BAC Information

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BAC

Clone NameB6Ng01-004G12
Chromosome17 (Build37)
Map Location 59,366,783 - 59,522,062
singlet/doubletdoublet
Overlap genenone
Upstream geneCntnap5c, LOC620408, EG545216, LOC668648, 2610034M16Rik, Nudt12, 4930505H01Rik
Downstream geneLOC100043537, LOC100043542
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004G12.bB6Ng01-004G12.g
ACCDH841826DH841827
length1,1711,219
definitionDH841826|Mus musculus domesticus DNA, BAC clone: B6Ng01-004G12, 5' end.DH841827|Mus musculus domesticus DNA, BAC clone: B6Ng01-004G12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,366,783 - 59,367,977)(59,520,835 - 59,522,062)
sequence
gaattcagaaatccataaaggagcatgattaggagggatttattccaaag
atgtctggaaaaagtcaattaatataactcactgtatagtcaatgaaaac
agaattaacatgatcttaataaaaagaaaattgataacattacagtctta
taagaggtctcagcaatccagaccaaaccagaccacattaactcttaggt
ctaaaatcatattcatagaacaagcctgaaaccacacttcttaggctaca
aagaagactagagtgttggaatctgtcccttttctcttaacacacattgt
aatttaattcatacaatgcagtaggtaaaataaacaaaaggtgtccaggg
cagaaatatgaaaatccacctgttctattggtagctaacacaggtcatgt
ggaagcgccaagaatttagtcaaaaggcctctgaaagctaataataactt
caccccaaactcaatatataataacaaaatctttaactttatgtatatgt
tctagcaatgaatttgtgaacactaaaaacaagcaaacaaaaaccttctg
tgtatactatctacaattcataaacatatactggtaaaattttacttagg
aggaaatctgacaaaacatcacatagaaattgtaggagtacacaaaggcc
attgctccaggccttctttgaaaggggaacaaaatactaatgggagcaaa
tatggagacaaaatgtagagcagagagtgaaggaaaggatatccatagac
tgtcccacctggggattcatcccatacacactcaccaaacccgacactat
tttggatgccaagaaatacttgctgacaggagcctgatacaatattaaaa
ataaacaaatttacagtttaaaagagaaattatatgggagctatacaaac
acagatgaaagagactgtaaacatatatagatgtatcaggtgcatggatg
aaatattggaaatagtagaataatcttctcccaaatccataaaggtttaa
tacaattctaaatgtcactcagctttaaaagattaaaagaaattgtgttg
gaattgtaattaaaagcaaagctatgtaaactagttcatgatgttttctt
atgggtgccctgtgtgatgtatgcactgatcagcgtgggtgccacgagcc
aatggtcgattccttggaggt
gaattcccttgacatgaacaaatatttcatatggttaagtagtcattaaa
atgagcaatggggaacgaacacagtatccaatatcaagagaaaaactggg
caatggaaatggggagatacatgagacattaagaatctaggttttggcag
ccggaccacattgccacctgttgttcttgttttgctaattattcctggta
taatttattcagctgtgcctatgagtacacagaagaagggccattaatac
agagctaaagccctgaaggtcaggtgaactgtttatgttactaacaacca
cttgagtaaaagaagatacatgttttttatgaggaatttcagagagtaag
atttagctattttaaaagtaaagaaagaaaaaacaaaggaaataaatcca
tgtgcaatagtttttcacactgtgaggtaccatttagtctcttctgcctt
actgatcctatcatggaattcttcaaagaagctgatttaaaattataagg
atttaacttctggtactaattgatagcttcaaaagagacacttatttcca
acaaaggcaagattagactgagaaaattttataggcaatttgctctgaac
agaattttattttccttaatctaattgacattaagatatacaattatttt
atgttataaaaattgataggtaaatctccattaaatagtaaagacaaatg
gtataagttacagaaaagaaagctagtattgataaagatgatattgtagc
cttctacagaataaaaatagtggggatgctgttttcatctgactgggttc
ttccaagaacagtcacccagacctgaaaattagatcaatcactggaaggg
ggctagggttttttttttctgctacatcctatactttagaactcactttc
cttatcttctaatatcaaattttcagttctctatttcttcagtcctggtt
acagcatttatttttaaagtcagactcagtcggagtttgtctttgtagct
aggatcaacgtgtcaagaggtgcaaacttggattgctttagactacaaag
aaacataatttgtcatcactctgcctaatactctggagaggcagacttac
agtagttcagcgaattattggcaatggagaccatggtcaacagtcattag
aattgttggaatatgcaccatgtttgtacgtgtaggagctgaagggtgca
ttccccatagggggagaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_59366783_59367977
seq2: B6Ng01-004G12.b_43_1213

seq1  GAATTCAGAAATCCATAAAGGAGCATGATTAGGAGGGATTTATTCCAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAATCCATAAAGGAGCATGATTAGGAGGGATTTATTCCAAAG  50

seq1  ATGTCTGGAAAAAGTCAATTAATATAACTCACTGTATAGTCAATGAAAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGGAAAAAGTCAATTAATATAACTCACTGTATAGTCAATGAAAAC  100

seq1  AGAATTAACATGATCTTAATAAAAAGAAAATTGATAACATTACAGTCTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTAACATGATCTTAATAAAAAGAAAATTGATAACATTACAGTCTTA  150

seq1  TAAGAGGTCTCAGCAATCCAGACCAAACCAGACCACATTAACTCTTAGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGTCTCAGCAATCCAGACCAAACCAGACCACATTAACTCTTAGGT  200

seq1  CTAAAATCATATTCATAGAACAAGCCTGAAACCACACTTCTTAGGCTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAATCATATTCATAGAACAAGCCTGAAACCACACTTCTTAGGCTACA  250

seq1  AAGAAGACTAGAGTGTTGGAATCTGTCCCTTTTCTCTTAACACACATTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAGACTAGAGTGTTGGAATCTGTCCCTTTTCTCTTAACACACATTGT  300

seq1  AATTTAATTCATACAATGCAGTAGGTAAAATAAACAAAAGGTGTCCAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAATTCATACAATGCAGTAGGTAAAATAAACAAAAGGTGTCCAGGG  350

seq1  CAGAAATATGAAAATCCACCTGTTCTATTGGTAGCTAACACAGGTCATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAATATGAAAATCCACCTGTTCTATTGGTAGCTAACACAGGTCATGT  400

seq1  GGAAGCGCCAAGAATTTAGTCAAAAGGCCTCTGAAAGCTAATAATAACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCGCCAAGAATTTAGTCAAAAGGCCTCTGAAAGCTAATAATAACTT  450

seq1  CACCCCAAACTCAATATATAATAACAAAATCTTTAACTTTATGTATATGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCAAACTCAATATATAATAACAAAATCTTTAACTTTATGTATATGT  500

seq1  TCTAGCAATGAATTTGTGAACACTAAAAACAAGCAAACAAAAACCTTCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCAATGAATTTGTGAACACTAAAAACAAGCAAACAAAAACCTTCTG  550

seq1  TGTATACTATCTACAATTCATAAACATATACTGGTAAAATTTTACTTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATACTATCTACAATTCATAAACATATACTGGTAAAATTTTACTTAGG  600

seq1  AGGAAATCTGACAAAACATCACATAGAAATTGTAGGAGTACACAAAGGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATCTGACAAAACATCACATAGAAATTGTAGGAGTACACAAAGGCC  650

seq1  ATTGCTCCAGGCCTTCTTTGAAAGGGGAACAAAATACTAATGGGAGCAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCTCCAGGCCTTCTTTGAAAGGGGAACAAAATACTAATGGGAGCAAA  700

seq1  TATGGAGACAAAATGTAGAGCAGAGAGTGAAGGAAAGGATATCCATAGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGAGACAAAATGTAGAGCAGAGAGTGAAGGAAAGGATATCCATAGAC  750

seq1  TGTCCCACCTGGGGATTCATCCCATACACACTCACCAAACCCGACACTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCACCTGGGGATTCATCCCATACACACTCACCAAACCCGACACTAT  800

seq1  TTTGGATGCCAAGAAATACTTGCTGACAGGAGCCTGATACAATATTAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGATGCCAAGAAATACTTGCTGACAGGAGCCTGATACAATATTAAAA  850

seq1  ATAAACAAATTTACAGTTTAAAAGAGAAATTATATGGGAGCTATACAAAA  900
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATAAACAAATTTACAGTTTAAAAGAGAAATTATATGGGAGCTATAC-AAA  899

seq1  CACAGATGAAAGAGACTGTAAACATATATAAGATGTATCAGGTGCATGGA  950
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CACAGATGAAAGAGACTGTAAACATATAT-AGATGTATCAGGTGCATGGA  948

seq1  TGAAATATTGGACATAGTAGAATAATCTTCTCCCAAAATCCATAAAGGTT  1000
      |||||||||||| ||||||||||||||||||||| |||||||||||||||
seq2  TGAAATATTGGAAATAGTAGAATAATCTTCTCCC-AAATCCATAAAGGTT  997

seq1  TAATACAATTTCTAAATGTCACCCAGCTTTTAGAGATATAAAGAAAATTG  1050
      |||||||| ||||||||||||| ||||||| | |||| ||||  ||||||
seq2  TAATACAA-TTCTAAATGTCACTCAGCTTTAAAAGAT-TAAAAGAAATTG  1045

seq1  TGTTGAAATGTATATTAAAAAGCAAAGCTATGGAAAAACTAAGTTTCAAT  1100
      ||||| ||| | || | |||||||||||||||   ||||| ||||   ||
seq2  TGTTGGAAT-TGTAATTAAAAGCAAAGCTATG--TAAACT-AGTT--CAT  1089

seq1  GATTGTTTTTCTTAATGTGTGCCTCTGTGTGGATGTATGCACTTGATCAG  1150
      |||   ||||||| ||| ||||| |||||| ||||||||||| |||||||
seq2  GAT--GTTTTCTT-ATGGGTGCC-CTGTGT-GATGTATGCAC-TGATCAG  1133

seq1  CGTGGGTGCCCACGGAGGCTCATTGTGTCAGATTCCCTTGGAGGT  1195
      |||||||| |||| |||   || || ||| |||| ||||||||||
seq2  CGTGGGTG-CCAC-GAG--CCAATG-GTC-GATT-CCTTGGAGGT  1171

seq1: chr17_59520835_59522062
seq2: B6Ng01-004G12.g_69_1287 (reverse)

seq1  GTTCT--CCCTATGGGG-ATACAAACCCCTTCAGCTCCTTACACTGTCCA  47
      |||||  |||||||||| || ||   |||||||||||| ||||| || | 
seq2  GTTCTCCCCCTATGGGGAATGCA---CCCTTCAGCTCC-TACAC-GTAC-  44

seq1  AAACATAGTTTTCCATAATTCAAACATATCTTAATGAACTGGTTGACAAT  97
      |||||| |   | ||| |||| |||| ||  ||||| ||| |||||| ||
seq2  AAACATGG---TGCAT-ATTCCAACA-ATTCTAATG-ACT-GTTGACCAT  87

seq1  GGTCTCCATTGCCATATATTCTGCTGGACTACTTGTAGTTCTGCTTCT-C  146
      |||||||||||||| ||| |  |||| ||||| ||||  ||||| ||| |
seq2  GGTCTCCATTGCCA-ATAATTCGCTGAACTAC-TGTAAGTCTGCCTCTCC  135

seq1  AGAGGTATTAGGGCAGGAGTGATGACAAATTATG-TTCTTTGTGGTCTAT  195
      ||| |||||| |||| |||||||||||||||||| |||||||| ||||| 
seq2  AGA-GTATTA-GGCA-GAGTGATGACAAATTATGTTTCTTTGTAGTCTAA  182

seq1  AGCATTCCAAGTTTGCACCTTCTGACACGTTGATCCTAGCTACAAAGACA  245
      |||| |||||||||||||||  ||||||||||||||||||||||||||||
seq2  AGCAATCCAAGTTTGCACCTCTTGACACGTTGATCCTAGCTACAAAGACA  232

seq1  AACT-CGACTGAGTCTGACTTTAAAATAAATTGCTGTAAACAGGACTGAA  294
      |||| |||||||||||||||||||||  || |||||||| ||||||||||
seq2  AACTCCGACTGAGTCTGACTTTAAAAATAAATGCTGTAACCAGGACTGAA  282

seq1  GAAATAGAGAACTGAAAATTTGATAATAGAAGATAAGGAAAGTGAGTTCT  344
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GAAATAGAGAACTGAAAATTTGATATTAGAAGATAAGGAAAGTGAGTTCT  332

seq1  AAAGTATAGGATGTAGCAGAAAAAAAAAA-CCTAG-CCACTTCCAGTGAT  392
      ||||||||||||||||||||||||||||| ||||| || |||||||||||
seq2  AAAGTATAGGATGTAGCAGAAAAAAAAAACCCTAGCCCCCTTCCAGTGAT  382

seq1  TGATCTAATTTTCAGGTCTGGGTGACTGTTCTTGGAAGAACCCAGTCAGA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTAATTTTCAGGTCTGGGTGACTGTTCTTGGAAGAACCCAGTCAGA  432

seq1  TGAAAACAGCAT-CCCACTATTTTTATTCTGTAGAAGGCTACAATATCAT  491
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGAAAACAGCATCCCCACTATTTTTATTCTGTAGAAGGCTACAATATCAT  482

seq1  CTTTATCAATACTAGCTTTCTTTTCTGTAACTTATACCATTTGTCTTTAC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCAATACTAGCTTTCTTTTCTGTAACTTATACCATTTGTCTTTAC  532

seq1  TATTTAATGGAGATTTACCTATCAATTTTTATAACATAAAATAATTGTAT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAATGGAGATTTACCTATCAATTTTTATAACATAAAATAATTGTAT  582

seq1  ATCTTAATGTCAATTAGATTAAGGAAAATAAAATTCTGTTCAGAGCAAAT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAATGTCAATTAGATTAAGGAAAATAAAATTCTGTTCAGAGCAAAT  632

seq1  TGCCTATAAAATTTTCTCAGTCTAATCTTGCCTTTGTTGGAAATAAGTGT  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTATAAAATTTTCTCAGTCTAATCTTGCCTTTGTTGGAAATAAGTGT  682

seq1  CTCTTTTGAAGCTATCAATTAGTACCAGAAGTTAAATCCTTATAATTTTA  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTGAAGCTATCAATTAGTACCAGAAGTTAAATCCTTATAATTTTA  732

seq1  AATCAGCTTCTTTGAAGAATTCCATGATAGGATCAGTAAGGCAGAAGAGA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAGCTTCTTTGAAGAATTCCATGATAGGATCAGTAAGGCAGAAGAGA  782

seq1  CTAAATGGTACCTCACAGTGTGAAAAACTATTGCACATGGATTTATTTCC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATGGTACCTCACAGTGTGAAAAACTATTGCACATGGATTTATTTCC  832

seq1  TTTGTTTTTTCTTTCTTTACTTTTAAAATAGCTAAATCTTACTCTCTGAA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTTTTTCTTTCTTTACTTTTAAAATAGCTAAATCTTACTCTCTGAA  882

seq1  ATTCCTCATAAAAAACATGTATCTTCTTTTACTCAAGTGGTTGTTAGTAA  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTCATAAAAAACATGTATCTTCTTTTACTCAAGTGGTTGTTAGTAA  932

seq1  CATAAACAGTTCACCTGACCTTCAGGGCTTTAGCTCTGTATTAATGGCCC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACAGTTCACCTGACCTTCAGGGCTTTAGCTCTGTATTAATGGCCC  982

seq1  TTCTTCTGTGTACTCATAGGCACAGCTGAATAAATTATACCAGGAATAAT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTGTGTACTCATAGGCACAGCTGAATAAATTATACCAGGAATAAT  1032

seq1  TAGCAAAACAAGAACAACAGGTGGCAATGTGGTCCGGCTGCCAAAACCTA  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAAACAAGAACAACAGGTGGCAATGTGGTCCGGCTGCCAAAACCTA  1082

seq1  GATTCTTAATGTCTCATGTATCTCCCCATTTCCATTGCCCAGTTTTTCTC  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCTTAATGTCTCATGTATCTCCCCATTTCCATTGCCCAGTTTTTCTC  1132

seq1  TTGATATTGGATACTGTGTTCGTTCCCCATTGCTCATTTTAATGACTACT  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATATTGGATACTGTGTTCGTTCCCCATTGCTCATTTTAATGACTACT  1182

seq1  TAACCATATGAAATATTTGTTCATGTCAAGGGAATTC  1228
      |||||||||||||||||||||||||||||||||||||
seq2  TAACCATATGAAATATTTGTTCATGTCAAGGGAATTC  1219