BAC Information

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BAC

Clone NameB6Ng01-003F14
Chromosome17 (Build37)
Map Location 74,666,666 - 74,835,510
singlet/doubletdoublet
Overlap geneMemo1, 2810410M20Rik, LOC668773, LOC668775, Spast, Slc30a6, Nlrc4
Upstream geneCapn13, LOC100043666, Galnt14, Ehd3, LOC240160, Xdh, Srd5a2, EG668716
Downstream geneLOC100043883, LOC624159, Yipf4, Birc6, Ttc27, LOC100043672, Ltbp1, EG621988
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-003F14.bB6Ng01-003F14.g
ACCDH841091DH841092
length1,143882
definitionDH841091|Mus musculus domesticus DNA, BAC clone: B6Ng01-003F14, 5' end.DH841092|Mus musculus domesticus DNA, BAC clone: B6Ng01-003F14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,666,666 - 74,667,794)(74,834,629 - 74,835,510)
sequence
gaattccacacacaattctcattaactctaagtaaatgcacccccccatt
taagcctatccataatgagctaaatcaaatcccaaggatggaactctcta
gtcaacggctctcaccaacaaacaagcatttcaacacaaccaacaactgc
ttacagcctttctcccttttcagctacagagcttcagtatctaacttaca
ggcacaggaacatgcacacacatgggcagccctagtggcctctggtctta
cgttatcatagtataattttacttatggcatctccacagccaccttttaa
acttgtttttaaaaaggaaaaaaaaaggaggccagtgagataactctgta
gggaaaggtgtttatcagcaagcctgacgacctagtctaatccttaggac
ccatgtggttaaagagaatcaactcctacaagatatcctctgatctctaa
atacacactacggcatgtgaaacccacacacatacacataaataaacaaa
tgtaattttgaagatggaatggaagacagactacgatttctctcccccga
gattgggcatgacctataataagctcaaaactgacctgtctcaggacagg
ccggagagatgtctcagtggtttaaagcattttctattctcgcagagggc
ctcagttccgttcccagcacccatatctgatagctcacagccacatgtaa
attcagttccagaggatccggtgccctcttcaggcctacgtaggaactgc
acacatgataaacttacatatatacaagcaaaatacttgtaacaacaatg
ttcagcatgatttctatgatttaaaaaataataataaccagtctcaataa
agattgtactttcggttctcattcagtttctgcctaaggctccttaaatg
gccactggggagagcagcccacttggtatctcttgggaacttcctcccat
cctcatttcttcctcctttttcctaaataagtctacatttgcttcagctc
acttcttgttcaaatatcttgtccaaattcttcttggaccatgaccatga
aatttggaagcttcaaggtggtttgggtggtcactgattcacccagcact
cttgaatggatggaccagatgatgaacggatgaacagacaggc
gaattctaaagaggctgaaaaaatgtccatatggctacctgaaaatcttt
tggtttggtttttctttcagcacagaatcttcacaatttgatcaagctga
gcattcttgatatatcagaaaattacctggaaaaggatgggaatgaagct
ctacaggaactgagtaagaagcccggcattgcccatgcaatgagctttct
tcttttggttttttcgagactgggtttctctgtgtagccctggctgtcct
ggaactcactctgtagaccaggctggcctcgaactcagaaatccacctgc
ctctgcctcccgagtgctgggattaaaggtgtgagccaccacgcctggct
agtattcttatgctgcctggttgcaacaagggactgtgggtgagctctca
gatgagcgaaacatttcgaggttttttttttttttttttaattaattaat
tttttttctttgaaaaagagtttcactacgcaacctggagctctctaaga
agacagggtgtccttgaagagctccatctgcctctgcctcttgaatgttg
gtatcaaaaagattcttattctgattgttttgttacaggaaaatgaggca
gggaagctcccgtgctcaaacagtcactagaaatacagcggaggatcgga
aagattcactgtgtcaggcttagtggagttctcttcatggctcagagcaa
ctaactgaacagagataggggctttctagccctggtttcaaccattgcat
cacctgtgggcttaagtttctaccaaagccacatggcaaagatacaaaca
agaaatccaagccaggattgatggtgtactcctttgacccctgcaagtaa
ataggcaggcagatctctgttgtctggaggcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_74666666_74667794
seq2: B6Ng01-003F14.b_45_1187

seq1  GAATTCCACACACAATTCTCATTAACTCTAAGTAAATGCACCCCCCCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACACAATTCTCATTAACTCTAAGTAAATGCACCCCCCCATT  50

seq1  TAAGCCTATCCATAATGAGCTAAATCAAATCCCAAGGATGGAACTCTCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCTATCCATAATGAGCTAAATCAAATCCCAAGGATGGAACTCTCTA  100

seq1  GTCAACGGCTCTCACCAACAAACAAGCATTTCAACACAACCAACAACTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACGGCTCTCACCAACAAACAAGCATTTCAACACAACCAACAACTGC  150

seq1  TTACAGCCTTTCTCCCTTTTCAGCTACAGAGCTTCAGTATCTAACTTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGCCTTTCTCCCTTTTCAGCTACAGAGCTTCAGTATCTAACTTACA  200

seq1  GGCACAGGAACATGCACACACATGGGCAGCCCTAGTGGCCTCTGGTCTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACAGGAACATGCACACACATGGGCAGCCCTAGTGGCCTCTGGTCTTA  250

seq1  CGTTATCATAGTATAATTTTACTTATGGCATCTCCACAGCCACCTTTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTATCATAGTATAATTTTACTTATGGCATCTCCACAGCCACCTTTTAA  300

seq1  ACTTGTTTTTAAAAAGGAAAAAAAAAGGAGGCCAGTGAGATAACTCTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTTTTTAAAAAGGAAAAAAAAAGGAGGCCAGTGAGATAACTCTGTA  350

seq1  GGGAAAGGTGTTTATCAGCAAGCCTGACGACCTAGTCTAATCCTTAGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAAGGTGTTTATCAGCAAGCCTGACGACCTAGTCTAATCCTTAGGAC  400

seq1  CCATGTGGTTAAAGAGAATCAACTCCTACAAGATATCCTCTGATCTCTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGGTTAAAGAGAATCAACTCCTACAAGATATCCTCTGATCTCTAA  450

seq1  ATACACACTACGGCATGTGAAACCCACACACATACACATAAATAAACAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACACTACGGCATGTGAAACCCACACACATACACATAAATAAACAAA  500

seq1  TGTAATTTTGAAGATGGAATGGAAGACAGACTACGATTTCTCTCCCCCGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATTTTGAAGATGGAATGGAAGACAGACTACGATTTCTCTCCCCCGA  550

seq1  GATTGGGCATGACCTATAATAAGCTCAAAACTGACCTGTCTCAGGACAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGGGCATGACCTATAATAAGCTCAAAACTGACCTGTCTCAGGACAGG  600

seq1  CCGGAGAGATGTCTCAGTGGTTTAAAGCATTTTCTATTCTCGCAGAGGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAGAGATGTCTCAGTGGTTTAAAGCATTTTCTATTCTCGCAGAGGGC  650

seq1  CTCAGTTCCGTTCCCAGCACCCATATCTGATAGCTCACAGCCACATGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTCCGTTCCCAGCACCCATATCTGATAGCTCACAGCCACATGTAA  700

seq1  ATTCAGTTCCAGAGGATCCGGTGCCCTCTTCAGGCCTACGTAGGAACTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTTCCAGAGGATCCGGTGCCCTCTTCAGGCCTACGTAGGAACTGC  750

seq1  ACACATGATAAACTTACATATATACAAGCAAAATACTTGTAACAACAATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGATAAACTTACATATATACAAGCAAAATACTTGTAACAACAATG  800

seq1  -TCAGCATGA-TTCTATGATTTAAAAAATAATAATAACCAGTCTCAATAA  848
       ||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCATGATTTCTATGATTTAAAAAATAATAATAACCAGTCTCAATAA  850

seq1  AGATTGTACTTCAGGTTC-CATTCAG-TTCTGCCTAAGGC-CCTTAAAAG  895
      |||||||||||  ||||| ||||||| ||||||||||||| ||||||| |
seq2  AGATTGTACTTTCGGTTCTCATTCAGTTTCTGCCTAAGGCTCCTTAAATG  900

seq1  GCCACTGGGGAGAGCAGCCCAC-TGGTATCTCTT-GGAACTT-CTCCCAT  942
      |||||||||||||||||||||| ||||||||||| ||||||| |||||||
seq2  GCCACTGGGGAGAGCAGCCCACTTGGTATCTCTTGGGAACTTCCTCCCAT  950

seq1  CCTCATTTCTTCCTCCTTTTTCCTAAATAAGTCTACATTTGC-TCAGCTC  991
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CCTCATTTCTTCCTCCTTTTTCCTAAATAAGTCTACATTTGCTTCAGCTC  1000

seq1  ACTTCTTGTTCAAATATCCTTGTCCAAATTCTTCTT-GACCATGA-CATG  1039
      ||||||||||||||||| |||||||||||||||||| |||||||| ||||
seq2  ACTTCTTGTTCAAATAT-CTTGTCCAAATTCTTCTTGGACCATGACCATG  1049

seq1  -AATTTGGAAGC-TCAGGGTGGTTTGGGTGGTCACTGA-TCACCCAGCAC  1086
       ||||||||||| ||| ||||||||||||||||||||| |||||||||||
seq2  AAATTTGGAAGCTTCAAGGTGGTTTGGGTGGTCACTGATTCACCCAGCAC  1099

seq1  TC-TGGATGGATGGA-CAGATGGATGGACAGATGAACAGACAGGC  1129
      || || ||||||||| ||||| |||| || |||||||||||||||
seq2  TCTTGAATGGATGGACCAGAT-GATGAACGGATGAACAGACAGGC  1143

seq1: chr17_74834629_74835510
seq2: B6Ng01-003F14.g_67_948 (reverse)

seq1  GGCCT-CAGACTAACAGAGATCTGCCTGCCTATTTACTTGCAGGGGTCAA  49
      ||||| ||||| ||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCCAGAC-AACAGAGATCTGCCTGCCTATTTACTTGCAGGGGTCAA  49

seq1  AGGAGTACACCATCAATCCTGGCTTGGATTTCTTGTTTGTATCTTTGCCA  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTACACCATCAATCCTGGCTTGGATTTCTTGTTTGTATCTTTGCCA  99

seq1  TGTGGCTTTGGTAGAAACTTAAGCCCACAGGTGATGCAATGGTTGAAACC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCTTTGGTAGAAACTTAAGCCCACAGGTGATGCAATGGTTGAAACC  149

seq1  AGGGCTAGAAAGCCCCTATCTCTGTTCAGTTAGTTGCTCTGAGCCATGAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTAGAAAGCCCCTATCTCTGTTCAGTTAGTTGCTCTGAGCCATGAA  199

seq1  GAGAACTCCACTAAGCCTGACACAGTGAATCTTTCCGATCCTCCGCTGTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACTCCACTAAGCCTGACACAGTGAATCTTTCCGATCCTCCGCTGTA  249

seq1  TTTCTAGTGACTGTTTGAGCACGGGAGCTTCCCTGCCTCATTTTCCTGTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGTGACTGTTTGAGCACGGGAGCTTCCCTGCCTCATTTTCCTGTA  299

seq1  ACAAAACAATCAGAATAAGAATCTTTTTGATACCAACATTCAAGAGGCAG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAATCAGAATAAGAATCTTTTTGATACCAACATTCAAGAGGCAG  349

seq1  AGGCAGATGGAGCTCTTCAAGGACACCCTGTCTTCTTAGAGAGCTCCAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGATGGAGCTCTTCAAGGACACCCTGTCTTCTTAGAGAGCTCCAGG  399

seq1  TTGCGTAGTGAAACTCTTTTTCAAAGAAAAAAAATTAATTAATTAAAAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCGTAGTGAAACTCTTTTTCAAAGAAAAAAAATTAATTAATTAAAAAA  449

seq1  AAAAAAAAAAAACCTCGAAATGTTTCGCTCATCTGAGAGCTCACCCACAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAACCTCGAAATGTTTCGCTCATCTGAGAGCTCACCCACAG  499

seq1  TCCCTTGTTGCAACCAGGCAGCATAAGAATACTAGCCAGGCGTGGTGGCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGTTGCAACCAGGCAGCATAAGAATACTAGCCAGGCGTGGTGGCT  549

seq1  CACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGTGGATTTCTGAG  599

seq1  TTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTAC  649

seq1  ACAGAGAAACCCAGTCTCGAAAAAACCAAAAGAAGAAAGCTCATTGCATG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGAAACCCAGTCTCGAAAAAACCAAAAGAAGAAAGCTCATTGCATG  699

seq1  GGCAATGCCGGGCTTCTTACTCAGTTCCTGTAGAGCTTCATTCCCATCCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATGCCGGGCTTCTTACTCAGTTCCTGTAGAGCTTCATTCCCATCCT  749

seq1  TTTCCAGGTAATTTTCTGATATATCAAGAATGCTCAGCTTGATCAAATTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGGTAATTTTCTGATATATCAAGAATGCTCAGCTTGATCAAATTG  799

seq1  TGAAGATTCTGTGCTGAAAGAAAAACCAAACCAAAAGATTTTCAGGTAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATTCTGTGCTGAAAGAAAAACCAAACCAAAAGATTTTCAGGTAGC  849

seq1  CATATGGACATTTTTTCAGCCTCTTTAGAATTC  882
      |||||||||||||||||||||||||||||||||
seq2  CATATGGACATTTTTTCAGCCTCTTTAGAATTC  882