BAC Information

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BAC

Clone NameB6Ng01-006N05
Chromosome17 (Build37)
Map Location 38,377,116 - 38,445,665
singlet/doubletdoublet
Overlap geneOlfr138, Olfr137
Upstream geneOlfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1, Olfr101, Olfr102, Olfr103, Olfr104, GA_x5J8B7W5KGR-1115818-1115257, Olfr105, Olfr758-ps1, Olfr106, Olfr107, Olfr759-ps1, Olfr108, Olfr760-ps1, Olfr109, H2-M2, Olfr110, Olfr111, Olfr112, Olfr113, Olfr114, Olfr115, Olfr116, Olfr117, Olfr118, Olfr119, Scocp, Olfr120, Olfr1558-ps1, Olfr121, Olfr122, Olfr123, Olfr124, Olfr125, LOC672822, Olfr126, Olfr127, Olfr128, Ppia-ps17_697.1, Olfr761, Olfr1552-ps1, LOC100043265, Olfr129, Olfr130, Olfr131, Olfr132, Olfr133, Olfr134, Olfr135
Downstream geneOlfr762-ps1, Olfr136, LOC626985, LOC100043297
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006N05.bB6Ng01-006N05.g
ACCDH843572DH843573
length1,049744
definitionDH843572|Mus musculus domesticus DNA, BAC clone: B6Ng01-006N05, 5' end.DH843573|Mus musculus domesticus DNA, BAC clone: B6Ng01-006N05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,377,116 - 38,378,083)(38,444,924 - 38,445,665)
sequence
gaattctttgtttagctctgagccccatttttaatggggttatttgattt
tctggagtccaccttcttgagttctttatatatattggacattagtcccc
tatctgatttaggatatgtaaagatagatcctttcccaatcttttggtgg
cctttttgtatcattgacagtgtcttttgctttgcagaagctttgcattt
catgaggtcccatttgtcaattctcgatcatacagtaaaagccattgctg
ttctattcaggaatttttcgcctgtgcccatatgttcaagggtttttcct
actttctcctctataagtttcagtgtctctggttttatgtggagttcctt
aatccacttagatttgaccttagtataaggagataggaatggatcaattc
ccattcttctatatgataacctgcagttgtgccagtaccattggttgaaa
atgctctcttttttccactggatggttttagctccctttccaaagatcaa
gtgaccataggtgtgtgggttcaactctgggtcttcaattctgttccatt
ggtctacttgtctgttgctataccagtaccatgcagtttttttttttttt
tgacaattagttttttatttatttatttatttttaattaggtattttcct
catttacattttcaatgctatctcaaaggtcccccatacccaccccccaa
tcccctcccacccactccccctttttggccctggcgttcccctgtactgg
ggcatataaagtttgcaagtccaatgggcctctccttgaagtgatggccg
actaggccatcttttgatacatatgcagctaaagacagagctcccgggta
ctggtagtttatattgttgttccaactctagggttgcagtccctttagct
ccttgggtaatttctctagcttctccattaggggcgggtgacccatccat
agctgactgggatcatccactctgtgttgctaggcctcggctaagtctca
caagagagagctaatactgggtcctttcagcgaatctgctagtgatgca
gaattcttatggtattcacaaaattagtgtcaccctttaaatttcttcat
agaaaattggagacatttaaaactgttaaatatccacataatgatatttc
tcttggattaaagtatttattattaaatgatgcatacattatagtaaagg
gaaatgatgaatagctgcgcagagtggtggttttgtgtatgtgtgaggta
ttggtacattcagtgatagttgaggatgataaaagtttatctatgaaatt
tgtgcactaaaaggaacggaaatagatataatataaattttagttaatat
tttaagaaaaaagaaaaggaattattgatatgtaatacattggttgtaat
taaaatatattataatagcagtaacaggtaacgtgtagtgaacttatttt
tacacacatgaaaatttacacataaaactttatccaaagaataattcaat
ttaaatggagcaaaaataatttcattttgataaaatattggatgtccttt
catacactgaaacaagattatcttttaaaatatcaatgaggaaaaataat
ccagtgtctggagagagatagatcagccatgactgctcttccagaggtcc
tgagttcaattcccagcaaccacatggtggcacacaaaccatctgtaatg
ggatcaggtgccctcttctggtgtgtctgaagagagtgatagtgtactca
tattaaataaatagatagataggtagggtaggtaggtagattgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_38377116_38378083
seq2: B6Ng01-006N05.b_138_1094

seq1  TAGTCCCCTATCTGATTTAGGATATGTAAAGATAGATCCTTTCCCAATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCCCTATCTGATTTAGGATATGTAAAGATAGATCCTTTCCCAATCT  50

seq1  TTTGGTGGCCTTTTTGTATCATTGACAGTGTCTTTTGCTTTGCAGAAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGGCCTTTTTGTATCATTGACAGTGTCTTTTGCTTTGCAGAAGCT  100

seq1  TTGCATTTCATGAGGTCCCATTTGTCAATTCTCGATCATACAGTAAAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATTTCATGAGGTCCCATTTGTCAATTCTCGATCATACAGTAAAAGC  150

seq1  CATTGCTGTTCTATTCAGGAATTTTTCGCCTGTGCCCATATGTTCAAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCTGTTCTATTCAGGAATTTTTCGCCTGTGCCCATATGTTCAAGGG  200

seq1  TTTTTCCTACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTACTTTCTCCTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGG  250

seq1  AGTTCCTTAATCCACTTAGATTTGACCTTAGTATAAGGAGATAGGAATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCCTTAATCCACTTAGATTTGACCTTAGTATAAGGAGATAGGAATGG  300

seq1  ATCAATTCCCATTCTTCTATATGATAACCTGCAGTTGTGCCAGTACCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTCCCATTCTTCTATATGATAACCTGCAGTTGTGCCAGTACCATT  350

seq1  GGTTGAAAATGCTCTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGAAAATGCTCTCTTTTTTCCACTGGATGGTTTTAGCTCCCTTTCCA  400

seq1  AAGATCAAGTGACCATAGGTGTGTGGGTTCAACTCTGGGTCTTCAATTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCAAGTGACCATAGGTGTGTGGGTTCAACTCTGGGTCTTCAATTCT  450

seq1  GTTCCATTGGTCTACTTGTCTGTTGCTATACCAGTACCATGCAGTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCATTGGTCTACTTGTCTGTTGCTATACCAGTACCATGCAGTTTTTT  500

seq1  TTTTTTTTTGACAATTAGTTTTTTATTTATTTATTTATTTTTAATTAGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTGACAATTAGTTTTTTATTTATTTATTTATTTTTAATTAGGT  550

seq1  ATTTTCCTCATTTACATTTTCAATGCTATCTCAAAGGTCCCCCATACCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCTCATTTACATTTTCAATGCTATCTCAAAGGTCCCCCATACCCA  600

seq1  CCCCCCAATCCCCTCCCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCCC  650
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCCCCCAATCCCCT-CCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCCC  649

seq1  CTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCCTTGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACTGGGGCATATAAAGTTTGCAAGTCCAATGGGCCTCTCCTTGAAG  699

seq1  TGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAAAGACAAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAAAGAC-AGAG  748

seq1  CTCCCGGGTACTGGTTAGTTTATATTGTTGTTCCACCTCTAGGGTTGCAG  800
      |||||||||||||| |||||||||||||||||||| ||||||||||||||
seq2  CTCCCGGGTACTGG-TAGTTTATATTGTTGTTCCAACTCTAGGGTTGCAG  797

seq1  TTCCCTTTAGCTCCTTGGGTAATTTCTCTAGCTCCTCCATTAGGGGCCGT  850
       |||||||||||||||||||||||||||||||| |||||||||||| || 
seq2  -TCCCTTTAGCTCCTTGGGTAATTTCTCTAGCTTCTCCATTAGGGG-CGG  845

seq1  GTGACCCATCCAATAGCTGACTGTGATCATCCACTTCTGTGTTTGCTAGG  900
      ||||||||||| ||||||||||| |||||||||| |||||| ||||||||
seq2  GTGACCCATCC-ATAGCTGACTGGGATCATCCAC-TCTGTG-TTGCTAGG  892

seq1  CCCCGGCATAGTCTCACAAGAGAGAGCTATAACTGGGCCCTTTCAGCGAA  950
      || ||||  ||||||||||||||||||||  |||||| |||||||||| |
seq2  CCTCGGCTAAGTCTCACAAGAGAGAGCTAATACTGGGTCCTTTCAGCG-A  941

seq1  ATCTTGCTAGTGTATGCA  968
      ||| |||||||| |||||
seq2  ATC-TGCTAGTG-ATGCA  957

seq1: chr17_38444924_38445665
seq2: B6Ng01-006N05.g_67_810 (reverse)

seq1  CCTATCTACCTACCTA-CCTACCTATCTATCTATTTATTTAATATGAGTA  49
      || ||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCAATCTACCTACCTACCCTACCTATCTATCTATTTATTTAATATGAGTA  50

seq1  CACTATCACTCTCTTCAGACACACCAGAAGAGGGCACCTGATCCCATTAC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTATCACTCTCTTCAGACACACCAGAAGAGGGCACCTGATCCCATTAC  100

seq1  AGATGG-TTGTGTGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCT  148
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTTTGTGTGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCT  150

seq1  CTGGAAGAGCAGTCATGGCTGATCTATCTCTCTCCAGACACTGGATTATT  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGAGCAGTCATGGCTGATCTATCTCTCTCCAGACACTGGATTATT  200

seq1  TTTCCTCATTGATATTTTAAAAGATAATCTTGTTTCAGTGTATGAAAGGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTCATTGATATTTTAAAAGATAATCTTGTTTCAGTGTATGAAAGGA  250

seq1  CATCCAATATTTTATCAAAATGAAATTATTTTTGCTCCATTTAAATTGAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCAATATTTTATCAAAATGAAATTATTTTTGCTCCATTTAAATTGAA  300

seq1  TTATTCTTTGGATAAAGTTTTATGTGTAAATTTTCATGTGTGTAAAAATA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTTTGGATAAAGTTTTATGTGTAAATTTTCATGTGTGTAAAAATA  350

seq1  AGTTCACTACACGTTACCTGTTACTGCTATTATAATATATTTTAATTACA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCACTACACGTTACCTGTTACTGCTATTATAATATATTTTAATTACA  400

seq1  ACCAATGTATTACATATCAATAATTCCTTTTCTTTTTTCTTAAAATATTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATGTATTACATATCAATAATTCCTTTTCTTTTTTCTTAAAATATTA  450

seq1  ACTAAAATTTATATTATATCTATTTCCGTTCCTTTTAGTGCACAAATTTC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAATTTATATTATATCTATTTCCGTTCCTTTTAGTGCACAAATTTC  500

seq1  ATAGATAAACTTTTATCATCCTCAACTATCACTGAATGTACCAATACCTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAAACTTTTATCATCCTCAACTATCACTGAATGTACCAATACCTC  550

seq1  ACACATACACAAAACCACCACTCTGCGCAGCTATTCATCATTTCCCTTTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATACACAAAACCACCACTCTGCGCAGCTATTCATCATTTCCCTTTA  600

seq1  CTATAATGTATGCATCATTTAATAATAAATACTTTAATCCAAGAGAAATA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAATGTATGCATCATTTAATAATAAATACTTTAATCCAAGAGAAATA  650

seq1  TCATTATGTGGATATTTAACAGTTTTAAATGTCTCCAATTTTCTATGAAG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATGTGGATATTTAACAGTTTTAAATGTCTCCAATTTTCTATGAAG  700

seq1  AAATTTAAAGGGTGACACTAATTTTGTGAATACCATAAGAATTC  742
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAAAGGGTGACACTAATTTTGTGAATACCATAAGAATTC  744