BAC Information

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BAC

Clone NameB6Ng01-004L02
Chromosome17 (Build37)
Map Location 54,477,500 - 54,597,384
singlet/doubletdoublet
Overlap geneLOC668529, 1700025K24Rik, Trp53-ps
Upstream geneEG629036, LOC668512, Efhb, LOC668513, Rab5a, 4921523A10Rik, Pcaf, EG628822, Sgol1, EG629065, 4932415M13Rik, Ck-ps1, EG637939, Sult1c2, LOC100043826, LOC100043471, EG668523, LOC629121, Gm324, Sult1c1, LOC100043829, EG435531, Slc5a7
Downstream geneLOC240117, EG629178, LOC100043833, LOC100043485, LOC677496, St6gal2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004L02.bB6Ng01-004L02.g
ACCDH842034DH842035
length9151,096
definitionDH842034|Mus musculus domesticus DNA, BAC clone: B6Ng01-004L02, 5' end.DH842035|Mus musculus domesticus DNA, BAC clone: B6Ng01-004L02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,477,500 - 54,478,413)(54,596,290 - 54,597,384)
sequence
gaattcacagtagcaatggttacttccataaggctgagtccatcaacatt
ctatcctgtatagaggaggttcttgtcagaataactctgtaccagtagag
ctgcaatcagttaaagtttgcagggagaggagactcgttcttcttagtga
tggagccactggtagattgacctcactcaagcaaataacccctatatatt
ctcattaaggcaactctaattaaatgtagtcaatcacacacaatacagat
atgaaagtgtaaaaagagacccgagaagaggaaaggaattagggatctct
gggaagagtgtaagagaggttaatgggagatggagattttgattacagaa
catatgtaactgtaaaagaataaaataaatacatttcacatcaagaaaaa
agtgatattatttattgggataagtattgttgatacttttcatgttttcc
ttcaattttttgaagacacatcctcttggaggagctgtgacactgaaggt
gggctttctttcctttttctatttttttattgtgggattataatataatt
acaacatctttccctctccttttctccctccaaactcttccatataacaa
cccattacactgcaccttccagtccctgcctcacaaatccctccctcttc
ccccttcccttctactctgagagggtggaggccccgtctgggtgtcccct
caccctgacatatcaagtttctgtagagctaaatccatcatcctcttcta
ctaaggccagacaaggcagcccagttaggggattgtattcctcaggtaga
caacagctttggggatagcccccactccagttgttgcaggactcacatga
agacaaagctgccatcctcctacatatgtataagggccctaagtccagcc
tttggaatgttcctt
gaattcagaacattggggcaatagtgagaagtgtgtacgtacctgccagg
aagtatagagcagattaatatattaccacttcagctccttaccacaaaaa
acacctcatagggtctttctgtataacactgggatgccttgaacttatta
tcttcctgcctctgcctcgtgagtgctgagattacaagtatgtgccatca
tatatctatatggagtcaactccctttaaatcttgaatagaacaaaacca
aaaactgaaaaatggggaggggaaaaaggggaaggaagaggaaaggcata
gggggaaagaagagtgatatcaacactcaagctacccatgagcttaccag
aaggaaatcaacaatgtgctcagaaaaccttgctcgaatgtaagatgaat
attcagccattctcaatcacaaagtcaaatataaccttaggtcagaatga
ctctcaaagataaacatagcattcatctgtgaaatacatgtatgtaaatt
aaagctttattgaggatccgagctggaaacatacacttaaaagattcaaa
taaattaaagcaaaagcccaaatacaacaaaggctaaagaggtccaacaa
ttttctaagtgttttctaaaacaaagttagcaatgaaacaataaaactat
aggtcagtaacagataaggttggatagtgttctgttatctagagaggact
gataaaaaggaaaacaggctagagagatagccctgggttgaaagtgttgt
tgtatctacatgaggtcccagagcaatagccccaggatgcatgtaaaatg
tggggctcctgtcaatttgatggagcagaagtggctgaatgctgcaggtt
taattttcccaaacagtctaacctaaatcaccatgttgaagatgcatggt
cttttgtgtcttctgaaacactgtagctcaaggtaacctttagttctgtc
tgctgattcttccatattaccatatgcataatacacacagatgggcttgc
tgtcttgggtattaatctcatcgggattttactttatttactttacacta
tattcacaataaatctctaagaatctttcaatgtctatccatgatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_54477500_54478413
seq2: B6Ng01-004L02.b_46_960

seq1  GAATTCACAGTAGCAATGGTTACTTCCATAAGGCTGAGTCCATCAACATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGTAGCAATGGTTACTTCCATAAGGCTGAGTCCATCAACATT  50

seq1  CTATCCTGTATAGAGGAGGTTCTTGTCAGAATAACTCTGTACCAGTAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCTGTATAGAGGAGGTTCTTGTCAGAATAACTCTGTACCAGTAGAG  100

seq1  CTGCAATCAGTTAAAGTTTGCAGGGAGAGGAGACTCGTTCTTCTTAGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAATCAGTTAAAGTTTGCAGGGAGAGGAGACTCGTTCTTCTTAGTGA  150

seq1  TGGAGCCACTGGTAGATTGACCTCACTCAAGCAAATAACCCCTATATATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCCACTGGTAGATTGACCTCACTCAAGCAAATAACCCCTATATATT  200

seq1  CTCATTAAGGCAACTCTAATTAAATGTAGTCAATCACACACAATACAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTAAGGCAACTCTAATTAAATGTAGTCAATCACACACAATACAGAT  250

seq1  ATGAAAGTGTAAAAAGAGACCCGAGAAGAGGAAAGGAATTAGGGATCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGTGTAAAAAGAGACCCGAGAAGAGGAAAGGAATTAGGGATCTCT  300

seq1  GGGAAGAGTGTAAGAGAGGTTAATGGGAGATGGAGATTTTGATTACAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAGTGTAAGAGAGGTTAATGGGAGATGGAGATTTTGATTACAGAA  350

seq1  CATATGTAACTGTAAAAGAATAAAATAAATACATTTCACATCAAGAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGTAACTGTAAAAGAATAAAATAAATACATTTCACATCAAGAAAAA  400

seq1  AGTGATATTATTTATTGGGATAAGTATTGTTGATACTTTTCATGTTTTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATATTATTTATTGGGATAAGTATTGTTGATACTTTTCATGTTTTCC  450

seq1  TTCAATTTTTTGAAGACACATCCTCTTGGAGGAGCTGTGACACTGAAGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTTTTTGAAGACACATCCTCTTGGAGGAGCTGTGACACTGAAGGT  500

seq1  GGGCTTTCTTTCCTTTTTCTATTTTTTTATTGTGGGATTATAATATAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTTCTTTCCTTTTTCTATTTTTTTATTGTGGGATTATAATATAATT  550

seq1  ACAACATCTTTCCCTCTCCTTTTCTCCCTCCAAACTCTTCCATATAACAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACATCTTTCCCTCTCCTTTTCTCCCTCCAAACTCTTCCATATAACAA  600

seq1  CCCATTACACTGCACCTTCCAGTCCCTGCCTCACAAATCCCTCCCTCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATTACACTGCACCTTCCAGTCCCTGCCTCACAAATCCCTCCCTCTTC  650

seq1  CCCCTTCCCTTCTACTCTGAGAGGGTGGAGGCCCCGTCTGGGTGTCCCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCCCTTCTACTCTGAGAGGGTGGAGGCCCCGTCTGGGTGTCCCCT  700

seq1  CACCCTGACATATCAAGTTTCTGTAGAGCTAAATCCATCATCCTCTTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTGACATATCAAGTTTCTGTAGAGCTAAATCCATCATCCTCTTCTA  750

seq1  CTAAGGCCAGACAAGGCAGCCCAGTTAGGGGATTGTATTCCTCAGGTAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGCCAGACAAGGCAGCCCAGTTAGGGGATTGTATTCCTCAGGTAGA  800

seq1  CAACAGCTTTAGGGATAGCCCCCACTCCAGTTGTTGCAGGACTCACATGA  850
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CAACAGCTTTGGGGATAGCCCCCACTCCAGTTGTTGCAGGACTCACATGA  850

seq1  AGACAAAGCTGCCCATCTCCTACATATGTATAAGGGCCCTAAGTCCAGCC  900
      |||||||||||||   ||||||||||||||||||||||||||||||||||
seq2  AGACAAAGCTGCCATCCTCCTACATATGTATAAGGGCCCTAAGTCCAGCC  900

seq1  TTT-GTATGTTCTTT  914
      ||| | |||||| ||
seq2  TTTGGAATGTTCCTT  915

seq1: chr17_54596290_54597384
seq2: B6Ng01-004L02.g_68_1163 (reverse)

seq1  AATCATTGGGATAGACCATTGAAAAGGATCTTAGAAGATTTTATGTGAAT  50
      ||||||  ||||||| ||||| ||||  |||||| ||||||  |||||||
seq2  AATCAT--GGATAGA-CATTG-AAAGATTCTTAG-AGATTTATTGTGAAT  45

seq1  ATAGTGT-AAGTAAATAAAAGTAAAAT-CCGATGAGATTAAATACCAAGA  98
      ||||||| |||||||| |||||||||| |||||||||||||   ||||||
seq2  ATAGTGTAAAGTAAAT-AAAGTAAAATCCCGATGAGATTAATACCCAAGA  94

seq1  CAGCAAG-CCATCTGTGTGTATTATGCATATTGGTATAATGG-AGAATCA  146
      ||||||| |||||||||||||||||||||| |||||  |||| |||||||
seq2  CAGCAAGCCCATCTGTGTGTATTATGCATA-TGGTAATATGGAAGAATCA  143

seq1  GCAGACAGAACT-AAGGTTACCTTGAGCTACAGTGTTTCAGAAGACACAA  195
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GCAGACAGAACTAAAGGTTACCTTGAGCTACAGTGTTTCAGAAGACACAA  193

seq1  AAGA-CATGCATCTTCAACATGGTGATTTAGGTTAGACTGTTT-GGAAAA  243
      |||| |||||||||||||||||||||||||||||||||||||| ||||||
seq2  AAGACCATGCATCTTCAACATGGTGATTTAGGTTAGACTGTTTGGGAAAA  243

seq1  TT-AACCTGCAGCATTCAGCCACTTCTGCTCCATCAAATTGACAGGAGCC  292
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACCTGCAGCATTCAGCCACTTCTGCTCCATCAAATTGACAGGAGCC  293

seq1  CCACATTTTACATGCATCCTGGGGCTATTGCTCTGGGACCTCATGTAGAT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATTTTACATGCATCCTGGGGCTATTGCTCTGGGACCTCATGTAGAT  343

seq1  ACAACAACACTTTCAACCCAGGGCTATCTCTCTAGCCTGTTTTCCTTTTT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACAACACTTTCAACCCAGGGCTATCTCTCTAGCCTGTTTTCCTTTTT  393

seq1  ATCAGTCCTCTCTAGATAACAGAACACTATCCAACCTTATCTGTTACTGA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTCCTCTCTAGATAACAGAACACTATCCAACCTTATCTGTTACTGA  443

seq1  CCTATAGTTTTATTGTTTCATTGCTAACTTTGTTTTAGAAAACACTTAGA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATAGTTTTATTGTTTCATTGCTAACTTTGTTTTAGAAAACACTTAGA  493

seq1  AAATTGTTGGACCTCTTTAGCCTTTGTTGTATTTGGGCTTTTGCTTTAAT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTTGGACCTCTTTAGCCTTTGTTGTATTTGGGCTTTTGCTTTAAT  543

seq1  TTATTTGAATCTTTTAAGTGTATGTTTCCAGCTCGGATCCTCAATAAAGC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTGAATCTTTTAAGTGTATGTTTCCAGCTCGGATCCTCAATAAAGC  593

seq1  TTTAATTTACATACATGTATTTCACAGATGAATGCTATGTTTATCTTTGA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTACATACATGTATTTCACAGATGAATGCTATGTTTATCTTTGA  643

seq1  GAGTCATTCTGACCTAAGGTTATATTTGACTTTGTGATTGAGAATGGCTG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCATTCTGACCTAAGGTTATATTTGACTTTGTGATTGAGAATGGCTG  693

seq1  AATATTCATCTTACATTCGAGCAAGGTTTTCTGAGCACATTGTTGATTTC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCATCTTACATTCGAGCAAGGTTTTCTGAGCACATTGTTGATTTC  743

seq1  CTTCTGGTAAGCTCATGGGTAGCTTGAGTGTTGATATCACTCTTCTTTCC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGGTAAGCTCATGGGTAGCTTGAGTGTTGATATCACTCTTCTTTCC  793

seq1  CCCTATGCCTTTCCTCTTCCTTCCCCTTTTTCCCCTCCCCATTTTTCAGT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATGCCTTTCCTCTTCCTTCCCCTTTTTCCCCTCCCCATTTTTCAGT  843

seq1  TTTTGGTTTTGTTCTATTCAAGATTTAAAGGGAGTTGACTCCATATAGAT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGTTTTGTTCTATTCAAGATTTAAAGGGAGTTGACTCCATATAGAT  893

seq1  ATATGATGGCACATACTTGTAATCTCAGCACTCACGAGGCAGAGGCAGGA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGATGGCACATACTTGTAATCTCAGCACTCACGAGGCAGAGGCAGGA  943

seq1  AGATAATAAGTTCAAGGCATCCCAGTGTTATACAGAAAGACCCTATGAGG  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAATAAGTTCAAGGCATCCCAGTGTTATACAGAAAGACCCTATGAGG  993

seq1  TGTTTTTTGTGGTAAGGAGCTGAAGTGGTAATATATTAATCTGCTCTATA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTGTGGTAAGGAGCTGAAGTGGTAATATATTAATCTGCTCTATA  1043

seq1  CTTCCTGGCAGGTACGTACACACTTCTCACTATTGCCCCAATGTTCTGAA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGGCAGGTACGTACACACTTCTCACTATTGCCCCAATGTTCTGAA  1093

seq1  TTC  1095
      |||
seq2  TTC  1096