BAC Information

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BAC

Clone NameB6Ng01-007F12
Chromosome3 (Build37)17 (Build37)
Map Location 79,442,346 - 79,442,86665,602,730 - 65,603,296
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766, Rapgef2, LOC100041741, LOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik
Downstream geneRxfp1, Tmem144, 1110032E23Rik, EG626797
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007F12.bB6Ng01-007F12.g
ACCDH843942DH843943
length1,104871
definitionDH843942|Mus musculus domesticus DNA, BAC clone: B6Ng01-007F12, 5' end.DH843943|Mus musculus domesticus DNA, BAC clone: B6Ng01-007F12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(79,442,346 - 79,442,866)(65,602,730 - 65,603,296)
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct
ttttgtcttatagacagtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tccacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggttttttgttattccagatg
aatttgcaaattgctccttctaattcgttgaagaattgagttggaatttt
aatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttggtcctgccaatccatgagcatggggagatctttccatct
tctgagatcttctttaatttctttcttcagggacttgaagtttttatcat
acagatctttcaccttccttcgttagagtcacgccgagatattttatata
tttgtggctattgagaaggtgtgttccctaatttccttctcaggcctgtt
tatctttgtgtaagaaggcccattgacttgttggagttaattttatatcc
agctacttcaccgaaggctgttatcagggttaggagttctctggttggaa
tttt
gaattcaatataaagaactgatttaaaagtgtttgtgtgcctgaacaagt
ttatgagcaccatatacatgagtccttggagaccagataatgatgcggaa
tttcctggaactagagctataaagcaggtatgaaccatgatgtgagtcct
gggaatggaaccaaagtcgggtcctttgcaagagcagtaagtgttttttg
tttttttgttttttaaattggatatttttttatttacatttcaaatgtca
tcccctttcctcctgagacccctatcccatccctcctccccctgcttcta
tgagggtgttcccctacctgcctacccactcccacctccacgtcttctct
ttcccctacactggggcatagagccttcacaggaccaagggcctctcttc
ccattgatgaccaacaatgccatcctctgccacatatgtggctggagcca
tggatcccttcatgtgaactcgtaggttggtggtttagtccccgtgatga
gtcattgttccagccccaaggaattgtttttaaaaagatgtttcagaact
gaaattactggaaggtgtatataggactaacacggaactatagggaatgc
tcatcctttagctccagggactcaataacacttgagttctgtagagcgga
ggtgacacctcacagaggaggactcagacctttggtgaggagactgctgt
ctcctgttgctggtgcctcactgtgagggacacagtggaacttggtttgg
agagcacagacaagaagtcatcaaaagaggacagctgtcttgttatagat
caacactgctggaaaagcaaatcagaaacaaccgatccctcttctctcaa
ttttcttcagctgttgtttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_79442346_79442866
seq2: B6Ng01-007F12.b_630_1148 (reverse)

seq1  AAAATTCCAA-CAGAGAACTCCTAAACCTGATAAACAG-CTTCGGTGAAG  48
      |||||||||| |||||||||||||| |||||| ||||| |||||||||||
seq2  AAAATTCCAACCAGAGAACTCCTAACCCTGAT-AACAGCCTTCGGTGAAG  49

seq1  TAGCTGGATATAAAATTAACTCAAACAAGTCAATGGCCTTTCTCTACACA  98
      |||||||||||||||||||||| ||||||||||||| | |||| ||||||
seq2  TAGCTGGATATAAAATTAACTCCAACAAGTCAATGGGCCTTCT-TACACA  98

seq1  AAGAATAAACAGG-CTGAGAAAGAAATTAGGGAAACAACAC-CCTTCTCA  146
      ||| ||||||||| ||||||| ||||||||||    ||||| ||||||||
seq2  AAG-ATAAACAGGCCTGAGAAGGAAATTAGGG----AACACACCTTCTCA  143

seq1  ATAGCCACAAATAATATAAAATATCTCGGCGTGACTCTAACGAAGGAA-G  195
      |||||||||||| ||||||||||||||||||||||||||||||||||| |
seq2  ATAGCCACAAAT-ATATAAAATATCTCGGCGTGACTCTAACGAAGGAAGG  192

seq1  TGAAAGATCTGTATGATAAAAACTTCAAGTCCCTGAAGAAAGAAATTAAA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGATCTGTATGATAAAAACTTCAAGTCCCTGAAGAAAGAAATTAAA  242

seq1  GAAGATCTCAGAAGATGGAAAGATCT-CCCATGCTCATGGATTGGCAGGA  294
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GAAGATCTCAGAAGATGGAAAGATCTCCCCATGCTCATGGATTGGCAGGA  292

seq1  CCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAAT  342

seq1  GCAATCCCCATTAAAATTCCAACTCAATTCTTCAACGAATTAGAAGGAGC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCCCCATTAAAATTCCAACTCAATTCTTCAACGAATTAGAAGGAGC  392

seq1  AATTTGCAAATTCATCTGGAATAACAAAAAACCGAGGATAGCAAAAACTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGCAAATTCATCTGGAATAACAAAAAACCGAGGATAGCAAAAACTC  442

seq1  TTCTCAAGGATAAAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAGGATAAAAGAACCTCTGGTGGAATCACCATGCCTGACCTAAAG  492

seq1  CTTTACTACAGAGCAATTGTGATAAAA  521
      |||||||||||||||||||||||||||
seq2  CTTTACTACAGAGCAATTGTGATAAAA  519

seq1: chr17_65602730_65603296
seq2: B6Ng01-007F12.g_375_935 (reverse)

seq1  GGAAACAACAGCTGAAGGAAAATTGAGAGAAGAGGGGATCGGGTTGTTTC  50
      |||||||||||||||| |||||||||||||||| |||||| |||||||||
seq2  GGAAACAACAGCTGAA-GAAAATTGAGAGAAGA-GGGATC-GGTTGTTTC  47

seq1  TGGATTTTGCTTTTCCAGGCAGTG-TGATCTATAAC-AGACAGCTTGTTC  98
      ||   |||||||||||| |||||| ||||||||||| ||||||||   ||
seq2  TG--ATTTGCTTTTCCA-GCAGTGTTGATCTATAACAAGACAGCT--GTC  92

seq1  CTCTTTTGATGACTTCTTTGTCTGTGCTCTCCAAACC-AGTTCCACTGTG  147
      |||||||||||||||| |||||||||||||||||||| ||||||||||||
seq2  CTCTTTTGATGACTTC-TTGTCTGTGCTCTCCAAACCAAGTTCCACTGTG  141

seq1  TCCCTCACAGTGAGGCACCAGCAACAGGAGACAGCAGTCTCCTCACCAAA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCACAGTGAGGCACCAGCAACAGGAGACAGCAGTCTCCTCACCAAA  191

seq1  GGTCTGAGTCCTCCTCTGTGAGGTGTCACCTCCGCTCTACAGAACTCAAG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGAGTCCTCCTCTGTGAGGTGTCACCTCCGCTCTACAGAACTCAAG  241

seq1  TGTTATTGAGTCCCTGGAGCTAAAGGATGAGCATTCCCTATAGTTCCGTG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTGAGTCCCTGGAGCTAAAGGATGAGCATTCCCTATAGTTCCGTG  291

seq1  TTAGTCCTATATACACCTTCCAGTAATTTCAGTTCTGAAACATCTTTTTA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCCTATATACACCTTCCAGTAATTTCAGTTCTGAAACATCTTTTTA  341

seq1  AAAACAATTCCTTGGGGCTGGAACAATGACTCATCACGGGGACTAAACCA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAATTCCTTGGGGCTGGAACAATGACTCATCACGGGGACTAAACCA  391

seq1  CCAACCTACGAGTTCACATGAAGGGATCCATGGCTCCAGCCACATATGTG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACCTACGAGTTCACATGAAGGGATCCATGGCTCCAGCCACATATGTG  441

seq1  GCAGAGGATGGCATTGTTGGTCATCAATGGGAAGAGAGGCCCTTGGTCCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGATGGCATTGTTGGTCATCAATGGGAAGAGAGGCCCTTGGTCCT  491

seq1  GTGAAGGCTCTATGCCCCAGTGTAGGGGAAAGAGAAGACGTGGAGGTGGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGGCTCTATGCCCCAGTGTAGGGGAAAGAGAAGACGTGGAGGTGGG  541

seq1  AGTGGGTAGGCAGGTAGGGG  567
      ||||||||||||||||||||
seq2  AGTGGGTAGGCAGGTAGGGG  561