BAC Information

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BAC

Clone NameB6Ng01-005A16
Chromosome17 (Build37)
Map Location 7,030,112 - 7,155,519
singlet/doubletdoublet
Overlap geneLOC100040654, Rshl2b, 1700122H20Rik
Upstream geneSynj2, Serac1, Gtf2h5, 2210038L17Rik, LOC545184, Tulp4, EG433058, Tmem181, LOC100040453, LOC100040471, Dynlt1, LOC547127, LOC100040488, LOC100040500, LOC100040531, LOC100040525, LOC100040563, LOC100040546, LOC100040536, LOC100040556, LOC100040603, LOC100040596, LOC100040631, LOC100040616, Sytl3, Vil2
Downstream geneTagap1, Rnaset2b, Gm1604, Rps6ka2, LOC625031, Tcp10b, LOC100038857, LOC667055, 5830477G23Rik, LOC625102, Fndc1, EG634588, LOC100040748, LOC100040760, LOC667102, Tagap, Rshl2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005A16.bB6Ng01-005A16.g
ACCDH842290DH842291
length1,1321,045
definitionDH842290|Mus musculus domesticus DNA, BAC clone: B6Ng01-005A16, 5' end.DH842291|Mus musculus domesticus DNA, BAC clone: B6Ng01-005A16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(7,154,362 - 7,155,519)(7,030,112 - 7,031,166)
sequence
gaattctacgatgaaatgaaaagaaaattacatacacagttcaagttcat
ccaaagatggaacaacaatgaaaaagacaataaaatgcacacgcgaaatg
tctaaatcctttaaggccatcttctcttactcttaactgccagctacagt
aaggtcaaattcttaaactgggaaagtacatttgtcgattgagcactggc
ctggctagcatgagtgaggacctgagggtgagcctcatattaacttaacc
ctctctggacaaaatcagccaagacatttgggcaagtttttctgcacatt
gtgcaacatttacccatagcccttaagaatcatgtttggcttctttcctt
cttgtatgaccatgtccggtccatttgttttagccttcaggacagcgcag
gcatctccccagattatctgccccctgaatgctagtttctgtccccctct
tggccaggaaaactgggtaacagtctccttgcctctgccacagagtagtt
gattctcaatgaagaaaccggagtcaggagggtcctttttaaacaaactg
tcaaacttctactcaaacctcatagtggtctttaaccctcgagtaaatgc
ccaagccttcctactgacttttggaactgacaacgtggttagtgatgtca
ttttccctttgtcctcaaggctctgcccactctatgtcttcgtcctcaag
ggtccacccactctatgtcttcgaacatgactgatgttgagagctctgtt
cctgctgcttccttgatatggaatgtttctgccagtctgaagtttcatta
cttcaccgccttctcatctttgctgggaggagagcatccttcttcagcct
tctctaatgagcctaaatccctccgtccctatacccaacctttcatgctg
cacttttttttctcttgggttcttataacagctaaattttgctcccttgc
cttgttttacgattcatctatcaaatataaattccacacagcaaagtgtt
aaattacaatagtaaaagacacaaacttctaactttagttcatgactgac
tagtgcttgtcatatagcaatactcaaattctttggcaaatcatcgaatt
ccgacaactgatgcagacaatcatgctaacac
gaattcaccatagcattggcataaggaagtcgacagggcagtggctatga
ggacactgatggagcaggagtagccaggacaagactaagatggcaagtaa
cagggcacgtgagtgggtagtaggcagcctagtcaggtgagattaagtct
agaataggtaagtatctggccagctattagtgcttgatgcttgttaataa
atataaggtctccgtgtcagtatttgagagctagcacaggcacagaaaag
ccctaaattactattacaaaggatgctttcatttattcattaagtaggta
ggaagaatgcctcaagatgggctgcagagatgatggctcagtagttaaga
acacttactcctctttcaaagaacctaggttcagttcccagaacttccat
agcagttcacagtcatctgtaggtccagttccaggggatctgatgccttc
ttctgggctctgaggcaatcaggcatatatgtggtccacatacacacatg
caggtaaaatactaatacacatagcatgcaaataactttttaaacagact
atttcaagggatgcaatgtctttacaacacagatcaaagttttaaactca
tagcaaaactacttaaaattgtttgtttttttaaagattaaaaacatttt
cattggggttggagagatggctcagcagttaagaggattgactgctcttc
ggaaggtccttgagttcaaatcccagcaaccacatggtggcttcacaacc
aattgtaatgggatctgatgtcctcttctggggtgtctgaaaacagctac
atattaaggggccagagccagaggggcatagcgagaagaaaaagttgtct
gaagacagctacagtgtacttacatttaacaaataatctttaaaaaaatt
tttgtgcatgtcttggaccactgtttgcatgtgccaaagaggcaatgagg
gcaactgtatcccctgtactagaggtacatggtgctgctttgagctgcca
tgtgggtgctggcactaatcttaatcatctccacgtctgcactag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_7154362_7155519
seq2: B6Ng01-005A16.b_45_1176 (reverse)

seq1  GTGTTTGGCATGATTGTCTTGCATCCAGTTGTCTGAAATTCGATGATTTG  50
      ||| || ||||||||||| ||||| |||||||| | ||||||||||||||
seq2  GTG-TTAGCATGATTGTC-TGCAT-CAGTTGTC-GGAATTCGATGATTTG  46

seq1  GCCCAAAGGATTTTGAGTATTTGCTATATGACAAGCACTAGTCAGTCATT  100
        ||||| || |||||||| ||||||||||||||||||||||||||||| 
seq2  --CCAAA-GAATTTGAGTA-TTGCTATATGACAAGCACTAGTCAGTCAT-  91

seq1  GGAAACTAAAGGTTTAGAAGTTTTGTTTGTCTTTTTTTTTTTTTTTTTTG  150
         ||||||||  |||||||||   | ||||        ||||  | |||
seq2  --GAACTAAAG--TTAGAAGTT---TGTGTC--------TTTTACTATTG  126

seq1  TAATTTAACACTTTTGCCTGTGTGGAATTTATATTTTGATAGATGAATCG  200
      ||||||||||||||   |||||||||||||||| ||||||||||||||||
seq2  TAATTTAACACTTT--GCTGTGTGGAATTTATA-TTTGATAGATGAATCG  173

seq1  TAAAAACAAGGCAAGGGAGCAAAATTTAGCTGTTATAAGAA-CCAAGAG-  248
      | ||||||||||||||||||||||||||||||||||||||| ||||||| 
seq2  T-AAAACAAGGCAAGGGAGCAAAATTTAGCTGTTATAAGAACCCAAGAGA  222

seq1  AAAAAAAGTGCAGCATGAAAGGTTGGGTATAGGGACGGAGGGATTTTAGG  298
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AAAAAAAGTGCAGCATGAAAGGTTGGGTATAGGGACGGAGGGA-TTTAGG  271

seq1  CTCATTAGAGAAGGCTGAAGAAGGATGCTCTCCTCCCAGCAAAGATGAGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTAGAGAAGGCTGAAGAAGGATGCTCTCCTCCCAGCAAAGATGAGA  321

seq1  AGGCGGTGAAGTAATGAAACTTCAGACTGGCAG-AACATTCCATATCAAG  397
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AGGCGGTGAAGTAATGAAACTTCAGACTGGCAGAAACATTCCATATCAAG  371

seq1  GAAGCAGCAGGAACAGAGCTCTCAACATCAGTCATGTTCGAAGACATAGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGCAGGAACAGAGCTCTCAACATCAGTCATGTTCGAAGACATAGA  421

seq1  GTGGGTGGACCCTTGAGGACGAAGACATAGAGTGGGCAGAGCCTTGAGGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTGGACCCTTGAGGACGAAGACATAGAGTGGGCAGAGCCTTGAGGA  471

seq1  CAAAGGGAAAATGACATCACTAACCACGTTGTCAGTTCCAAAAGTCAGTA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGAAAATGACATCACTAACCACGTTGTCAGTTCCAAAAGTCAGTA  521

seq1  GGAAGGCTTGGGCATTTACTCGAGGGTTAAAGACCACTATGAGGTTTGAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCTTGGGCATTTACTCGAGGGTTAAAGACCACTATGAGGTTTGAG  571

seq1  TAGAAGTTTGACAGTTTGTTTAAAAAGGACCCTCCTGACTCCGGTTTCTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTTTGACAGTTTGTTTAAAAAGGACCCTCCTGACTCCGGTTTCTT  621

seq1  CATTGAGAATCAACTACTCTGTGGCAGAGGCAAGGAGACTGTTACCCAGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGAGAATCAACTACTCTGTGGCAGAGGCAAGGAGACTGTTACCCAGT  671

seq1  TTTCCTGGCCAAGAGGGGGACAGAAACTAGCATTCAGGGGGCAGATAATC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGGCCAAGAGGGGGACAGAAACTAGCATTCAGGGGGCAGATAATC  721

seq1  TGGGGAGATGCCTGCGCTGTCCTGAAGGCTAAAACAAATGGACCGGACAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGAGATGCCTGCGCTGTCCTGAAGGCTAAAACAAATGGACCGGACAT  771

seq1  GGTCATACAAGAAGGAAAGAAGCCAAACATGATTCTTAAGGGCTATGGGT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATACAAGAAGGAAAGAAGCCAAACATGATTCTTAAGGGCTATGGGT  821

seq1  AAATGTTGCACAATGTGCAGAAAAACTTGCCCAAATGTCTTGGCTGATTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTGCACAATGTGCAGAAAAACTTGCCCAAATGTCTTGGCTGATTT  871

seq1  TGTCCAGAGAGGGTTAAGTTAATATGAGGCTCACCCTCAGGTCCTCACTC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAGAGAGGGTTAAGTTAATATGAGGCTCACCCTCAGGTCCTCACTC  921

seq1  ATGCTAGCCAGGCCAGTGCTCAATCGACAAATGTACTTTCCCAGTTTAAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTAGCCAGGCCAGTGCTCAATCGACAAATGTACTTTCCCAGTTTAAG  971

seq1  AATTTGACCTTACTGTAGCTGGCAGTTAAGAGTAAGAGAAGATGGCCTTA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGACCTTACTGTAGCTGGCAGTTAAGAGTAAGAGAAGATGGCCTTA  1021

seq1  AAGGATTTAGACATTTCGCGTGTGCATTTTATTGTCTTTTTCATTGTTGT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTTAGACATTTCGCGTGTGCATTTTATTGTCTTTTTCATTGTTGT  1071

seq1  TCCATCTTTGGATGAACTTGAACTGTGTATGTAATTTTCTTTTCATTTCA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTTTGGATGAACTTGAACTGTGTATGTAATTTTCTTTTCATTTCA  1121

seq1  TCGTAGAATTC  1158
      |||||||||||
seq2  TCGTAGAATTC  1132

seq1: chr17_7030112_7031166
seq2: B6Ng01-005A16.g_69_1113

seq1  GAATTCACCATAGCATTGGCATAAGGAAGTCGACAGGGCAGTGGCTATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCATAGCATTGGCATAAGGAAGTCGACAGGGCAGTGGCTATGA  50

seq1  GGACACTGATGGAGCAGGAGTAGCCAGGACAAGACTAAGATGGCAAGTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACTGATGGAGCAGGAGTAGCCAGGACAAGACTAAGATGGCAAGTAA  100

seq1  CAGGGCACGTGAGTGGGTAGTAGGCAGCCTAGTCAGGTGAGATTAAGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCACGTGAGTGGGTAGTAGGCAGCCTAGTCAGGTGAGATTAAGTCT  150

seq1  AGAATAGGTAAGTATCTGGCCAGCTATTAGTGCTTGATGCTTGTTAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGGTAAGTATCTGGCCAGCTATTAGTGCTTGATGCTTGTTAATAA  200

seq1  ATATAAGGTCTCCGTGTCAGTATTTGAGAGCTAGCACAGGCACAGAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAAGGTCTCCGTGTCAGTATTTGAGAGCTAGCACAGGCACAGAAAAG  250

seq1  CCCTAAATTACTATTACAAAGGATGCTTTCATTTATTCATTAAGTAGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAATTACTATTACAAAGGATGCTTTCATTTATTCATTAAGTAGGTA  300

seq1  GGAAGAATGCCTCAAGATGGGCTGCAGAGATGATGGCTCAGTAGTTAAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAATGCCTCAAGATGGGCTGCAGAGATGATGGCTCAGTAGTTAAGA  350

seq1  ACACTTACTCCTCTTTCAAAGAACCTAGGTTCAGTTCCCAGAACTTCCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTACTCCTCTTTCAAAGAACCTAGGTTCAGTTCCCAGAACTTCCAT  400

seq1  AGCAGTTCACAGTCATCTGTAGGTCCAGTTCCAGGGGATCTGATGCCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTTCACAGTCATCTGTAGGTCCAGTTCCAGGGGATCTGATGCCTTC  450

seq1  TTCTGGGCTCTGAGGCAATCAGGCATATATGTGGTCCACATACACACATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGCTCTGAGGCAATCAGGCATATATGTGGTCCACATACACACATG  500

seq1  CAGGTAAAATACTAATACACATAGCATGCAAATAACTTTTTAAACAGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAAAATACTAATACACATAGCATGCAAATAACTTTTTAAACAGACT  550

seq1  ATTTCAAGGGATGCAATGTCTTTACAACACAGATCAAAGTTTTAAACTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAGGGATGCAATGTCTTTACAACACAGATCAAAGTTTTAAACTCA  600

seq1  TAGCAAAACTACTTAAAATTGTTTGTTTTTTTAAAGATTAAAAACATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAAACTACTTAAAATTGTTTGTTTTTTTAAAGATTAAAAACATTTT  650

seq1  CATTGGGGTTGGAGAGATGGCTCAGCAGTTAAGAGGATTGACTGCTCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGGGGTTGGAGAGATGGCTCAGCAGTTAAGAGGATTGACTGCTCTTC  700

seq1  GGAAGGTCC-TGAGTTCAAATCCCAGCAACCACATGGTGGC-TCACAACC  748
      ||||||||| ||||||||||||||||||||||||||||||| ||||||||
seq2  GGAAGGTCCTTGAGTTCAAATCCCAGCAACCACATGGTGGCTTCACAACC  750

seq1  AATTGTAATGGGATCTGATGTCCTCTTCTGGGGTGTCTGAAAACAGCTAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTAATGGGATCTGATGTCCTCTTCTGGGGTGTCTGAAAACAGCTAC  800

seq1  ATA-TAAGGGGCCAGAGCCAGAGGGGCAGAGCGAGAAGAAAAAG-TGTCT  846
      ||| |||||||||||||||||||||||| ||||||||||||||| |||||
seq2  ATATTAAGGGGCCAGAGCCAGAGGGGCATAGCGAGAAGAAAAAGTTGTCT  850

seq1  GAAGACAGCTACAGTGTACTTACATATAACAAATAAATCTTTAAAAAAAT  896
      ||||||||||||||||||||||||| |||||||| |||||||||||||||
seq2  GAAGACAGCTACAGTGTACTTACATTTAACAAAT-AATCTTTAAAAAAAT  899

seq1  TTTATGTGCATGTACATGGACCACTGTATGCATGTGCCAAAAGAGGCCAA  946
      ||| ||||||||| | ||||||||||| |||||||||| ||||||||  |
seq2  TTT-TGTGCATGT-CTTGGACCACTGTTTGCATGTGCC-AAAGAGGC--A  944

seq1  ATGAGGGCAACTGTATCCCCTGTAACTAGAGGTACAGTGGTGCTGCTGTG  996
      ||||||||||||||||||||||| |||||||||||| |||||||||| ||
seq2  ATGAGGGCAACTGTATCCCCTGT-ACTAGAGGTACA-TGGTGCTGCTTTG  992

seq1  AGCTGCCCAATGTGGGTGCTGGCACCTAAATCTTAATCATCTCCACGGCC  1046
      |||||||  ||||||||||||||||   |||||||||||||||||| | |
seq2  AGCTGCC--ATGTGGGTGCTGGCAC--TAATCTTAATCATCTCCAC-GTC  1037

seq1  TGCAACTAG  1055
      ||| |||||
seq2  TGC-ACTAG  1045