BAC Information

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BAC

Clone NameB6Ng01-004P18
Chromosome17 (Build37)
Map Location 16,211,706 - 16,311,313
singlet/doubletdoublet
Overlap genenone
Upstream geneC330048F19, LOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3
Downstream geneLOC100041383, LOC100041394, LOC213781, LOC100041407, LOC665072, EG383211, LOC626785, LOC665085, BC002059, BC018101, Zfp97
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-004P18.bB6Ng01-004P18.g
ACCDH842246DH842247
length1,116269
definitionDH842246|Mus musculus domesticus DNA, BAC clone: B6Ng01-004P18, 5' end.DH842247|Mus musculus domesticus DNA, BAC clone: B6Ng01-004P18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,310,187 - 16,311,313)(16,211,706 - 16,211,974)
sequence
gaattctgccagcaaagggctcactgtgctttgtgatgatacacacacac
acacacacatagacacacagacacacacatctgtaattctctcccgataa
actattgctctgtgtgcaatcaagttttctatgttagtttactgagtggg
ctgggaagtaaatgaaagtcttcatgcatgttaaaaatgcgctccatctc
aaccccacacaacagctcattacataatccacctttgggttatcttggaa
aagaaagagtagcagacattacataaaccaatccacacaaactgtcaagg
tgtggaatgctaagaaggaaacgcaacaagtaccaactctgcctgaactg
agatggcttaagtttggatgatttctccttccagggtcgttagaacttgg
ccttagccttgcctgcttactaaatatacattaaaccagactgtccagtt
ccaagtctgctagctgcggggaagtaaaaaaaaaaaaaaaagaaggaaaa
agaaaaaaaaaaacacttcaggcagattgcacagtgttaagatctttgct
gctcaagggttagtgttgaaaccagtattgtaatgactagctcaggcctg
cctgaactggtgtcagaaagacacagccagatcttacctatactgttaca
taaataaacatcagaagagaagagagccagatgaaagagtggaagatgaa
ctgtagcaccagttgcatttcattttaaatgagctgtcaagctgtagatt
ggaccaatccagtgctaagttatatatttggggaaagatcccctgctata
aacctcagcacacccttctcatcgtttcctataagtagaaactataaaga
aaaccactcatcctttcagtaaaggttatgcgccatatttcaaaggttgt
ttgtttttctttttgtttgtttttatagaatcaccattatcaccagtttc
ctagctggtgtgaacaacatgggtaaatatttttaattacacgagaaaac
cattagaaaattgtagtgcaaatagaaatacttgcatgcattagtattat
tgcacttcagcattgactgtgtctcgaacagaagagaatatgaagcatcc
acactcccaaagtcaa
catagagcaaagttaagagacttttgaagctaagatatagcttattttct
ctggaaaaaagtctagtacccaaggagctaaaggggtctataaccctata
ggtggaacaacaatatgaactaaccagtacccccagagctcgtatctcta
gctgcatatgtagcagaagatggcctagtcaagccgtcattgggaagaga
ggccccttggtcttgtaaactttatatgtcccagtgcaggggaacgatag
ggccaaaaagtgggagtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_16310187_16311313
seq2: B6Ng01-004P18.b_47_1162 (reverse)

seq1  TTGACTTTTGGGAGTGTGGATGGCCTCATTATTCTCTTCTGTCTGAGACA  50
      ||||| ||||||||||||||| || ||| |||||||||||||  ||||||
seq2  TTGAC-TTTGGGAGTGTGGAT-GCTTCA-TATTCTCTTCTGTTCGAGACA  47

seq1  CATGTCCAATTGCTGAAGTTGCATAATACTAATGCATGCCAAGGTATTTC  100
      || |||  | |||||||||   |||||||||||||||||  | |||||||
seq2  CA-GTC--AATGCTGAAGTGCAATAATACTAATGCATGC--AAGTATTTC  92

seq1  TTATTTGCACTAC-ATTTTCTTATTGTTTTCTCCTTGTTAATTAAAAATT  149
       |||||||||||| ||||||| || |||||||| |   |||||||||| |
seq2  -TATTTGCACTACAATTTTCTAATGGTTTTCTCGT--GTAATTAAAAA-T  138

seq1  ATTTCCCCATGTTGTTCACACCAGCTAGGAAACTGGTGATAATGGTGATT  199
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACCCATGTTGTTCACACCAGCTAGGAAACTGGTGATAATGGTGATT  188

seq1  CTATAAAAACAAACAAAAAGAAAAACAAAACAACCTTTGAAATATGGCGC  249
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTATAAAAACAAACAAAAAGAAAAAC-AAACAACCTTTGAAATATGGCGC  237

seq1  ATAACC-TTACTGAAAGGATGAGTGGTTTTCTTTATAGTTTCTACTTATA  298
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCTTTACTGAAAGGATGAGTGGTTTTCTTTATAGTTTCTACTTATA  287

seq1  GGAAACGATGAGAAGGGTGTGCTGAGGTTTATAGCAGGGGATCTTTCCCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACGATGAGAAGGGTGTGCTGAGGTTTATAGCAGGGGATCTTTCCCC  337

seq1  AAATATATAACTTAGCACTGGATTGGTCCAATCTACAGCTTGACAGCTCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATATAACTTAGCACTGGATTGGTCCAATCTACAGCTTGACAGCTCA  387

seq1  TTTAAAATGAAATGCAACTGGTGCTACAGTTCATCTTCCACTCTTTCATC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATGAAATGCAACTGGTGCTACAGTTCATCTTCCACTCTTTCATC  437

seq1  TGGCTCTCTTCTCTTCTGATGTTTATTTATGTAACAGTATAGGTAAGATC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCTCTTCTCTTCTGATGTTTATTTATGTAACAGTATAGGTAAGATC  487

seq1  TGGCTGTGTCTTTCTGACACCAGTTCAGGCAGGCCTGAGCTAGTCATTAC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTGTCTTTCTGACACCAGTTCAGGCAGGCCTGAGCTAGTCATTAC  537

seq1  AATACTGGTTTCAACACTAACCCTTGAGCAGCAAAGATCTTAACACTGTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTGGTTTCAACACTAACCCTTGAGCAGCAAAGATCTTAACACTGTG  587

seq1  CAATCTGCCTGAAGTGTTTTTTTTTTTCTTTTTCCTTCTTTTTTTTTTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTGCCTGAAGTGTTTTTTTTTTTCTTTTTCCTTCTTTTTTTTTTTT  637

seq1  TTTTACTTCCCCGCAGCTAGCAGACTTGGAACTGGACAGTCTGGTTTAAT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTCCCCGCAGCTAGCAGACTTGGAACTGGACAGTCTGGTTTAAT  687

seq1  GTATATTTAGTAAGCAGGCAAGGCTAAGGCCAAGTTCTAACGACCCTGGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATTTAGTAAGCAGGCAAGGCTAAGGCCAAGTTCTAACGACCCTGGA  737

seq1  AGGAGAAATCATCCAAACTTAAGCCATCTCAGTTCAGGCAGAGTTGGTAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAATCATCCAAACTTAAGCCATCTCAGTTCAGGCAGAGTTGGTAC  787

seq1  TTGTTGCGTTTCCTTCTTAGCATTCCACACCTTGACAGTTTGTGTGGATT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGCGTTTCCTTCTTAGCATTCCACACCTTGACAGTTTGTGTGGATT  837

seq1  GGTTTATGTAATGTCTGCTACTCTTTCTTTTCCAAGATAACCCAAAGGTG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTATGTAATGTCTGCTACTCTTTCTTTTCCAAGATAACCCAAAGGTG  887

seq1  GATTATGTAATGAGCTGTTGTGTGGGGTTGAGATGGAGCGCATTTTTAAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATGTAATGAGCTGTTGTGTGGGGTTGAGATGGAGCGCATTTTTAAC  937

seq1  ATGCATGAAGACTTTCATTTACTTCCCAGCCCACTCAGTAAACTAACATA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGAAGACTTTCATTTACTTCCCAGCCCACTCAGTAAACTAACATA  987

seq1  GAAAACTTGATTGCACACAGAGCAATAGTTTATCGGGAGAGAATTACAGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTTGATTGCACACAGAGCAATAGTTTATCGGGAGAGAATTACAGA  1037

seq1  TGTGTGTGTCTGTGTGTCTATGTGTGTGTGTGTGTGTGTATCATCACAAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTCTGTGTGTCTATGTGTGTGTGTGTGTGTGTATCATCACAAA  1087

seq1  GCACAGTGAGCCCTTTGCTGGCAGAATTC  1127
      |||||||||||||||||||||||||||||
seq2  GCACAGTGAGCCCTTTGCTGGCAGAATTC  1116

seq1: chr17_16211706_16211974
seq2: B6Ng01-004P18.g_73_341

seq1  CATAGAGCAAAGTTAAGAGACTTTTGAAGCTAAGATATAGCTTATTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAGCAAAGTTAAGAGACTTTTGAAGCTAAGATATAGCTTATTTTCT  50

seq1  CTGGAAAAAAGTCTAGTACCCAAGGAGCTAAAGGGGTCTATAACCCTATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAAAAAGTCTAGTACCCAAGGAGCTAAAGGGGTCTATAACCCTATA  100

seq1  GGTGGAACAACAATATGAACTAACCAGTACCCCCAGAGCTCGTATCTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAACAACAATATGAACTAACCAGTACCCCCAGAGCTCGTATCTCTA  150

seq1  GCTGCATATGTAGCAGAAGATGGCCTAGTCAAGCCGTCATTGGGAAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCATATGTAGCAGAAGATGGCCTAGTCAAGCCGTCATTGGGAAGAGA  200

seq1  GGCCCCTTGGTCTTGTAAACTTTATATGTCCCAGTGCAGGGGAACGATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCTTGGTCTTGTAAACTTTATATGTCCCAGTGCAGGGGAACGATAG  250

seq1  GGCCAAAAAGTGGGAGTGG  269
      |||||||||||||||||||
seq2  GGCCAAAAAGTGGGAGTGG  269