatctgaacacttccacagtgaagtgatatttt 372

                                                                       
Query: 304 tagaaacccttctgatctgtcttttcagttgtactgatcttgttgaaatgccaactataa 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tagaaacccttctgatctgtcttttcagttgtactgatcttgttgaaatgccaactataa 312

                                                                       
Query: 364 caaagctaaaatcataaaggtaaatatttagaacgaagaacacatttatgcctgattttt 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 caaagctaaaatcataaaggtaaatatttagaacgaagaacacatttatgcctgattttt 252

                                                           
Query: 424 t-aaaaagttaaatttaagatctatgagaagaacaagagcactgtaga 470
           | ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 251 ttaaaaagttaaatttatgatctatgagaagaacaagagcactgtaga 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 470
Length of database: 870
Length adjustment: 10
Effective length of query: 460
Effective length of database: 860
Effective search space:   395600
Effective search space used:   395600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information