BAC Information

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BAC

Clone NameB6Ng01-005M02
Chromosome17 (Build37)
Map Location 65,831,311 - 65,959,835
singlet/doubletdoublet
Overlap geneE130009J12Rik, LOC674701, Vapa
Upstream geneLOC100043582, Man2a1, 4930583I09Rik, LOC100043871, LOC668655
Downstream geneTxndc2, Rab31, Ppp4r1, Ralbp1, LOC100043873, LOC100043592, Twsg1, Ankrd12, 5430411C19Rik, Ndufv2, ORF19, Ddx11, LOC100043599, LOC100043875, 1110012J17Rik, LOC100043876, Rab12, 9130404H23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-005M02.bB6Ng01-005M02.g
ACCDH842806DH842807
length1,1901,070
definitionDH842806|Mus musculus domesticus DNA, BAC clone: B6Ng01-005M02, 5' end.DH842807|Mus musculus domesticus DNA, BAC clone: B6Ng01-005M02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,831,311 - 65,832,511)(65,958,746 - 65,959,835)
sequence
gaattctctgaaagccaggaaggcactttgggactcagggcatgctattt
ccactgattagtttgtattcgctcaagagagagagagagagagagagaga
gagagagagagagagagagctagcttttaaattgtggtgtcatggctgag
agtccactgaacgttctggtctacagtatctgtctaggttttcaaaacat
ctcctgctgaaatggtaagttatttcagttccccgtgacacaatgttttc
accgatgttcaaaacagaagctactatgacccatacaccgtaagacacaa
aaagtcagcagatgtctcccacacatttatcatcgtgcaacgtacacagt
cacatgctggtcatttagagctgctacaagaacctgcgagaattgtttaa
cctgaagatgagaagctatcgaagtgcttcaaaatttagatgatggattt
actttgatgaagaggcaaaacatccaaaccgaggctgtgcttcgaaatca
ctttccctctgcagaaaactaggtcaaggcaggaagtggggtagctggag
cagcacagacagtagacttgtgggcctacgctgcacatttccatttgacc
tctttcattatgaacatgcacacgggtaatttctgtgtcacacctgtatc
tatagttaaattctgatctgttttcatattttcaaatataaatgtgtctc
cataatgggcagttcaaaaaatacaaaaaaaaatgtaaatcattataatc
agggctggagagatgactcagcggttaagagcactgactgctctttcaga
ggtcctgagttcaattcccagcaaccacatggtggctcacaaccatctgt
aatgggatcagacaccctcttctggtgtgtctgaagacagcaaagtgtac
tcatatacataaaattaaataaaatttttaaaatatcataacaatctcac
cacacggagacaagtcttggcattgttaagtctttcattctactcgggat
ttcagtctctgcttggcagttatctgagtttcctaacattctgcgttttc
tctacatgttcaaaagcttcagactaaattaagttatctccgaaactcct
atgatgatagaatctgggaatacttctcttggtgattcagctgttaaaat
gccatattttgtctcattcagttgcctgttgtaagacaga
gaattccaagtgtgtgtttcctcataaaggtcctggaaaagaggaaaatg
ggctgaactccttgtgttgaggtagctcttgtgagtactgaggaacacag
ggagctagctgtgctgccactgtcagccagaagccacaccccttctaagg
tctgagaatggtctcctcttccatcccaggctgcctttggattccagtac
acctatgaggatcttgaattctttttaaatataatttttaaaaaaatatt
tattttttatttgtgtaagtcttttcttgtatatacatgtgaacactact
tgggtcctgagtgcttgtggaggccagaagagggtggcaggccctttgga
attggagtgacaagtggccattagttactatgtgggttcttggaattgaa
cctgcatcctcaagaagtattctcaaccactgagccatctcttcaaccac
ttttaaaattttttaaaaatattttttgacaattgtatgtgtgtgttgcg
tgcacacagacacattaacctgatcatctttgtgttctccatctgaccct
ctgcctcatgtttccctcctacctttgtgtcttcactaaaaaattaatat
tttatttatttatatatgtgcgtcttcatgtggacgtgagtgcagatgcc
cttggaggctggaggtgtaggattccctgaagctggagttacagatggtt
gtggtgagccacctgatgcggatgctgggagctgaactcaggtcctctga
aaagagcagcagttaaccgctcagccatctcctcaggctccccgtgcctt
aaaaaatcctctcctgaatccagttagtgctagcctcctgtgtgttggta
tgggagcatgagcagctcactggtgccacctcccttaccctaaagactga
ctctccttctcagtaacggtcagctgagatgatcatgtgcagccctgtgt
agatacacagctgctgtgatttagagtgcagtgcatgtcacgtcccagag
acgcatacatctctctcatgcactctttctgtctctgctctagatctttc
actcctctggacattctcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_65831311_65832511
seq2: B6Ng01-005M02.b_45_1234

seq1  GAATTCTCTGAAAGCCAGGAAGGCACTTTGGGACTCAGGGCATGCTATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGAAAGCCAGGAAGGCACTTTGGGACTCAGGGCATGCTATTT  50

seq1  CCACTGATTAGTTTGTATTCGCTCAAGAGAGAGAGAGAGAGAGAGAGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGATTAGTTTGTATTCGCTCAAGAGAGAGAGAGAGAGAGAGAGAGA  100

seq1  GAGAGAGAGAGAGAGAGAGCTAGCTTTTAAATTGTGGTGTCATGGCTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGAGCTAGCTTTTAAATTGTGGTGTCATGGCTGAG  150

seq1  AGTCCACTGAACGTTCTGGTCTACAGTATCTGTCTAGGTTTTCAAAACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCACTGAACGTTCTGGTCTACAGTATCTGTCTAGGTTTTCAAAACAT  200

seq1  CTCCTGCTGAAATGGTAAGTTATTTCAGTTCCCCGTGACACAATGTTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCTGAAATGGTAAGTTATTTCAGTTCCCCGTGACACAATGTTTTC  250

seq1  ACCGATGTTCAAAACAGAAGCTACTATGACCCATACACCGTAAGACACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGATGTTCAAAACAGAAGCTACTATGACCCATACACCGTAAGACACAA  300

seq1  AAAGTCAGCAGATGTCTCCCACACATTTATCATCGTGCAACGTACACAGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCAGCAGATGTCTCCCACACATTTATCATCGTGCAACGTACACAGT  350

seq1  CACATGCTGGTCATTTAGAGCTGCTACAAGAACCTGCGAGAATTGTTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGCTGGTCATTTAGAGCTGCTACAAGAACCTGCGAGAATTGTTTAA  400

seq1  CCTGAAGATGAGAAGCTATCGAAGTGCTTCAAAATTTAGATGATGGATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAGATGAGAAGCTATCGAAGTGCTTCAAAATTTAGATGATGGATTT  450

seq1  ACTTTGATGAAGAGGCAAAACATCCAAACCGAGGCTGTGCTTCGAAATCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGATGAAGAGGCAAAACATCCAAACCGAGGCTGTGCTTCGAAATCA  500

seq1  CTTTCCCTCTGCAGAAAACTAGGTCAAGGCAGGAAGTGGGGTAGCTGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCCTCTGCAGAAAACTAGGTCAAGGCAGGAAGTGGGGTAGCTGGAG  550

seq1  CAGCACAGACAGTAGACTTGTGGGCCTACGCTGCACATTTCCATTTGACC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACAGACAGTAGACTTGTGGGCCTACGCTGCACATTTCCATTTGACC  600

seq1  TCTTTCATTATGAACATGCACACGGGTAATTTCTGTGTCACACCTGTATC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCATTATGAACATGCACACGGGTAATTTCTGTGTCACACCTGTATC  650

seq1  TATAGTTAAATTCTGATCTGTTTTCATATTTTCAAATATAAATGTGTCTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTAAATTCTGATCTGTTTTCATATTTTCAAATATAAATGTGTCTC  700

seq1  CATAATGGGCAGTTCAAAAAATACAAAAAAAAATGTAAATCATTATAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATGGGCAGTTCAAAAAATACAAAAAAAAATGTAAATCATTATAATC  750

seq1  AGGGCTGGAGAGATGACTCAGCGGTTAAGAGCACTGACTGCTCTTTCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTGGAGAGATGACTCAGCGGTTAAGAGCACTGACTGCTCTTTCAGA  800

seq1  GGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGT  850

seq1  AATGGGATCAGACACCCTCTTCTGGTGTGTCTGAAGACAGCAACAGTGTA  900
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AATGGGATCAGACACCCTCTTCTGGTGTGTCTGAAGACAGCAA-AGTGTA  899

seq1  CTCATATACATAAAA-TAAATAAAATTTTTAAAATATCATAACAATCTCA  949
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTCATATACATAAAATTAAATAAAATTTTTAAAATATCATAACAATCTCA  949

seq1  CCACACGGAGACAAGTCTTGGCA-TGTTAAGTCTTTCATTCTACTCGGGA  998
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CCACACGGAGACAAGTCTTGGCATTGTTAAGTCTTTCATTCTACTCGGGA  999

seq1  TTTCAGGTCTCTGCTTGGGCAGTTTATCTGAGGTTTCCTAACATTCTGCC  1048
      ||||| |||||||||| ||||| |||||||| |||||||||||||||| |
seq2  TTTCA-GTCTCTGCTT-GGCAG-TTATCTGA-GTTTCCTAACATTCTG-C  1044

seq1  GTTTTCTCCTAACATGTTCAAAAAGCTCCAAGACTAAATATAGTTATCTC  1098
      ||||||||   |||||||| ||||||| | |||||||||  |||||||| 
seq2  GTTTTCTC--TACATGTTC-AAAAGCTTC-AGACTAAATTAAGTTATCT-  1089

seq1  CCGAAAACTTCCTAATGGTGGATAG-ATCTGGGAATAC-TCTCTT-GTGA  1145
      ||||||   |||| ||| | ||||| |||||||||||| |||||| ||||
seq2  CCGAAA--CTCCT-ATGAT-GATAGAATCTGGGAATACTTCTCTTGGTGA  1135

seq1  TCAAAGCTG-TAAAATG-CATATTTTG-CTCAATCAGTTTTGCTTGTTGT  1192
      |   ||||| ||||||| ||||||||| |||| ||||  |||| ||||||
seq2  T-TCAGCTGTTAAAATGCCATATTTTGTCTCATTCAG--TTGCCTGTTGT  1182

seq1  AGAGACAGA  1201
      | |||||||
seq2  A-AGACAGA  1190

seq1: chr17_65958746_65959835
seq2: B6Ng01-005M02.g_67_1136 (reverse)

seq1  TAGAGAATGTCAAAGAGAAGGTGAAAAGAATCTAAGAGCAGGAGGACAGA  50
      |||||||||||  |||| | ||||||   |||| |||||||   ||||| 
seq2  TAGAGAATGTC-CAGAGGA-GTGAAA--GATCT-AGAGCAG--AGACAG-  42

seq1  AAAGAGTGCAATGAGAGAGATGTTATGCTGTCTTCTGGGGACGTGACATG  100
      ||||||||| |||||||||||| ||||| ||| ||| |||||||||||||
seq2  AAAGAGTGC-ATGAGAGAGATG-TATGC-GTC-TCT-GGGACGTGACATG  87

seq1  GCCACTGCACTTCTAAATTCACAGCAGCTGTGGTATCTACACAGGGCTGC  150
        |||||||| |||||| ||||||||||||| ||||||||||||||||||
seq2  --CACTGCAC-TCTAAA-TCACAGCAGCTGT-GTATCTACACAGGGCTGC  132

seq1  ACATGATCATCTCAGCTGACCGTTACTGAGAAAGGAGAGTCAGTCTTTAG  200
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACATGATCATCTCAGCTGACCGTTACTGAG-AAGGAGAGTCAGTCTTTAG  181

seq1  GGTAAGGGAGGTGGCACCAGTGAGCTGCTCATGCTCCCATACCAACACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGGGAGGTGGCACCAGTGAGCTGCTCATGCTCCCATACCAACACAC  231

seq1  AGGAGGCTAGCACTAACTGGATTCAGGAGAGGATTTTTTAAGGCACGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGCTAGCACTAACTGGATTCAGGAGAGGATTTTTTAAGGCACGGGG  281

seq1  AGCCTGAGGAGATGGCTGAGCGGTTAACCTGCTGCTCTTTTCAGAGGACC  350
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AGCCTGAGGAGATGGCTGAGCGGTTAA-CTGCTGCTCTTTTCAGAGGACC  330

seq1  TGAGTTCAGCTCCCAGCATCCGCATCAGGTGGCTCACCACAACCATCTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCAGCTCCCAGCATCCGCATCAGGTGGCTCACCACAACCATCTGT  380

seq1  AACTCCAGCTTCAGGGAATCCTACACCTCCAGCCTCCAAGGGCATCTGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCAGCTTCAGGGAATCCTACACCTCCAGCCTCCAAGGGCATCTGCA  430

seq1  CTCACGTCCACATGAAGACGCACATATATAAATAAATAAAATATTAATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACGTCCACATGAAGACGCACATATATAAATAAATAAAATATTAATTT  480

seq1  TTTAGTGAAGACACAAAGGTAGGAGGGAAACATGAGGCAGAGGGTCAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGAAGACACAAAGGTAGGAGGGAAACATGAGGCAGAGGGTCAGAT  530

seq1  GGAGAACACAAAGATGATCAGGTTAATGTGTCTGTGTGCACGCAACACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAACACAAAGATGATCAGGTTAATGTGTCTGTGTGCACGCAACACAC  580

seq1  ACATACAATTGTCAAAAAATATTTTTAAAAAATTTTAAAAGTGGTTGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACAATTGTCAAAAAATATTTTTAAAAAATTTTAAAAGTGGTTGAAG  630

seq1  AGATGGCTCAGTGGTTGAGAATACTTCTTGAGGATGCAGGTTCAATTCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCTCAGTGGTTGAGAATACTTCTTGAGGATGCAGGTTCAATTCCA  680

seq1  AGAACCCACATAGTAACTAATGGCCACTTGTCACTCCAATTCCAAAGGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCCACATAGTAACTAATGGCCACTTGTCACTCCAATTCCAAAGGGC  730

seq1  CTGCCACCCTCTTCTGGCCTCCACAAGCACTCAGGACCCAAGTAGTGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCACCCTCTTCTGGCCTCCACAAGCACTCAGGACCCAAGTAGTGTTC  780

seq1  ACATGTATATACAAGAAAAGACTTACACAAATAAAAAATAAATATTTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTATATACAAGAAAAGACTTACACAAATAAAAAATAAATATTTTTT  830

seq1  TAAAAATTATATTTAAAAAGAATTCAAGATCCTCATAGGTGTACTGGAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATTATATTTAAAAAGAATTCAAGATCCTCATAGGTGTACTGGAAT  880

seq1  CCAAAGGCAGCCTGGGATGGAAGAGGAGACCATTCTCAGACCTTAGAAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGCAGCCTGGGATGGAAGAGGAGACCATTCTCAGACCTTAGAAGG  930

seq1  GGTGTGGCTTCTGGCTGACAGTGGCAGCACAGCTAGCTCCCTGTGTTCCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGGCTTCTGGCTGACAGTGGCAGCACAGCTAGCTCCCTGTGTTCCT  980

seq1  CAGTACTCACAAGAGCTACCTCAACACAAGGAGTTCAGCCCATTTTCCTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACTCACAAGAGCTACCTCAACACAAGGAGTTCAGCCCATTTTCCTC  1030

seq1  TTTTCCAGGACCTTTATGAGGAAACACACACTTGGAATTC  1090
      ||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCAGGACCTTTATGAGGAAACACACACTTGGAATTC  1070