BAC Information

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BAC

Clone NameB6Ng01-006P05
Chromosome17 (Build37)
Map Location 78,507,748 - 78,625,815
singlet/doubletdoublet
Overlap geneLOC668795, LOC383275, Crim1
Upstream geneLOC545234, LOC100043887
Downstream geneFez2, LOC100043888, Hdac1-ps, Vit, Strn, Heatr5b, 2310002B06Rik, EG625054, Eif2ak2, 2410078J06Rik, Cebpz, 2410091C18Rik, Prkcn, LOC675425, Qpct, LOC668812
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-006P05.bB6Ng01-006P05.g
ACCDH843667DH843668
length5881,047
definitionDH843667|Mus musculus domesticus DNA, BAC clone: B6Ng01-006P05, 5' end.DH843668|Mus musculus domesticus DNA, BAC clone: B6Ng01-006P05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,625,222 - 78,625,815)(78,507,748 - 78,508,797)
sequence
tccaccaaagaattcaattggaaggaaactgaggatacagttgtatgtcc
tgaaaaggggcaagaagctggggcaagcatcatcaacctgacacttgtcc
agcataccttttcccaaggtcagtgactgacctcagtgtggtccatccat
aagagagaggagagaaaagtaagcaacaatgaacttcaatgttccttgtt
cccatcactaacttaacacactgtttgtccagtagggtaggttctgttct
aaggttaaaaaggagatgcagtttcttttgggtggaggtagggagaggtc
tttcttaccttctgatacatttgctttctgaagtgagacatgtgctcagt
ccggacagtctctggccattcccggtttccatccatccttttcagcatcc
atgacttcctgtgcacccttctctttacctcaaatcccttcctcaatacc
ctaccttctgtagcagcttacatgcctgaagccatctttgctgagggttc
accctccacctagcagcaacacacctgttcctacctgtttaccctctggg
tagaagcctcctgagctgctctgggggatgggggagtt
gaattcccacccctaaccaagaagccatgagcaactgataccctctggga
aaggggaaatcagttttctccagagtgtcgctgaagctcaacgcatcaac
cacactcggagcaggccatatgcccaggagtagttagcccaaacaagcca
gtctgtgtgcttttctttctttgtgagcttcttgtttcattttggtttag
atttttgagtcaggagggtgtggctgtgggtagcaatgcagaatgccaat
gctatttgtatagttgaattataggcaatatcgttctttattttttctac
atgggatagtctttagagtaccatgacctagactctatgaaatgggtttg
aatacttgacatcaggagcctgacgtcatacacattctaagcaaagcatt
caatttaaacccaaattagaactgataactagtatctgaaatctttgctt
agatttattagggtatgtatatatagtcaagcacaataactaagaatctg
tttctactattcttaaaagaaaacactaattttaagctgcctttaacctt
tctggttggctgttctcctgtacaagagacagccatggcacccagccagt
atggcatgatcctaaacccccaactttcacaaggattggcagcagcgagt
gtacacttagttcaatcagcaggcactaaagatctgcagactcaaggccc
gcaaggcaaagcgttccgcattgccccttgacccacgtccagacccatca
ggccctacagttagatatcataccaaggtccgggctggaagaactgagcg
tggctggtaatccatatgaaaatggcttctcactattgggcatttctgtg
gacacaagaggccacacaaatccactgaatcactacaggccaatgtgcag
tgcctgaaggagtacgactccaagcttctacttttccccagaagcctcct
gcttccaagaagggagatagttctgatgacgaacttaattggccacccag
ctgacagaactgtggatgccctcgaatgtgttaagaaaaaaaaaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_78625222_78625815
seq2: B6Ng01-006P05.b_50_643 (reverse)

seq1  AACTCCCCCATCCCCCAGAGCAGCTCAGGAGGCTTCTACCCAGAGGGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCCCCATCCCCCAGAGCAGCTCAGGAGGCTTCTACCCAGAGGGTAA  50

seq1  ACAGGTAGGAACAGGTGTGTTGCTGCTAGGTGGAGGGTGAACCCTCAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTAGGAACAGGTGTGTTGCTGCTAGGTGGAGGGTGAACCCTCAGCA  100

seq1  AAGATGGCTTCAGGCATGTAAGCTGCTACAGAAGGTAGGGTATTGAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGGCTTCAGGCATGTAAGCTGCTACAGAAGGTAGGGTATTGAGGAA  150

seq1  GGGATTTGAGGTAAAGAGAAGGGTGCACAGGAAGTCATGGATGCTGAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTGAGGTAAAGAGAAGGGTGCACAGGAAGTCATGGATGCTGAAAA  200

seq1  GGATGGATGGAAACCGGGAATGGCCAGAGACTGTCCGGACTGAGCACATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGATGGAAACCGGGAATGGCCAGAGACTGTCCGGACTGAGCACATG  250

seq1  TCTCACTTCAGAAAGCAAATGTATCAGAAGGTAAGAAAGACCTCTCCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTTCAGAAAGCAAATGTATCAGAAGGTAAGAAAGACCTCTCCCTA  300

seq1  CCTCCACCCAAAAGAAACTGCATCTCCTTTTTAACCTTAGAACAGAACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCACCCAAAAGAAACTGCATCTCCTTTTTAACCTTAGAACAGAACCT  350

seq1  ACCCTACTGGACAAACAGTGTGTTAAGTTAGTGATGGGAACAAGGAACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTACTGGACAAACAGTGTGTTAAGTTAGTGATGGGAACAAGGAACAT  400

seq1  TGAAGTTCATTGTTGCTTACTTTTCTCTCCTCTCTCTTATGGATGGACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTTCATTGTTGCTTACTTTTCTCTCCTCTCTCTTATGGATGGACCA  450

seq1  CACTGAGGTCAGTCACTGACCTTGGGAAAAGGTATGCTGGACAAGTGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAGGTCAGTCACTGACCTTGGGAAAAGGTATGCTGGACAAGTGTCA  500

seq1  GGTTGATGATGCTTGCCCCAGCTTCTTGCCCCTTTTCAGGACATACAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGATGATGCTTGCCCCAGCTTCTTGCCCCTTTTCAGGACATACAACT  550

seq1  GTATCCTCAGTTTCCTTCCAATTGAATTCTTTGGTGGAGAATTC  594
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCTCAGTTTCCTTCCAATTGAATTCTTTGGTGGAGAATTC  594

seq1: chr17_78507748_78508797
seq2: B6Ng01-006P05.g_69_1115

seq1  GAATTCCCACCCCTAACCAAGAAGCCATGAGCAACTGATACCCTCTGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCACCCCTAACCAAGAAGCCATGAGCAACTGATACCCTCTGGGA  50

seq1  AAGGGGAAATCAGTTTTCTCCAGAGTGTCGCTGAAGCTCAACGCATCAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGAAATCAGTTTTCTCCAGAGTGTCGCTGAAGCTCAACGCATCAAC  100

seq1  CACACTCGGAGCAGGCCATATGCCCAGGAGTAGTTAGCCCAAACAAGCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTCGGAGCAGGCCATATGCCCAGGAGTAGTTAGCCCAAACAAGCCA  150

seq1  GTCTGTGTGCTTTTCTTTCTTTGTGAGCTTCTTGTTTCATTTTGGTTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGTGCTTTTCTTTCTTTGTGAGCTTCTTGTTTCATTTTGGTTTAG  200

seq1  ATTTTTGAGTCAGGAGGGTGTGGCTGTGGGTAGCAATGCAGAATGCCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGAGTCAGGAGGGTGTGGCTGTGGGTAGCAATGCAGAATGCCAAT  250

seq1  GCTATTTGTATAGTTGAATTATAGGCAATATCGTTCTTTATTTTTTCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTTGTATAGTTGAATTATAGGCAATATCGTTCTTTATTTTTTCTAC  300

seq1  ATGGGATAGTCTTTAGAGTACCATGACCTAGACTCTATGAAATGGGTTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGATAGTCTTTAGAGTACCATGACCTAGACTCTATGAAATGGGTTTG  350

seq1  AATACTTGACATCAGGAGCCTGACGTCATACACATTCTAAGCAAAGCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTGACATCAGGAGCCTGACGTCATACACATTCTAAGCAAAGCATT  400

seq1  CAATTTAAACCCAAATTAGAACTGATAACTAGTATCTGAAATCTTTGCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTAAACCCAAATTAGAACTGATAACTAGTATCTGAAATCTTTGCTT  450

seq1  AGATTTATTAGGGTATGTATATATAGTCAAGCACAATAACTAAGAATCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTATTAGGGTATGTATATATAGTCAAGCACAATAACTAAGAATCTG  500

seq1  TTTCTACTATTCTTAAAAGAAAACACTAATTTTAAGCTGCCTTTAACCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACTATTCTTAAAAGAAAACACTAATTTTAAGCTGCCTTTAACCTT  550

seq1  TCTGGTTGGCTGTTCTCCTGTACAAGAGACAGCCATGGCACCCAGCCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTGGCTGTTCTCCTGTACAAGAGACAGCCATGGCACCCAGCCAGT  600

seq1  ATGGCATGATCCTAAACCCCCAACTTTCACAAGGATTGGCAGCAGCGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCATGATCCTAAACCCCCAACTTTCACAAGGATTGGCAGCAGCGAGT  650

seq1  GTACACTTAGTTCAATCAGCAGGCACTAAAGATCTGCAGACTCAAGGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACTTAGTTCAATCAGCAGGCACTAAAGATCTGCAGACTCAAGGCCC  700

seq1  GCAAGGCAAAGCGTTCCGCATTGCCCCTTGACCCACGTCCAGACCCATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGCAAAGCGTTCCGCATTGCCCCTTGACCCACGTCCAGACCCATCA  750

seq1  GGCCCTACAGTTAGATATCATACCAAGGTCCGGGCTGGAAGAACTGAGCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTACAGTTAGATATCATACCAAGGTCCGGGCTGGAAGAACTGAGCG  800

seq1  TGGCTGGT-ATCCATATGAAAATGGC-TCTCACTATT-GGCATTTCTGTG  847
      |||||||| ||||||||||||||||| |||||||||| ||||||||||||
seq2  TGGCTGGTAATCCATATGAAAATGGCTTCTCACTATTGGGCATTTCTGTG  850

seq1  GACACAAGAAGGCCACACAAATCCACTGAATCACTACAGGCCAATGTGCA  897
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GACACAAG-AGGCCACACAAATCCACTGAATCACTACAGGCCAATGTGCA  899

seq1  GTGCCTGAAGGAGTACGACTCCAAGC-TCTACTTTTCCCCAGGAAGCCTT  946
      |||||||||||||||||||||||||| |||||||||||||| ||||||| 
seq2  GTGCCTGAAGGAGTACGACTCCAAGCTTCTACTTTTCCCCA-GAAGCCTC  948

seq1  CTGCTCCCAAGAAGGGAGATAGTTCTGATGACGAACTTAAATTGGCCACC  996
      ||||| |||||||||||||||||||||||||||||||| |||||||||||
seq2  CTGCTTCCAAGAAGGGAGATAGTTCTGATGACGAACTT-AATTGGCCACC  997

seq1  CAGCTGACAGGACCTGT-GATGCCCATCGGAAATGTGTATAAGAAAAAAA  1045
      ||||||||| || |||| ||||||| |||  ||||||| |||||||||||
seq2  CAGCTGACA-GAACTGTGGATGCCC-TCG--AATGTGT-TAAGAAAAAAA  1042

seq1  AAAAG  1050
      |||||
seq2  AAAAG  1047