BAC Information

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BAC

Clone NameB6Ng01-005C08
Chromosome17 (Build37)
Map Location 36,131,161 - 36,252,172
singlet/doubletdoublet
Overlap geneH2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik
Upstream geneVars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1
Downstream geneH2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005C08.bB6Ng01-005C08.g
ACCDH842363DH842364
length637903
definitionDH842363|Mus musculus domesticus DNA, BAC clone: B6Ng01-005C08, 5' end.DH842364|Mus musculus domesticus DNA, BAC clone: B6Ng01-005C08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,131,161 - 36,131,795)(36,251,271 - 36,252,172)
sequence
gaattcactctgtagaccaggctggcctcgaactcagacaccaacctgcc
tgcctagtgccgagtgttaggattaaaggtgtgtgccaccacggccagct
cgagataatttctaataccatctgacagtccattctttgggtgaaatggt
cccccataggttcaagtgtttgaacggtcggtccccagctgctagcggtt
tttggggaacctttaagaaggtggagccttgatagcggaagtcccaccca
acgggtgaagaagacggatgtgtttcgcccgtgggcttggctttgcgtct
agtccggcgtcgcagaccggtttcgccatgtctcttcctcaaacggtaag
cccacgaaaaccttttaaagtcgctgtttgtttgttttggtcagaaatgt
cggttatcaaatctagaaaagcgtacaatcgtcaagccttcgcaacttga
agcgcctactatagtatttttcattttaattttctcggctcaactaagct
tacttagtagatttattcattcatttcaggacaggttttctctgtgtagc
cctgacttttcctggagctcgatctgttgactaggctggcctcgaaccca
gatctattctgcctaggccttcggagtgctggaaata
gaattcaagacctctggacgactagtcagtgctcttatccactgagccat
ctcgccagtcctaaggatcctatcttgagttatttataagctgcgattct
tgcatgtgcttgtaagacccattattacaacagctcaataccacatctct
gttttgttctctacgaaataaaaatcctactttgacatattgaaaaaggg
ccaggaaagaagtttccacaaagtcatggggatggctagctctgagaata
cattgttacctgcaaagacggctgattctatattggtcctaccagcacac
tgtggagtccatctgagaaccaacaacccacctaagaactgacaactgga
aatcttaggttcttgtggaccagctgaagtatctgccatctgactaacac
tgtggcaggcgttaggcaatgccatttgttacaagataatggggtcactc
gccctacaatcatgtctctttaaaactcaaaatgtgttatgtctataaaa
ttaatgtttcttgatggatgttggtggcacacacctttaatgccagcacc
tgacagacagaggcaggtggatctctgagaattccaggtcagccttgtct
aaaggatagaaagaaagaaagaaacaaagaaagaactaaataaagcaata
aaataaaagaataacagttcaggacacaaccatgaactttgaacagagaa
cttcatcccaacacagcccagaggcagggcagaaacaaatgtttctcagg
gtggccaccaggtggcagtgtgctcctggctgaaaaggctttagaggtgc
tcataagctgcacaagcttacaaaacaaagtcatcccgttctgggaagtc
tttgaaggctgcagcgtgagctctgggcctcaaccactttctgtatatgg
tct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_36131161_36131795
seq2: B6Ng01-005C08.b_44_680

seq1  GAATTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGACACCAACCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGGCTGGCCTCGAACTCAGACACCAACCTGCC  50

seq1  TGCCTAGTGCCGAGTGTTAGGATTAAAGGTGTGTGCCACCACGGCCAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTAGTGCCGAGTGTTAGGATTAAAGGTGTGTGCCACCACGGCCAGCT  100

seq1  CGAGATAATTTCTAATACCATCTGACAGTCCATTCTTTGGGTGAAATGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGATAATTTCTAATACCATCTGACAGTCCATTCTTTGGGTGAAATGGT  150

seq1  CCCCCATAGGTTCAAGTGTTTGAACGGTCGGTCCCCAGCTGCTAGCGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCATAGGTTCAAGTGTTTGAACGGTCGGTCCCCAGCTGCTAGCGGTT  200

seq1  TTTGGGGAACCTTTAAGAAGGTGGAGCCTTGATAGCGGAAGTCCCACCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGGAACCTTTAAGAAGGTGGAGCCTTGATAGCGGAAGTCCCACCCA  250

seq1  ACGGGTGAAGAAGACGGATGTGTTTCGCCCGTGGGCTTGGCTTTGCGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGTGAAGAAGACGGATGTGTTTCGCCCGTGGGCTTGGCTTTGCGTCT  300

seq1  AGTCCGGCGTCGCAGACCGGTTTCGCCATGTCTCTTCCTCAAACGGTAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCGGCGTCGCAGACCGGTTTCGCCATGTCTCTTCCTCAAACGGTAAG  350

seq1  CCCACGAAAACCTTTTAAAGTCGCTGTTTGTTTGTTTTGGTCAGAAATGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACGAAAACCTTTTAAAGTCGCTGTTTGTTTGTTTTGGTCAGAAATGT  400

seq1  CGGTTATCAAATCTAGAAAAGCGTACAATCGTCAAGCCTTCGCAACTTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGTTATCAAATCTAGAAAAGCGTACAATCGTCAAGCCTTCGCAACTTGA  450

seq1  AGCGCCTACTATAGTATTTTTCATTTTAATTTTCTCGGCTCAACTAAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGCCTACTATAGTATTTTTCATTTTAATTTTCTCGGCTCAACTAAGCT  500

seq1  TACTTAGTAGATTTATTCATTCATTTCAGGACAGGTTTTCTCTGTGTAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTAGTAGATTTATTCATTCATTTCAGGACAGGTTTTCTCTGTGTAGC  550

seq1  CCTGAC-TTTCCTGGAGCTCGATCTGTTGACTAGGCTGGCCTCGAACCCA  599
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTTTTCCTGGAGCTCGATCTGTTGACTAGGCTGGCCTCGAACCCA  600

seq1  GATCTA-TCTGCCTAGGCCTACGGAGTGCTGGAAATA  635
      |||||| ||||||||||||| ||||||||||||||||
seq2  GATCTATTCTGCCTAGGCCTTCGGAGTGCTGGAAATA  637

seq1: chr17_36251271_36252172
seq2: B6Ng01-005C08.g_70_972 (reverse)

seq1  AGACAATATACAGAAAGTGGTTGAGGCCCAGAGCTCACGCTGCAGCCTTC  50
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCATATACAGAAAGTGGTTGAGGCCCAGAGCTCACGCTGCAGCCTTC  50

seq1  AAGGACTTCCCAGAACGGGGTGACTTTGTTTTTGTAAGCTTGTGCAGCTT  100
      || |||||||||||||||| |||||||| |||||||||||||||||||||
seq2  AAAGACTTCCCAGAACGGGATGACTTTG-TTTTGTAAGCTTGTGCAGCTT  99

seq1  ATGGGCACCTCTAAAGCCTTTTCAGCCAGGAGCACACTGCCACCTGGTGG  150
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCACCTCTAAAGCCTTTTCAGCCAGGAGCACACTGCCACCTGGTGG  149

seq1  CCACCCTGAGAAACATTTGTTTCTG-CCTGCCTCTGGGCTGTGTTGGGAT  199
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CCACCCTGAGAAACATTTGTTTCTGCCCTGCCTCTGGGCTGTGTTGGGAT  199

seq1  G-AGTTCTCTGTTCAAAGTTCATGGTTGTGTCCTGAACTGTTATTCTTTT  248
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTCTCTGTTCAAAGTTCATGGTTGTGTCCTGAACTGTTATTCTTTT  249

seq1  ATTTTATTGCTTTATTTAGTTCTTTCTTTGTTTCTTTCTTTCTTTCTATC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTGCTTTATTTAGTTCTTTCTTTGTTTCTTTCTTTCTTTCTATC  299

seq1  CTTTAGACAAGGCTGACCTGGAATTCTCAGAGATCCACCTGCCTCTGTCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGACAAGGCTGACCTGGAATTCTCAGAGATCCACCTGCCTCTGTCT  349

seq1  GTCAGGTGCTGGCATTAAAGGTGTGTGCCACCAACATCCATCAAGAAACA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGGTGCTGGCATTAAAGGTGTGTGCCACCAACATCCATCAAGAAACA  399

seq1  TTAATTTTATAGACATAACACATTTTGAGTTTTAAAGAGACATGATTGTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTATAGACATAACACATTTTGAGTTTTAAAGAGACATGATTGTA  449

seq1  GGGCGAGTGACCCCATTATCTTGTAACAAATGGCATTGCCTAACGCCTGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGAGTGACCCCATTATCTTGTAACAAATGGCATTGCCTAACGCCTGC  499

seq1  CACAGTGTTAGTCAGATGGCAGATACTTCAGCTGGTCCACAAGAACCTAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGTTAGTCAGATGGCAGATACTTCAGCTGGTCCACAAGAACCTAA  549

seq1  GATTTCCAGTTGTCAGTTCTTAGGTGGGTTGTTGGTTCTCAGATGGACTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCCAGTTGTCAGTTCTTAGGTGGGTTGTTGGTTCTCAGATGGACTC  599

seq1  CACAGTGTGCTGGTAGGACCAATATAGAATCAGCCGTCTTTGCAGGTAAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGTGCTGGTAGGACCAATATAGAATCAGCCGTCTTTGCAGGTAAC  649

seq1  AATGTATTCTCAGAGCTAGCCATCCCCATGACTTTGTGGAAACTTCTTTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTATTCTCAGAGCTAGCCATCCCCATGACTTTGTGGAAACTTCTTTC  699

seq1  CTGGCCCTTTTTCAATATGTCAAAGTAGGATTTTTATTTCGTAGAGAACA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCCCTTTTTCAATATGTCAAAGTAGGATTTTTATTTCGTAGAGAACA  749

seq1  AAACAGAGATGTGGTATTGAGCTGTTGTAATAATGGGTCTTACAAGCACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGAGATGTGGTATTGAGCTGTTGTAATAATGGGTCTTACAAGCACA  799

seq1  TGCAAGAATCGCAGCTTATAAATAACTCAAGATAGGATCCTTAGGACTGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGAATCGCAGCTTATAAATAACTCAAGATAGGATCCTTAGGACTGG  849

seq1  CGAGATGGCTCAGTGGATAAGAGCACTGACTAGTCGTCCAGAGGTCTTGA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGATGGCTCAGTGGATAAGAGCACTGACTAGTCGTCCAGAGGTCTTGA  899

seq1  ATTC  902
      ||||
seq2  ATTC  903