BAC Information

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BAC

Clone NameB6Ng01-006I11
Chromosome6 (Build37)17 (Build37)
Map Location 66,375,386 - 66,376,42045,054,651 - 45,055,201
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneC130060K24Rik, 9030611K07Rik, A930038C07Rik, LOC667160, Prdm5, 4930544G11Rik, Ppia-ps6_651.1, LOC100041916
Downstream geneTpm3-rs3, LOC627751, Mad2l1, V1rc15, LOC100041941, Aurkb-ps, V1rc14, LOC546901, V1rc12, LOC627833, V1rc11, V1rc10, LOC100042816, LOC546902, V1rc13, EG546903, LOC100042008, 4930597O21Rik, Gng12, LOC100042837, Gadd45a, E230016M11Rik, EG667310, LOC667318, Serbp1, Il12rb2, LOC667324, EG667326, LOC672137, EG209589, LOC100042890, Il23r
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006I11.bB6Ng01-006I11.g
ACCDH843362DH843363
length1,029962
definitionDH843362|Mus musculus domesticus DNA, BAC clone: B6Ng01-006I11, 5' end.DH843363|Mus musculus domesticus DNA, BAC clone: B6Ng01-006I11, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(66,375,386 - 66,376,420)(45,054,651 - 45,055,201)
sequence
gaattccctttcatgtgtaatgttaccatggctttaatagaatttaacta
tgcaatcacttcactaatgaaagacattaccaccccccatactagcatta
acacagacagtctacttagcctgaaataggttctcagtaaatagttccta
agtgaataaacaacaatcaagatactgtagaacccaggaggcaaacccaa
gcagaccagtgagctctgcccttccaatcttacctctccattggcttcta
cagaggtcatgcagcctcctccagtcctggcctgcagctgtattcacaag
gtaaccagtggtgattatgaagtggattattcatatccacttgtctcgga
tttagttccaacaggtattggttttggtttcctttttaactcagttatag
atccattcttttgtgataaccaataacaaaagaaaatgactctaaatttt
ctgaactactcaattctgtgagctccactgctattccacattgtaccatc
tgtctccaagggaaacctttttccttttgtataagaagctaacagagaga
agagttcaaatcaaatgatggtcacataaagtgaattaataatgcttaat
ttttatctttaaaatgaataatttggtttctaaattagaaatgaaaatca
agtttccttaaataaactataagaattctttttagtttatcaggctagca
ataccttacactttatgagatttagtaaaaagcaagaaagagttaaggct
ttagatttgaaattttctcactgaagagttttgttttgtgggattttttt
ataatgaagattttggatggctggatatttctaagtaatacaaatgcgaa
aaatagatctaaagatgggaggaaatccttttattagggaagctttgaaa
ggacttttgtttgtttctgtttattgtcatcattctctaaagaagaaatg
aatggataatgtctataaataaacttattcagaaagtctcatttagcttc
ttaccaagttgaatagtattttattttaa
gaattcctgatctttccaagacttttatcatgaatgggtgttggattttt
tcaaatgctttttcagcatctaacgagatgatcatgtggtttttgtcttt
gagtttgtttataaaatggattacgtttatggattttcttatattaaacc
atccctgcatccttggaataaaacctacttggtcaggatggatgattgtt
ttaatgtgttcttggattcgtttagcaagaaatttattgattatttttgc
atcgatattcataagggaaattggtctgaagttttctatctttgttggat
ctttctgtggtttaggtaacagagtaattgtggcttcatagaatgagttg
ggtagagtaccttctccttctattttgtggaataggttgtgcagaactgg
aattagatcttctttgaactctgcactaaacccatctggtcctgggctat
ttttggttgggagactattaatgagtgcttctatttctgtaggggataat
ggactgtttagatccttaactttatcctcatttaactttggtacctggta
tctgtctagaaatttgtccatttcgtctaggttttccagttttgttgagt
atagccttttttagaaggatctgatgttgttttggatatcttcaggatct
gttatgtttcctttttcatttctgattttgttaattaggaagctgtccct
gtgtcctccagtgagtctggctaagggtttacctatcttgttgattttct
caaagaaccagctcctcatttgggttgattctttgaatagttcttcttgt
ttccccttggttatttcacccctgagttgattattcctgccaccactcct
cttgggtgaatttgctttttttcagagctttagatgtgtgtcaagctgct
agtgtgtgctctctctagtttctttttggaggcactcgagctatgagttt
ccctccttagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_66375386_66376420
seq2: B6Ng01-006I11.b_38_1066

seq1  GAATTCCCTTTCATGTGTAATGTTACCATGGCTTTAATAGAATTTAACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTTCATGTGTAATGTTACCATGGCTTTAATAGAATTTAACTA  50

seq1  TGCAATCACTTCACTAATGAAAGACATTACCACCCCCCATACTAGCATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATCACTTCACTAATGAAAGACATTACCACCCCCCATACTAGCATTA  100

seq1  ACACAGACAGTCTACTTAGCCTGAAATAGGTTCTCAGTAAATAGTTCCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGACAGTCTACTTAGCCTGAAATAGGTTCTCAGTAAATAGTTCCTA  150

seq1  AGTGAATAAACAACAATCAAGATACTGTAGAACCCAGGAGGCAAACCCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAATAAACAACAATCAAGATACTGTAGAACCCAGGAGGCAAACCCAA  200

seq1  GCAGACCAGTGAGCTCTGCCCTTCCAATCTTACCTCTCCATTGGCTTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACCAGTGAGCTCTGCCCTTCCAATCTTACCTCTCCATTGGCTTCTA  250

seq1  CAGAGGTCATGCAGCCTCCTCCAGTCCTGGCCTGCAGCTGTATTCACAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGTCATGCAGCCTCCTCCAGTCCTGGCCTGCAGCTGTATTCACAAG  300

seq1  GTAACCAGTGGTGATTATGAAGTGGATTATTCATATCCACTTGTCTCGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACCAGTGGTGATTATGAAGTGGATTATTCATATCCACTTGTCTCGGA  350

seq1  TTTAGTTCCAACAGGTATTGGTTTTGGTTTCCTTTTTAACTCAGTTATAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTTCCAACAGGTATTGGTTTTGGTTTCCTTTTTAACTCAGTTATAG  400

seq1  ATCCATTCTTTTGTGATAACCAATAACAAAAGAAAATGACTCTAAATTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTCTTTTGTGATAACCAATAACAAAAGAAAATGACTCTAAATTTT  450

seq1  CTGAACTACTCAATTCTGTGAGCTCCACTGCTATTCCACATTGTACCATC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTACTCAATTCTGTGAGCTCCACTGCTATTCCACATTGTACCATC  500

seq1  TGTCTCCAAGGGAAACCTTTTTCCTTTTGTATAAGAAGCTAACAGAGAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCCAAGGGAAACCTTTTTCCTTTTGTATAAGAAGCTAACAGAGAGA  550

seq1  AGAGTTCAAATCAAATGATGGTCACATAAAGTGAATTAATAATGCTTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTCAAATCAAATGATGGTCACATAAAGTGAATTAATAATGCTTAAT  600

seq1  TTTTATCTTTAAAATGAATAATTTGGTTTCTAAATTAGAAATGAAAATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCTTTAAAATGAATAATTTGGTTTCTAAATTAGAAATGAAAATCA  650

seq1  AGTTTCCTTAAATAAACTATAAGAATTCTTTTTAGTTTATCAGGCTAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCTTAAATAAACTATAAGAATTCTTTTTAGTTTATCAGGCTAGCA  700

seq1  ATACCTTACACTTTATGAGATTTAGTAAAAAGCAAGAAAGAGTTAAGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCTTACACTTTATGAGATTTAGTAAAAAGCAAGAAAGAGTTAAGGCT  750

seq1  TTAGATTTGAAATTTTCTCACTGAAGAGTTTTGTTTTGTGGGATTTTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATTTGAAATTTTCTCACTGAAGAGTTTTGTTTTGTGGGATTTTTTT  800

seq1  ATAATGAAGATTTTGGATGGCTGGATATTTCTAAGTAATACAAATGCGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGAAGATTTTGGATGGCTGGATATTTCTAAGTAATACAAATGCGAA  850

seq1  AAATAGATCTAAAGATGGGAGGAAATCCTTTTATTAGGGAAGCTTTGAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGATCTAAAGATGGGAGGAAATCCTTTTATTAGGGAAGCTTTGAAA  900

seq1  GGACTTTTGTTTGGTTTCTGTTTATTGTCATCATTCTCTAAAGAAGAAAT  950
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GGACTTTTGTTT-GTTTCTGTTTATTGTCATCATTCTCTAAAGAAGAAAT  949

seq1  GAATGGATAATGTCTATAAATAAACTTATTCAAGAAAGTCTCCATTTAGC  1000
      ||||||||||||||||||||||||||||||| ||||||||| ||||||||
seq2  GAATGGATAATGTCTATAAATAAACTTATTC-AGAAAGTCT-CATTTAGC  997

seq1  TTCCTACCAAGTTTGAATTAGTAATTTAATTTTAA  1035
      ||| ||||||| ||||| |||| |||| |||||||
seq2  TTCTTACCAAG-TTGAA-TAGT-ATTTTATTTTAA  1029

seq1: chr17_45054651_45055201
seq2: B6Ng01-006I11.g_488_1029 (reverse)

seq1  TTCTAA-GAGGGAAACTCATAGCTCTGATTGCCTCCAAAAAGAAACTAGA  49
      |||||| |||||||||||||||||| || |||||||||||||||||||||
seq2  TTCTAAGGAGGGAAACTCATAGCTC-GAGTGCCTCCAAAAAGAAACTAGA  49

seq1  GAGAGCACACACTAGCAGCTTGACAACACACCTAAAAGCTCTAGAAAAGA  99
      |||||||||||||||||||||||| ||||| || ||||||||  ||||  
seq2  GAGAGCACACACTAGCAGCTTGAC-ACACATCT-AAAGCTCTGAAAAA--  95

seq1  AGGAAGCAAATTCACCCAAGAGGAGTAGACAGCAGGAAATAATCAAACTC  149
         ||||||||||||||||||||||| |   ||||| ||||||| |||||
seq2  ---AAGCAAATTCACCCAAGAGGAGT-GGTGGCAGG-AATAATC-AACTC  139

seq1  AGGGGCGAAATCAACCAAGTGGAAAGAAGAAGAACTATTTAAAGAATCAA  199
      ||||| ||||| ||||||| ||||| ||||||||||||| ||||||||||
seq2  AGGGGTGAAAT-AACCAAGGGGAAACAAGAAGAACTATTCAAAGAATCAA  188

seq1  CC-----AAGGAGCTGGTTCTTTGAGAAAATCAACAAGATAGATAAACCC  244
      ||      |||||||||||||||||||||||||||||||||| |||||||
seq2  CCCAAATGAGGAGCTGGTTCTTTGAGAAAATCAACAAGATAGGTAAACCC  238

seq1  TTAGCCAGACTCACTAGAGGGCACAGGGAAAGCATCATAATTAACAAAAT  294
      ||||||||||||||| |||| |||||||| ||| || |||||||||||||
seq2  TTAGCCAGACTCACTGGAGGACACAGGGACAGCTTCCTAATTAACAAAAT  288

seq1  CAGAAATGAAAAGGAAGACATAACAACATATCTTGAAGAAATCCAAAACA  344
      |||||||||||| | | ||||   |||| ||| |||||| ||||||||||
seq2  CAGAAATGAAAAAGGAAACAT---AACAGATCCTGAAGATATCCAAAACA  335

seq1  CCATCAGATCCTTCTACAAAAGGCTATACTCAACAAAACTGGAAAACATG  394
       ||||||||||||||| |||||||||||||||||||||||||||||| | 
seq2  ACATCAGATCCTTCTAAAAAAGGCTATACTCAACAAAACTGGAAAACCTA  385

seq1  GATGAAATGGACAAATTTCTAGACAGATACCAGGTACCAAAGTTATATCA  444
      || |||||||||||||||||||||||||||||||||||||||||| || |
seq2  GACGAAATGGACAAATTTCTAGACAGATACCAGGTACCAAAGTTAAATGA  435

seq1  GGATCAAGTTAATGATCTAAACAGTCCCATTTCCCCTAAAGAAATAGAAG  494
      |||| ||||||| ||||||||||||||  | ||||||| |||||||||||
seq2  GGATAAAGTTAAGGATCTAAACAGTCCATTATCCCCTACAGAAATAGAAG  485

seq1  AAGTCATTAATAATCTCCCAACCAAAAAAAGCCCAGGAACAGATGGGTTT  544
       | ||||||||| ||||||||||||||| ||||||||| |||||||||||
seq2  CACTCATTAATAGTCTCCCAACCAAAAATAGCCCAGGACCAGATGGGTTT  535

seq1  AGTGTAG  551
      |||| ||
seq2  AGTGCAG  542