BAC Information

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BAC

Clone NameB6Ng01-003D10
Chromosome17 (Build37)
Map Location 33,023,546 - 33,155,094
singlet/doubletdoublet
Overlap geneBC066107, Cyp4f14, Cyp4f13, 6030422M01Rik, Zfp472, C920016K16Rik, 1700065O13Rik
Upstream geneHsf2bp, Rrp1b, LOC435518, Notch3, Pdxk-ps, Abhd9, Brd4, LOC100043434, LOC100043433, Akap8, Akap8l, Wiz, A430107D22Rik, Pglyrp2, 4732474A20Rik, EG208285, Cyp4f16, LOC667178, LOC677156, EG631304, Cyp4f15, LOC623809, 9030612M13Rik, Zfp811, 6030490I01Rik, LOC631266
Downstream gene4921501E09Rik, Zfp563, Morc2b, LOC100038859, LOC100038860, LOC100043474, Zfp422-rs1, Olfr63, LOC100043468, Zfp81, Zfp101, 1700029I08Rik, LOC100042953, Adamts10, Myo1f, Zfp414, Pram1, Hnrpm, March2, Rab11b, Angptl4, Ankrd47, Rps28, Ndufa7, Cd320, LOC100042967, LOC630219, LOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003D10.bB6Ng01-003D10.g
ACCDH840994DH840995
length9881,005
definitionDH840994|Mus musculus domesticus DNA, BAC clone: B6Ng01-003D10, 5' end.DH840995|Mus musculus domesticus DNA, BAC clone: B6Ng01-003D10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,023,546 - 33,024,525)(33,154,085 - 33,155,094)
sequence
gaattcatactcatcagaaggatgctatctgcttaaaatccaacatattg
tctgtctacattacctgggttggtagacactactcgtatgtggttttaaa
accttggtttagtgtgtaatgtgggtgggaagtgtgagcatgccacagaa
cactagtggaagttagaagcatcctgtggaagttggttctagaggttgaa
cttagaccatatttagcttatccctttatccactgagccaactcactgga
cctctggttaatactccttcttacaacttgctatgaacctgaatacatgt
tcagcgattgcataaaaggcagatattagaatgtgtacagctcgggctgg
agacatggctcctcagttaagagcactgactgttcttccagaggtcctga
gttcaattcccagcaactacatggtggctcacaaccatctgtaataggat
ctgatgccctcttccggtgtgtctgaagacagctacagtgtattcatata
catataaataaataaatcttaaaaaaatgaaagtgtttaactgggttcct
taatcaaacagcaaacaggactcgtgacaagcagttcttctcagtagtgt
cctatatttccttctgttgctatgacatatcattaccaaaatgcaacttt
gggcaggactatgtttatatggatttacagatcagtctatcaatgatgga
aactaaggggggaaactaaaggaagtagtgtgcaggcaagaactgaagag
gagagcacgcatgaacagggctcactggctggttggggtattcttctcct
ccacgttttgagcccctacttcctgggatgtcaacacccacactggacta
ggccctcctttcatcattagcatttaagaaaatgttcgggggaccgggag
agatggctcagcctattaagaccactaactggctcttccagggggtcctg
aatttcaattcctagcacctcctggtggctcaaaccat
gaattccatgtatacatgtggacccccacacaaccccattatttaaagtg
tatatacatatagagaacaattgaaattttcagaagttagttgtatccct
gatatgcaagcatatataggataaaatcctatggcactgggcatggtagg
atgtgccttttattctagcactgggcaaggtggggatagtaaagagtaga
gagttataatggatatagtggatttgaacactccatgggaagtttaggat
gagctagttacaagcaagcagaattttctttgcaagaagaaaaaactaga
gagacagttcagctgttcagagcccatgctgctctgccagggggcctgag
tttgtctcagcatcaacattgtgtggcttacaaccatctaagaactgtga
tgccctcttctggcctctgtagggatagaacacatgggatgcatatacat
ataaataaaataagtctttttttttaaaaattatgtgtacaaagcaaata
ggagaaacgtgttttttcaaaaaatctgaagtatcatgtagtctaatctt
ataagaataagaaatgtggagacagcaaatttatttgcacaggatatttc
tggggataacctggagtacagtaaaattatgagcattttttcattgtctg
attcttacatgagatctttagtttgcattatttttttttttttatatttc
tgatagaagatttggtgaataatgtcatgattttgcctgcctatatttcc
tggttcttgaactgctgaatctaacacgacactgtctctagcaatacaat
cacatccatataaagaaacatttgcattgaggtgatgtaagcgtgattaa
ttaatttcagttcagtgggtgttgtttaatgaagtgaggcagtgcttttt
ctacttactgtagagctgttggagtcactgaactgagatacatttgtata
aacagtagacttaatttatttagtttgttgtaaatgtggttcatttggaa
gtgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_33023546_33024525
seq2: B6Ng01-003D10.b_49_1036

seq1  GAATTCATACTCATCAGAAGGATGCTATCTGCTTAAAATCCAACATATTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACTCATCAGAAGGATGCTATCTGCTTAAAATCCAACATATTG  50

seq1  TCTGTCTACATTACCTGGGTTGGTAGACACTACTCGTATGTGGTTTTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTACATTACCTGGGTTGGTAGACACTACTCGTATGTGGTTTTAAA  100

seq1  ACCTTGGTTTAGTGTGTAATGTGGGTGGGAAGTGTGAGCATGCCACAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGTTTAGTGTGTAATGTGGGTGGGAAGTGTGAGCATGCCACAGAA  150

seq1  CACTAGTGGAAGTTAGAAGCATCCTGTGGAAGTTGGTTCTAGAGGTTGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAGTGGAAGTTAGAAGCATCCTGTGGAAGTTGGTTCTAGAGGTTGAA  200

seq1  CTTAGACCATATTTAGCTTATCCCTTTATCCACTGAGCCAACTCACTGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGACCATATTTAGCTTATCCCTTTATCCACTGAGCCAACTCACTGGA  250

seq1  CCTCTGGTTAATACTCCTTCTTACAACTTGCTATGAACCTGAATACATGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGTTAATACTCCTTCTTACAACTTGCTATGAACCTGAATACATGT  300

seq1  TCAGCGATTGCATAAAAGGCAGATATTAGAATGTGTACAGCTCGGGCTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCGATTGCATAAAAGGCAGATATTAGAATGTGTACAGCTCGGGCTGG  350

seq1  AGACATGGCTCCTCAGTTAAGAGCACTGACTGTTCTTCCAGAGGTCCTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGGCTCCTCAGTTAAGAGCACTGACTGTTCTTCCAGAGGTCCTGA  400

seq1  GTTCAATTCCCAGCAACTACATGGTGGCTCACAACCATCTGTAATAGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAATTCCCAGCAACTACATGGTGGCTCACAACCATCTGTAATAGGAT  450

seq1  CTGATGCCCTCTTCCGGTGTGTCTGAAGACAGCTACAGTGTATTCATATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGCCCTCTTCCGGTGTGTCTGAAGACAGCTACAGTGTATTCATATA  500

seq1  CATATAAATAAATAAATCTTAAAAAAATGAAAGTGTTTAACTGGGTTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAAATAAATAAATCTTAAAAAAATGAAAGTGTTTAACTGGGTTCCT  550

seq1  TAATCAAACAGCAAACAGGACTCGTGACAAGCAGTTCTTCTCAGTAGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAAACAGCAAACAGGACTCGTGACAAGCAGTTCTTCTCAGTAGTGT  600

seq1  CCTATATTTCCTTCTGTTGCTATGACATATCATTACC-AAATGCAAC-TT  648
      ||||||||||||||||||||||||||||||||||||| ||||||||| ||
seq2  CCTATATTTCCTTCTGTTGCTATGACATATCATTACCAAAATGCAACTTT  650

seq1  GGGCAGGACTATGTTTATATGGA-TTACAGATCAGTCTATCAATGATGGA  697
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GGGCAGGACTATGTTTATATGGATTTACAGATCAGTCTATCAATGATGGA  700

seq1  AACTAAGGGGGGAAACTAAAGGAAGAAGTGTGCAGGCAAGAACTGAAGAG  747
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AACTAAGGGGGGAAACTAAAGGAAGTAGTGTGCAGGCAAGAACTGAAGAG  750

seq1  GAGAGCACGCATGAACAGGGCTCACTGGCTGGTTGGGTTATTCTTCTCCT  797
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GAGAGCACGCATGAACAGGGCTCACTGGCTGGTTGGGGTATTCTTCTCCT  800

seq1  CCACG-TTTGAGCCCCTACTTCCTGGGATGTCAACACCCACACTGGACTA  846
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGTTTTGAGCCCCTACTTCCTGGGATGTCAACACCCACACTGGACTA  850

seq1  GGCCCTCC-TTCATCAATTAGCATTTAAGAAAATGCTCTGGGGA-CTGGA  894
      |||||||| |||||| ||||||||||||||||||| || ||||| | |||
seq2  GGCCCTCCTTTCATC-ATTAGCATTTAAGAAAATGTTCGGGGGACCGGGA  899

seq1  GAGATGGCTCAG-CGATTAAGAGCACTAACT-GCTCTTCCA-GGGGTCCT  941
      |||||||||||| | ||||||| |||||||| ||||||||| ||||||||
seq2  GAGATGGCTCAGCCTATTAAGACCACTAACTGGCTCTTCCAGGGGGTCCT  949

seq1  G-AGTTCAATTCCTAGCACCCACATGTGGCTCAAAACCAT  980
      | | ||||||||||||||||  |  ||||||| |||||||
seq2  GAATTTCAATTCCTAGCACCTCCTGGTGGCTC-AAACCAT  988

seq1: chr17_33154085_33155094
seq2: B6Ng01-003D10.g_69_1073 (reverse)

seq1  TTCACTTTCAAATGAACCACATTTACCAACAAACTAGATAAAATTAAGTC  50
      ||||||| ||||||||||||||||| |||||||||| || ||||||||||
seq2  TTCACTTCCAAATGAACCACATTTA-CAACAAACTAAAT-AAATTAAGTC  48

seq1  TACTGTTTTATTACAAATGTATCTCAGTTCAGTGACTCCAACAGCTCTAC  100
      ||||||||   |||||||||||||||||||||||||||||||||||||||
seq2  TACTGTTT--ATACAAATGTATCTCAGTTCAGTGACTCCAACAGCTCTAC  96

seq1  AGTAAAGTAGAAAAAGCACTGCCTCACTTCATTAAACAACACCCACTGAA  150
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGT-AAGTAGAAAAAGCACTGCCTCACTTCATTAAACAACACCCACTGAA  145

seq1  CTGAAATTAATTAATCACGCTTACATCACCTCAATGCAAATGTTTCTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATTAATTAATCACGCTTACATCACCTCAATGCAAATGTTTCTTTA  195

seq1  TATGGATGTGATTGTATTGCTAGAGACAGTGTCGTGTTAGATTCAGCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGATGTGATTGTATTGCTAGAGACAGTGTCGTGTTAGATTCAGCAGT  245

seq1  TCAAGAACCAGGAAATATAGGCAGGCAAAATCATGACATTATTCACCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGAACCAGGAAATATAGGCAGGCAAAATCATGACATTATTCACCAAA  295

seq1  TCTTCTATCAGAAATATAAAAAAAAAAAAATAATGCAAACTAAAGATCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTATCAGAAATATAAAAAAAAAAAAATAATGCAAACTAAAGATCTC  345

seq1  ATGTAAGAATCAGACAATGAAAAAATGCTCATAATTTTACTGTACTCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAGAATCAGACAATGAAAAAATGCTCATAATTTTACTGTACTCCAG  395

seq1  GTTATCCCCAGAAATATCCTGTGCAAATAAATTTGCTGTCTCCACATTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATCCCCAGAAATATCCTGTGCAAATAAATTTGCTGTCTCCACATTTC  445

seq1  TTATTCTTATAAGATTAGACTACATGATACTTCAGATTTTTTGAAAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTTATAAGATTAGACTACATGATACTTCAGATTTTTTGAAAAAAC  495

seq1  ACGTTTCTCCTATTTGCTTTGTACACATAATTTTTAAAAAAAAAGACTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTTCTCCTATTTGCTTTGTACACATAATTTTTAAAAAAAAAGACTTA  545

seq1  TTTTATTTATATGTATATGCATCCCATGTGTTCTATCCCTACAGAGGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTATATGTATATGCATCCCATGTGTTCTATCCCTACAGAGGCCA  595

seq1  GAAGAGGGCATCACAGTTCTTAGATGGTTGTAAGCCACACAATGTTGATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGGCATCACAGTTCTTAGATGGTTGTAAGCCACACAATGTTGATG  645

seq1  CTGAGACAAACTCAGGCCCCCTGGCAGAGCAGCATGGGCTCTGAACAGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGACAAACTCAGGCCCCCTGGCAGAGCAGCATGGGCTCTGAACAGCT  695

seq1  GAACTGTCTCTCTAGTTTTTTCTTCTTGCAAAGAAAATTCTGCTTGCTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGTCTCTCTAGTTTTTTCTTCTTGCAAAGAAAATTCTGCTTGCTTG  745

seq1  TAACTAGCTCATCCTAAACTTCCCATGGAGTGTTCAAATCCACTATATCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTAGCTCATCCTAAACTTCCCATGGAGTGTTCAAATCCACTATATCC  795

seq1  ATTATAACTCTCTACTCTTTACTATCCCCACCTTGCCCAGTGCTAGAATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAACTCTCTACTCTTTACTATCCCCACCTTGCCCAGTGCTAGAATA  845

seq1  AAAGGCACATCCTACCATGCCCAGTGCCATAGGATTTTATCCTATATATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCACATCCTACCATGCCCAGTGCCATAGGATTTTATCCTATATATG  895

seq1  CTTGCATATCAGGGATACAACTAACTTCTGAAAATTTCAATTGTTCTCTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCATATCAGGGATACAACTAACTTCTGAAAATTTCAATTGTTCTCTA  945

seq1  TATGTATATACACTTTAAATAATGGGGTTGTGTGGGGGTCCACATGTATA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATATACACTTTAAATAATGGGGTTGTGTGGGGGTCCACATGTATA  995

seq1  CATGGAATTC  1010
      ||||||||||
seq2  CATGGAATTC  1005