BAC Information

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BAC

Clone NameB6Ng01-006O20
Chromosome17 (Build37)
Map Location 67,059,066 - 67,145,399
singlet/doubletdoublet
Overlap genePtprm
Upstream geneRab31, Ppp4r1, Ralbp1, LOC100043873, LOC100043592, Twsg1, Ankrd12, 5430411C19Rik, Ndufv2, ORF19, Ddx11, LOC100043599, LOC100043875, 1110012J17Rik, LOC100043876, Rab12, 9130404H23Rik
Downstream geneLrrc30, Lama1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006O20.bB6Ng01-006O20.g
ACCDH843650DH843651
length1,148703
definitionDH843650|Mus musculus domesticus DNA, BAC clone: B6Ng01-006O20, 5' end.DH843651|Mus musculus domesticus DNA, BAC clone: B6Ng01-006O20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,144,242 - 67,145,399)(67,059,066 - 67,059,767)
sequence
gaattcatttatttcacactttaaattgtataaattcagtgtcagataca
cggctaatcagatcataataaggttagatgaaagttcatagtgtctctag
cctgtcactcatagagaggacagggggcatgctgagtctcccagcacagg
gcactttatgttcatgattgaaatatgtaaatatgtaatacacagaatcc
agccatgttattcattatcctatggatttttaaaattcctccctttcctt
catcccccactgttgtgaaaaaccttttatctatttacctcagggaaatt
atacaagagatactgaaaattataatgtattcagcattaattagaaatat
atagcatatgtttttatatatattatatttatatgctttaggtaattatg
catttgagtttccctgccaattttatggccaaaatattttacttggctga
ttactaagtatattttaagcttacttcttgaaacatgaagtgaatatact
ataaatccagttaacatgattaatttgcctaaagagatggcctgctttta
tttcttttttcctgttttaatgatgaaaaacagttgcaagaatccaaaat
aacttaatttgtttttaatgctttctaagcccaattttatagttattttc
ctttataagcaaaacataatttttgaaacatatttagtacacagcagaaa
aggacagttaaaaatcacagcttctagcaagcctctaatataattataca
tttggatcttaacacagtttcaaatcttattttcccactcattttaaaag
tttcctatatctttgtcatgaacagcactatgagtaatttccttagacta
actggcattaatttctggcagtattttctaaaggcagagtagagtacaaa
attcttcagtttaagttatctcaacaagttactttcatgaaagcgtaaag
aaattcccatttctttcattattctggttaaatattccccatcattcatt
atcaccgaaaaatagcatcatcttttctttttttgatgaagtaccgcctc
tgatgactgaagaaatgtgtgtctcccctgaacaagcaccagtctttatg
ttgcatgggagttctgtcacaatcattgtacctggctacttcctgaag
gaattcagaagacagggactgtggccttcacgcagagcagatagcagcag
tttgccattcctcaacatgtaaagaacacttctaaaactggcatcagggt
gtgtgtatgtgtgtgtgtgtgtgtgtgcacgcgcgcacaggtgcatgtct
gcatgtacatgtatgtgcatgtgtgtgtatgcatgaacatgtttacttgt
gtgcatgtatgcatgtctatgttcacttgtatgcatgtatatgtgtatgt
atgcatgtgtgtgtgcatatgcacatatttatgagggactttttattaag
ccttgggaagctgcaagttgtgagtgtgtcctcataagtgtaaacagatt
atttttgcacatgtttatttgaaagaatcatatcagagtaacgtttataa
aagttaggattagggcttagcaaacacagaagtggatgctaacagtcagc
tattggatggattacagggcccccaatggaggagctagagaaagtatcca
aggagctaaagagatctgcaactctataggtagaacaacattatgaacta
accagtaccccggagctcttgactctagctgcatatgtatcaaaagatgg
cctagtcggccattactggaaagagaggctccttggacttgcaaaacttt
atatgccccagtacagaggaactcaggccaaaaaagggggagtgggctgg
gta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_67144242_67145399
seq2: B6Ng01-006O20.b_47_1194 (reverse)

seq1  CTTCAGGAAAGGTAGCAGAGGTTACAAATGATTTGGTGAACAGGAACTCC  50
      |||||||||  |||||  ||| ||| |||||||  ||| ||| |||||||
seq2  CTTCAGGAA--GTAGC-CAGG-TAC-AATGATT--GTG-ACA-GAACTCC  41

seq1  CATTGCAAACATAAAGACTTGGTGCTTGTTCAGGCGGAGACACACATT--  98
      || ||| ||||||||||| ||||||||||||||| |||||||||||||  
seq2  CA-TGC-AACATAAAGAC-TGGTGCTTGTTCAGG-GGAGACACACATTTC  87

seq1  CTCAGTCCATCA-AAGCGG-ACATCATCAAAAAA--GAAAGATGAATGCT  144
       ||||| ||||| | |||| || |||||||||||   ||||||| |||||
seq2  TTCAGT-CATCAGAGGCGGTACTTCATCAAAAAAAGAAAAGATG-ATGCT  135

seq1  AATTTTCGGTGATAATGAATGATGGGGAAAATTTAAACAGAATAATGAAA  194
      | ||||||||||||||||||||||||||| |||||| |||||||||||||
seq2  ATTTTTCGGTGATAATGAATGATGGGGAATATTTAACCAGAATAATGAAA  185

seq1  GAAATGGGAATTTCTTTACGCTTTCATGAAAGTAACTTGTTGAGATAACT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGGGAATTTCTTTACGCTTTCATGAAAGTAACTTGTTGAGATAACT  235

seq1  TAAACCTGAAGAATTTTGTACTCTACTCTGCCTTTAGAAAATACTGCCAG  294
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAA-CTGAAGAATTTTGTACTCTACTCTGCCTTTAGAAAATACTGCCAG  284

seq1  AAATTAATGCCAGTTAGTCTAAGGAAATTACTCATAGTGCTGTTCATGAC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAATGCCAGTTAGTCTAAGGAAATTACTCATAGTGCTGTTCATGAC  334

seq1  AAAGATATAGGAAACTTTTAAAATGAGTGGGAAAATAAGATTTGAAACTG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATATAGGAAACTTTTAAAATGAGTGGGAAAATAAGATTTGAAACTG  384

seq1  TGTTAAGATCCAAATGTATAATTATATTAGAGGCTTGCTAGAAGCTGTGA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAGATCCAAATGTATAATTATATTAGAGGCTTGCTAGAAGCTGTGA  434

seq1  TTTTTAACTGTCCTTTTCTGCTGTGTACTAAATATGTTTCAAAAATTATG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAACTGTCCTTTTCTGCTGTGTACTAAATATGTTTCAAAAATTATG  484

seq1  TTTTGCTTATAAAGGAAAATAACTATAAAATTGGGCTTAGAAAGCATTAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTTATAAAGGAAAATAACTATAAAATTGGGCTTAGAAAGCATTAA  534

seq1  AAACAAATTAAGTTATTTTGGATTCTTGCAACTGTTTTTCATCATTAAAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAATTAAGTTATTTTGGATTCTTGCAACTGTTTTTCATCATTAAAA  584

seq1  CAGGAAAAAAGAAATAAAAGCAGGCCATCTCTTTAGGCAAATTAATCATG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAAAAAAGAAATAAAAGCAGGCCATCTCTTTAGGCAAATTAATCATG  634

seq1  TTAACTGGATTTATAGTATATTCACTTCATGTTTCAAGAAGTAAGCTTAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTGGATTTATAGTATATTCACTTCATGTTTCAAGAAGTAAGCTTAA  684

seq1  AATATACTTAGTAATCAGCCAAGTAAAATATTTTGGCCATAAAATTGGCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACTTAGTAATCAGCCAAGTAAAATATTTTGGCCATAAAATTGGCA  734

seq1  GGGAAACTCAAATGCATAATTACCTAAAGCATATAAATATAATATATATA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAACTCAAATGCATAATTACCTAAAGCATATAAATATAATATATATA  784

seq1  AAAACATATGCTATATATTTCTAATTAATGCTGAATACATTATAATTTTC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATATGCTATATATTTCTAATTAATGCTGAATACATTATAATTTTC  834

seq1  AGTATCTCTTGTATAATTTCCCTGAGGTAAATAGATAAAAGGTTTTTCAC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCTCTTGTATAATTTCCCTGAGGTAAATAGATAAAAGGTTTTTCAC  884

seq1  AACAGTGGGGGATGAAGGAAAGGGAGGAATTTTAAAAATCCATAGGATAA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGGGGGATGAAGGAAAGGGAGGAATTTTAAAAATCCATAGGATAA  934

seq1  TGAATAACATGGCTGGATTCTGTGTATTACATATTTACATATTTCAATCA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAACATGGCTGGATTCTGTGTATTACATATTTACATATTTCAATCA  984

seq1  TGAACATAAAGTGCCCTGTGCTGGGAGACTCAGCATGCCCCCTGTCCTCT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATAAAGTGCCCTGTGCTGGGAGACTCAGCATGCCCCCTGTCCTCT  1034

seq1  CTATGAGTGACAGGCTAGAGACACTATGAACTTTCATCTAACCTTATTAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAGTGACAGGCTAGAGACACTATGAACTTTCATCTAACCTTATTAT  1084

seq1  GATCTGATTAGCCGTGTATCTGACACTGAATTTATACAATTTAAAGTGTG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGATTAGCCGTGTATCTGACACTGAATTTATACAATTTAAAGTGTG  1134

seq1  AAATAAATGAATTC  1158
      ||||||||||||||
seq2  AAATAAATGAATTC  1148

seq1: chr17_67059066_67059767
seq2: B6Ng01-006O20.g_70_772

seq1  GAATTCAGAAGACAGGGACTGTGGCCTTCACGCAGAGCAGATAGCAGCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAGACAGGGACTGTGGCCTTCACGCAGAGCAGATAGCAGCAG  50

seq1  TTTGCCATTCCTCAACATGTAAAGAACACTTCTAAAACTGGCATCAGGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCATTCCTCAACATGTAAAGAACACTTCTAAAACTGGCATCAGGGT  100

seq1  GTGTGTATGTGTGTGTGTGTGTGTGTGCACGCGCGCACAGGTGCATGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTATGTGTGTGTGTGTGTGTGTGCACGCGCGCACAGGTGCATGTCT  150

seq1  GCATGTACATGTATGTGCATGTGTGTGTATGCATGAACATGTTTACTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGTACATGTATGTGCATGTGTGTGTATGCATGAACATGTTTACTTGT  200

seq1  GTGCATGTATGCATGTCTATGTTCACTTGTATGCATGTATATGTGTATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCATGTATGCATGTCTATGTTCACTTGTATGCATGTATATGTGTATGT  250

seq1  ATGCATGTGTGTGTGCATATGCACATATTTATGAGGGACTTTTTATTAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCATGTGTGTGTGCATATGCACATATTTATGAGGGACTTTTTATTAAG  300

seq1  CCTTGGGAAGCTGCAAGTTGTGAGTGTGTCCTCATAAGTGTAAACAGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGAAGCTGCAAGTTGTGAGTGTGTCCTCATAAGTGTAAACAGATT  350

seq1  ATTTTTGCACATGTTTATTTGAAAGAATCATATCAGAGTAACGTTTATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGCACATGTTTATTTGAAAGAATCATATCAGAGTAACGTTTATAA  400

seq1  AAGTTAGGATTAGGGCTTAGCAAACACAGAAGTGGATGCTAACAGTCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAGGATTAGGGCTTAGCAAACACAGAAGTGGATGCTAACAGTCAGC  450

seq1  TATTGGATGGATTACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTATCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGGATGGATTACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTATCCA  500

seq1  AGGAGCTAAAGAGATCTGCAACTCTATAGGTAGAACAACATTATGAACTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCTAAAGAGATCTGCAACTCTATAGGTAGAACAACATTATGAACTA  550

seq1  ACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTACCCCGGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATGG  600

seq1  CCTAGTCGGCCATTACTGGAAAGAGAGGCCCATTGGACTTGC-AAACTTT  649
      ||||||||||||||||||||||||||||| | |||||||||| |||||||
seq2  CCTAGTCGGCCATTACTGGAAAGAGAGGCTCCTTGGACTTGCAAAACTTT  650

seq1  ATATGCCCCAGTACAGAGGAACGTCAGGGCCAAAAAGGGGGAGTGGG-TG  698
      |||||||||||||||||||||| ||||| | |||||||||||||||| ||
seq2  ATATGCCCCAGTACAGAGGAAC-TCAGGCCAAAAAAGGGGGAGTGGGCTG  699

seq1  GGTA  702
      ||||
seq2  GGTA  703