BAC Information

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BAC

Clone NameB6Ng01-007C14
Chromosome17 (Build37)Y (Build37)
Map Location 76,778,092 - 76,779,1821,870,430 - 1,870,479
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLtbp1, Rasgrp3, 2810405J04Rik, LOC668787, LOC100043885, LOC100043886
Downstream geneEG624348, LOC545234
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007C14.bB6Ng01-007C14.g
ACCDH843817DH843818
length1,081500
definitionDH843817|Mus musculus domesticus DNA, BAC clone: B6Ng01-007C14, 5' end.DH843818|Mus musculus domesticus DNA, BAC clone: B6Ng01-007C14, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(76,778,092 - 76,779,182)(1,870,430 - 1,870,479)
sequence
gaattcaaaatacgtttattaacaaagattctatttactatttccagtag
gacgaagaaatattaaagaggataggaagcataaaagaagaagaaaaaga
aaaagcttatcagtgcataagtttactatctatctatctatctatctatc
tatctatctatctatctataactatctatctattgatggttaagtaatta
agatgattggctagtttggaaaccagtctttagattcctggccaatgtat
gtacattaaatgaatatcataattttattcaatgacttcaagaacacttt
ttttctctattccactatgtatgacttttgtttgtctataacaaaagttg
ccatcttcaaagttatgagtttgaagtaggaatatacttgtcagctcttt
attttttctttacttttctcatgcctctctgtgaaaataaattactccag
atcaaatatatttttgatgtatttgcaaactggttattgggagaaactgc
agactcagtagtcacaggaatgagcctgagaagctgtcatttcaaggtaa
ttacatttgcctacattagaaaatagtaaatgctatctctacttcatatc
cccctattggaagcttagattttacaaaacccattttaatgagtgttttt
gaatgctttaacctcccttctattccaccacccatcaaaggcagttgaaa
gggaaggttaatagaccaaagtgggacctgtttagaaattgttctttatg
gcagttcaaatcattgttgttaggataacagcagtttggttcccatggat
cagcagaggtatttctttctttttttttcctcccgccctcagcagaggta
tttcaattcacttgcaaacaccattcacaaatcaccaatggtagtgtgat
ggagaagaaaccatgaagctctgtcaatcacctggagtccattgaagtca
tagaagcttgtgtgacaccaccagaagtcttggtacatttttatctacaa
gtcacaacaatgatgatcagtgagagcaggcataccattgctattgttta
tcattgaagatcaccataagcaagcccaaca
gaattcactaggaattcagtgagaaggttacctattcagtaacattcaaa
tttacttctagtagagacagtgaaactaattaggcattacaaagaatgga
gctagaatagctccaggctagtctacagagtgattacttaggacttagga
cagtaaccaagtctcaaccaaacaagggaatacacaatggcctagtgaat
aggtagatttgccttaaaagagttagggaatcctcctgagacaggtttct
tcactaggcccaaaggaacagcataaatcaggcatttactaagaacccct
gttgatgggcttaacaatagactactagcattacacctggctcccttctg
tccccaccatcttttgatgtatacattccttttgttttgtgtcactgtaa
cttagcagatgtgttcgcctggtttcttgtcattcttctgtataaaaagt
ttgactctagctgcatatgtatcaaaagatggcctaatcggccatcactg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_76778092_76779182
seq2: B6Ng01-007C14.b_47_1127

seq1  GAATTCAAAATACGTTTATTAACAAAGATTCTATTTACTATTTCCAGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAATACGTTTATTAACAAAGATTCTATTTACTATTTCCAGTAG  50

seq1  GACGAAGAAATATTAAAGAGGATAGGAAGCATAAAAGAAGAAGAAAAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGAAGAAATATTAAAGAGGATAGGAAGCATAAAAGAAGAAGAAAAAGA  100

seq1  AAAAGCTTATCAGTGCATAAGTTTACTATCTATCTATCTATCTATCTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGCTTATCAGTGCATAAGTTTACTATCTATCTATCTATCTATCTATC  150

seq1  TATCTATCTATCTATCTATAACTATCTATCTATTGATGGTTAAGTAATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTATCTATCTATCTATAACTATCTATCTATTGATGGTTAAGTAATTA  200

seq1  AGATGATTGGCTAGTTTGGAAACCAGTCTTTAGATTCCTGGCCAATGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATTGGCTAGTTTGGAAACCAGTCTTTAGATTCCTGGCCAATGTAT  250

seq1  GTACATTAAATGAATATCATAATTTTATTCAATGACTTCAAGAACACTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATTAAATGAATATCATAATTTTATTCAATGACTTCAAGAACACTTT  300

seq1  TTTTCTCTATTCCACTATGTATGACTTTTGTTTGTCTATAACAAAAGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCTATTCCACTATGTATGACTTTTGTTTGTCTATAACAAAAGTTG  350

seq1  CCATCTTCAAAGTTATGAGTTTGAAGTAGGAATATACTTGTCAGCTCTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTCAAAGTTATGAGTTTGAAGTAGGAATATACTTGTCAGCTCTTT  400

seq1  ATTTTTTCTTTACTTTTCTCATGCCTCTCTGTGAAAATAAATTACTCCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTCTTTACTTTTCTCATGCCTCTCTGTGAAAATAAATTACTCCAG  450

seq1  ATCAAATATATTTTTGATGTATTTGCAAACTGGTTATTGGGAGAAACTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATATATTTTTGATGTATTTGCAAACTGGTTATTGGGAGAAACTGC  500

seq1  AGACTCAGTAGTCACAGGAATGAGCCTGAGAAGCTGTCATTTCAAGGTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCAGTAGTCACAGGAATGAGCCTGAGAAGCTGTCATTTCAAGGTAA  550

seq1  TTACATTTGCCTACATTAGAAAATAGTAAATGCTATCTCTACTTCATATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTTGCCTACATTAGAAAATAGTAAATGCTATCTCTACTTCATATC  600

seq1  CCCCTATTGGAAGCTTAGATTTTACAAAACCCATTTTAATGAGTGTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTATTGGAAGCTTAGATTTTACAAAACCCATTTTAATGAGTGTTTTT  650

seq1  GAATGCTTTAACCTCCCTTCTATTCCACCACCCATCAAAGGCAGTTGAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCTTTAACCTCCCTTCTATTCCACCACCCATCAAAGGCAGTTGAAA  700

seq1  GGGAAGGTTAATAGACCAAAGTGGGACCTGTTTAGAAATTGTTCTTTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGGTTAATAGACCAAAGTGGGACCTGTTTAGAAATTGTTCTTTATG  750

seq1  GCAGTTCAAATCATTGTTGTTAGGATAACAGCAGTTTGGTTCCCATGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTCAAATCATTGTTGTTAGGATAACAGCAGTTTGGTTCCCATGGAT  800

seq1  CAGCAGAGGTATTTCTTTCTTTTTTTTTCCTCCCGCCCTCAGCAGAGGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGAGGTATTTCTTTCTTTTTTTTTCCTCCCGCCCTCAGCAGAGGTA  850

seq1  TTTCAATTCACTTGCAAACACCATTCACAAATCACCAATGGTAGTGTGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATTCACTTGCAAACACCATTCACAAATCACCAATGGTAGTGTGAT  900

seq1  GGAGAAGAAACCATGAAGCTCTGTCAATCACCTGGAGTCCATTGAAGTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGAAACCATGAAGCTCTGTCAATCACCTGGAGTCCATTGAAGTCA  950

seq1  TAAGAAGC-TGTGTGAACACCACCAGAAGTCTTTGGTACATTTTTATCTA  999
      | |||||| |||||| ||||||||||||||| ||||||||||||||||||
seq2  T-AGAAGCTTGTGTG-ACACCACCAGAAGTC-TTGGTACATTTTTATCTA  997

seq1  CAAAGTCACAACAAATGATGATCAGTGAAGAAGGCAAGGCATACCATTGC  1049
      | |||||||||| |||||||||||||| |||  || ||||||||||||||
seq2  C-AAGTCACAAC-AATGATGATCAGTG-AGA--GC-AGGCATACCATTGC  1041

seq1  TATTGTGTTATCATTGAAGATCACCATAAGCAAAGCCCAACA  1091
      |||||| |||||||||||||||||||||||| ||||||||||
seq2  TATTGT-TTATCATTGAAGATCACCATAAGC-AAGCCCAACA  1081

seq1: chrY_1870430_1870479
seq2: B6Ng01-007C14.g_516_565

seq1  TTGACTCTTGCTGCATAGGTATCAAAAGATGGCCTAGTCGGCCATCACTG  50
      |||||||| |||||||| |||||||||||||||||| |||||||||||||
seq2  TTGACTCTAGCTGCATATGTATCAAAAGATGGCCTAATCGGCCATCACTG  50