BAC Information

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BAC

Clone NameB6Ng01-005E15
Chromosome17 (Build37)
Map Location 4,358,225 - 4,528,214
singlet/doubletdoublet
Overlap genenone
Upstream geneTiam2, LOC630810, Tfb1m, Cldn20, 1700102H20Rik, Nox3, 4930470H14Rik
Downstream genePpia-ps17_26.1, Arid1b, 5730437N04Rik, Ldhal6b, LOC100040282, LOC666919, LOC100040312, Zdhhc14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005E15.bB6Ng01-005E15.g
ACCDH842464DH842465
length1,112792
definitionDH842464|Mus musculus domesticus DNA, BAC clone: B6Ng01-005E15, 5' end.DH842465|Mus musculus domesticus DNA, BAC clone: B6Ng01-005E15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,527,091 - 4,528,214)(4,358,225 - 4,359,016)
sequence
gaattcttggattatttgctgtgagtatattcaacttcataagagattac
cggcatccgaagggccgaggaaggaggatcttgggtttgagaccagcttt
ggctacaataggaagagagtttgggccagcctgggctacaataagcagcg
aggttgaagagatggctcatcaggtaaatgcttgctgtgcaccgagttct
tttaatgatccatttaatgcccgtgatattgataattggccccttaatct
tcagtattaataatttgtgtcttttctcttttcctcagagcctgactaga
ggcatttaaaactttatttatctttacagacaagtgtgtaccagttagtt
tgttctgttgatttctttctttctttctttttttaatttcatggatctct
gcttttaggacttattacttatttttctactttagatttcagttagcttt
taaaatgttcttacattttgatgagcatgtataagttctccatattgata
tggatcagtgtggctttttcccatgtactcatacgagacctgaccaaatc
tggtctccctttccccagcccacttcctggactctgaatcactgtcgtac
acagaggttaacttgattcaaaacaatgcaggctcccaggagtgttttct
gattcctcatcctacaaggtatggacagcaccccaaagacttcacaacgt
tgttgaatcttttcttctctaacaaatttgctcagtctctccatttcctc
ttaagcaccggttcagcctcatctcataagtttttgatacaatgtatttg
cattcaaaatgctggaaccgttgtgagatttggaggccagtgattggctc
accagtaagggtgcttgctatcaagcctgatgagaactctttccacaagt
tgtcctctgaactccacatatgccctttggcatgtatttacccagagact
tagtacacacacacacacacacacacagaatttttgttgtgtgtttgtaa
agaactctatgggtgtcctgccggcctacaactcactctgtaaataagga
tggctcaacatagaactgtctgcacatcctctcgggggctgggattaaag
gcggggtcacca

tctgacctgcctggtactatttaaagactgggtgggccttcacttctgca
gtttctgcaaatagctaattcagtatttgacagcctgggtttcaaatact
ggcagacaactggtaacactggaggccagttcaacaatgaggtcgtgtca
aagtcatccgtgtagaagacacagccgaggccacagatgtggagaaccta
aaatatgtggaattagcctgcaggtaaggatggttccctgaggaatccat
gcttcagtaaatgataaagagaaagaagtagagaaaacaggaagaactgg
ttttaaagaaaatgggagcaatgagcttcaaggaggaagagtcaatacag
ttgtcaggttggagctgtgagagaagacaggaggaaagatgacttcttcc
atctttgatagtgagatgtgaaccatcactgactttctcagagccactcc
tgtgagaaagatgtgggctgaagatgcagcagaagcagaatcaaatccgt
gggatcaagtgtcagtcaagaaatactaggtgtttgttttagagggagtt
ggaaagggtaactgttgagggagacacagaagttttttgtagggtgtgtt
tttctcctaagatgaaggagatcgaagtatgcttatagccagagggggaa
ggaacctgtgcacagaaaaaaatacttgaatatttaataaaaagagagaa
taattgatgtagtacagactttggggaaacttgaggagatgagacaagag
ttcacaggagctcagtgttagcctgcctaagaggagaagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_4527091_4528214
seq2: B6Ng01-005E15.b_45_1156 (reverse)

seq1  TGGTGACACACGCCTTTAATCCCAGCACCCAGGAGGATGTGGCAGACAGA  50
      ||||||| | |||||||||||||||| |||  |||||||| |||||||| 
seq2  TGGTGAC-CCCGCCTTTAATCCCAGCCCCCGAGAGGATGT-GCAGACAGT  48

seq1  TCTCTGAGTTAGAGGCCTGCCTAGTTTACAGAGTGAGTTGTAGGACAGGC  100
      ||| ||   | || |||  |||  |||||||||||||||||||| | |||
seq2  TCTATG---TTGA-GCCATCCTTATTTACAGAGTGAGTTGTAGG-CCGGC  93

seq1  AGGACAACACATAGAAGTTCTATACAAACAACAACAACAAAAATACTGTG  150
      ||||| || ||||| |||||| ||||||||   ||||||||||| |||||
seq2  AGGAC-ACCCATAG-AGTTCTTTACAAACA--CACAACAAAAATTCTGTG  139

seq1  TGTGTGTGTGTGTGTGTGTACTAAGTCTCTGGGGTACATACATGCCAAAG  200
      |||||||||||||||||||||||||||||| ||||| |||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTACTAAGTCTCT-GGGTAAATACATGCCAAAG  188

seq1  GGCATATGTGGAGTTCAGAGGACAACTTGTGGGAAAGAGTTCTCATCAGG  250
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGCATATGTGGAGTTCAGAGGACAACTTGT-GGAAAGAGTTCTCATCAGG  237

seq1  CTTGATAGCAAGCACCCTTACTGGTGAGCCAATTCACTGGCCTCC-AATC  299
      |||||||||||||||||||||||||||||||| |||||||||||| ||||
seq2  CTTGATAGCAAGCACCCTTACTGGTGAGCCAA-TCACTGGCCTCCAAATC  286

seq1  TCACAACGGTTCCAGCATTTTGAATGCAAATACATTGTATC-AAAACTTA  348
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TCACAACGGTTCCAGCATTTTGAATGCAAATACATTGTATCAAAAACTTA  336

seq1  TGAGATGAGGCTGAACCGGTGCTTAAGAGGAAATGGAGAGACTGAGCAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGAGGCTGAACCGGTGCTTAAGAGGAAATGGAGAGACTGAGCAAA  386

seq1  TTTGTTAGAGAAG-AAAGATTCAAACAACGTTGTGAAGTCTTTGGGGTGC  447
      ||||||||||||| |||||||| |||||||||||||||||||||||||||
seq2  TTTGTTAGAGAAGAAAAGATTC-AACAACGTTGTGAAGTCTTTGGGGTGC  435

seq1  TGTCCATACCTTGTAGGATGAGGAATCAGAAAACACTCCTGGGAGCCTGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCATACCTTGTAGGATGAGGAATCAGAAAACACTCCTGGGAGCCTGC  485

seq1  ATTGTTTTGAATCAAGTTAACCTCTGTGTACGACAGTGATTCAGAGTCCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTTTGAATCAAGTTAACCTCTGTGTACGACAGTGATTCAGAGTCCA  535

seq1  GGAAGTGGGCTGGGGAAAGGGAGACCAGATTTGGTCAGGTCTCGTATGAG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGGGCTGGGGAAAGGGAGACCAGATTTGGTCAGGTCTCGTATGAG  585

seq1  TACATGGGAAAAAGCCACACTGATCCATATCAATATGGAGAACTTATACA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATGGGAAAAAGCCACACTGATCCATATCAATATGGAGAACTTATACA  635

seq1  TGCTCATCAAAATGTAAGAACATTTTAAAAGCTAACTGAAATCTAAAGTA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATCAAAATGTAAGAACATTTTAAAAGCTAACTGAAATCTAAAGTA  685

seq1  GAAAAATAAGTAATAAGTCCTAAAAGCAGAGATCCATGAAATTAAAAAAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATAAGTAATAAGTCCTAAAAGCAGAGATCCATGAAATTAAAAAAA  735

seq1  GAAAGAAAGAAAGAAATCAACAGAACAAACTAACTGGTACACACTTGTCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAGAAAGAAATCAACAGAACAAACTAACTGGTACACACTTGTCT  785

seq1  GTAAAGATAAATAAAGTTTTAAATGCCTCTAGTCAGGCTCTGAGGAAAAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGATAAATAAAGTTTTAAATGCCTCTAGTCAGGCTCTGAGGAAAAG  835

seq1  AGAAAAGACACAAATTATTAATACTGAAGATTAAGGGGCCAATTATCAAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGACACAAATTATTAATACTGAAGATTAAGGGGCCAATTATCAAT  885

seq1  ATCACGGGCATTAAATGGATCATTAAAAGAACTCGGTGCACAGCAAGCAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACGGGCATTAAATGGATCATTAAAAGAACTCGGTGCACAGCAAGCAT  935

seq1  TTACCTGATGAGCCATCTCTTCAACCTCGCTGCTTATTGTAGCCCAGGCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTGATGAGCCATCTCTTCAACCTCGCTGCTTATTGTAGCCCAGGCT  985

seq1  GGCCCAAACTCTCTTCCTATTGTAGCCAAAGCTGGTCTCAAACCCAAGAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAAACTCTCTTCCTATTGTAGCCAAAGCTGGTCTCAAACCCAAGAT  1035

seq1  CCTCCTTCCTCGGCCCTTCGGATGCCGGTAATCTCTTATGAAGTTGAATA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTTCCTCGGCCCTTCGGATGCCGGTAATCTCTTATGAAGTTGAATA  1085

seq1  TACTCACAGCAAATAATCCAAGAATTC  1124
      |||||||||||||||||||||||||||
seq2  TACTCACAGCAAATAATCCAAGAATTC  1112


seq1: chr17_4358225_4359016
seq2: B6Ng01-005E15.g_79_870

seq1  TCTGACCTGCCTGGTACTATTTAAAGACTGGGTGGGCCTTCACTTCTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACCTGCCTGGTACTATTTAAAGACTGGGTGGGCCTTCACTTCTGCA  50

seq1  GTTTCTGCAAATAGCTAATTCAGTATTTGACAGCCTGGGTTTCAAATACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGCAAATAGCTAATTCAGTATTTGACAGCCTGGGTTTCAAATACT  100

seq1  GGCAGACAACTGGTAACACTGGAGGCCAGTTCAACAATGAGGTCGTGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGACAACTGGTAACACTGGAGGCCAGTTCAACAATGAGGTCGTGTCA  150

seq1  AAGTCATCCGTGTAGAAGACACAGCCGAGGCCACAGATGTGGAGAACCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATCCGTGTAGAAGACACAGCCGAGGCCACAGATGTGGAGAACCTA  200

seq1  AAATATGTGGAATTAGCCTGCAGGTAAGGATGGTTCCCTGAGGAATCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATGTGGAATTAGCCTGCAGGTAAGGATGGTTCCCTGAGGAATCCAT  250

seq1  GCTTCAGTAAATGATAAAGAGAAAGAAGTAGAGAAAACAGGAAGAACTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAGTAAATGATAAAGAGAAAGAAGTAGAGAAAACAGGAAGAACTGG  300

seq1  TTTTAAAGAAAATGGGAGCAATGAGCTTCAAGGAGGAAGAGTCAATACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAGAAAATGGGAGCAATGAGCTTCAAGGAGGAAGAGTCAATACAG  350

seq1  TTGTCAGGTTGGAGCTGTGAGAGAAGACAGGAGGAAAGATGACTTCTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAGGTTGGAGCTGTGAGAGAAGACAGGAGGAAAGATGACTTCTTCC  400

seq1  ATCTTTGATAGTGAGATGTGAACCATCACTGACTTTCTCAGAGCCACTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTGATAGTGAGATGTGAACCATCACTGACTTTCTCAGAGCCACTCC  450

seq1  TGTGAGAAAGATGTGGGCTGAAGATGCAGCAGAAGCAGAATCAAATCCGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGAAAGATGTGGGCTGAAGATGCAGCAGAAGCAGAATCAAATCCGT  500

seq1  GGGATCAAGTGTCAGTCAAGAAATACTAGGTGTTTGTTTTAGAGGGAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCAAGTGTCAGTCAAGAAATACTAGGTGTTTGTTTTAGAGGGAGTT  550

seq1  GGAAAGGGTAACTGTTGAGGGAGACACAGAAG-TTTTTGTAGGGTGTGTT  599
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGAAAGGGTAACTGTTGAGGGAGACACAGAAGTTTTTTGTAGGGTGTGTT  600

seq1  TTTCTCCTAAGATGAAGGAGATCGAAGTATGCTTATAGCCAGAGGGGGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCTAAGATGAAGGAGATCGAAGTATGCTTATAGCCAGAGGGGGAA  650

seq1  GGAACCTGTGCACAGAAAAAAATACTTGAAGATTTAATAAAAAGAGAGAA  699
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGAACCTGTGCACAGAAAAAAATACTTGAATATTTAATAAAAAGAGAGAA  700

seq1  TAATTGATGTAGTACAGACTTTGGGGAAACATGAGGAGATGAGACAAAGA  749
      |||||||||||||||||||||||||||||| |||||||||||||| ||||
seq2  TAATTGATGTAGTACAGACTTTGGGGAAACTTGAGGAGATGAGAC-AAGA  749

seq1  GTTCACAGGAGC-CAGTGTTAGCCTGCCAAAGAGGAGAGAGAGA  792
      |||||||||||| ||||||||||||||| ||||||||| |||||
seq2  GTTCACAGGAGCTCAGTGTTAGCCTGCCTAAGAGGAGA-AGAGA  792


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