BAC Information

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BAC

Clone NameB6Ng01-007H03
Chromosome17 (Build37)
Map Location 15,134,631 - 15,135,430
singlet/doubletsinglet
Overlap geneLOC100041639
Upstream geneEG664821, EG664831, 4930488N24Rik, Dact2, Smoc2, LOC664856, Thbs2, LOC100041236, Wdr27, LOC664893, 1600012H06Rik, Phf10, LOC100041586, LOC100041574, LOC100041289
Downstream geneLOC100041621, LOC100041301, 9030025P20Rik, Tcte3, C330048F19, LOC664953, Dll1, LOC100041314, 4932442K08Rik, Psmb1, Tbp, Pdcd2, LOC636398, Prdm9, EG626573, LOC665017, LOC100041775, 5830433I10Rik, Chd1, Rgmb, LOC100041365, Eif3s6-ps3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-007H03.bB6Ng01-007H03.g
ACCDH844011DH844012
length350880
definitionDH844011|Mus musculus domesticus DNA, BAC clone: B6Ng01-007H03, 5' end.DH844012|Mus musculus domesticus DNA, BAC clone: B6Ng01-007H03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
tcttcttgaggctttgtaatgcctaggatcttgaggaagctttgaatata
aaatgccaggtacatcatctggaccagtagctatctctgaataaaagcta
aacatcaaatatctgcctttaagatacccaacattcagacagcctacaga
atgaggaaaatgtttttaggaactataggtccaataatgggctaatatcc
atatatatccatatatgtatgtatgtatgtatgtatgtatgtatgtgtgt
atgtatctatctatctatctatctatctatctatctatctatctctacat
atatccagatatatatgtatatatgcaaatgacttgttggataaaaaaag

gaattctggagtgactgataggcttatttcctgcccctttctacatgtaa
tctgctgtctgaggtggaaggtggcctataggggttagcctgttgtcttc
tctgaataaagtgcaacttaaagattcaattcctgtctattcatgtctct
gcctgaatagcatgagccctgctatttagtcatagtaacaccacctgtaa
ctttcctactcttcagtgcatggatttcatgtgctgcagttccgcatgga
cgtaggacctcctctgtctgtaactctgagctcagcacccatctgcctgt
ctatcacagtcagggttactattgttgtgatgaaacttcatgaccaaaag
cgacttgaagaggacagggtttgtttggcttgcacatcctgaatcacagg
tccactcagagaaactgcagcaagaaagcaaactaaacaggaacctggag
gcagggcctgacacagaggccatgggggcaatgcttaccagcctgatcag
cacccaggaaccaccagtccaggaatggcaccatccacaatgggctggag
tctcccgagttaatcactaattaagaaagtgccctacaggcttgtctaca
gtccagtcttatggaggcaacttttcagttgaggccccctcttttcatat
gactctaccgtgtgtcaagtttgatataaaactagccagcacaggttgga
gagattgctcagtggttaagagcactgccgggtcttccagaggtcctgag
ttcaactcccagcaactacatggtggctcacaagcatctataatgggatc
tgatgccctctttctggcatgcagtgtacatgcagatagagcacttatac
attaaataaataaaattaatctaaaacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_15134631_15135430
seq2: B6Ng01-007H03.g_66_866

seq1  GAATTCTGGAGTGACTGATAGGCTTATTTCCTGCCCCTTTCTACATGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGGAGTGACTGATAGGCTTATTTCCTGCCCCTTTCTACATGTAA  50

seq1  TCTGCTGTCTGAGGTGGAAGGTGGCCTATAGGGGTTAGCCTGTTGTCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTGTCTGAGGTGGAAGGTGGCCTATAGGGGTTAGCCTGTTGTCTTC  100

seq1  TCTGAATAAAGTGCAACTTAAAGATTCAATTCCTGTCTATTCATGTCTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATAAAGTGCAACTTAAAGATTCAATTCCTGTCTATTCATGTCTCT  150

seq1  GCCTGAATAGCATGAGCCCTGCTATTTAGTCATAGTAACACCACCTGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAATAGCATGAGCCCTGCTATTTAGTCATAGTAACACCACCTGTAA  200

seq1  CTTTCCTACTCTTCAGTGCATGGATTTCATGTGCTGCAGTTCCGCATGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTACTCTTCAGTGCATGGATTTCATGTGCTGCAGTTCCGCATGGA  250

seq1  CGTAGGACCTCCTCTGTCTGTAACTCTGAGCTCAGCACCCATCTGCCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGGACCTCCTCTGTCTGTAACTCTGAGCTCAGCACCCATCTGCCTGT  300

seq1  CTATCACAGTCAGGGTTACTATTGTTGTGATGAAACTTCATGACCAAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCACAGTCAGGGTTACTATTGTTGTGATGAAACTTCATGACCAAAAG  350

seq1  CGACTTGAAGAGGACAGGGTTTGTTTGGCTTGCACATCCTGAATCACAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTTGAAGAGGACAGGGTTTGTTTGGCTTGCACATCCTGAATCACAGG  400

seq1  TCCACTCAGAGAAACTGCAGCAAGAAAGCAAACTAAACAGGAACCTGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTCAGAGAAACTGCAGCAAGAAAGCAAACTAAACAGGAACCTGGAG  450

seq1  GCAGGGCCTGACACAGAGGCCATGGGGGCAATGCTTACCAGCCTGATCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGGCCTGACACAGAGGCCATGGGGGCAATGCTTACCAGCCTGATCAG  500

seq1  CACCCAGGAACCACCAGTCCAGGAATGGCACCATCCACAATGGGCTGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGGAACCACCAGTCCAGGAATGGCACCATCCACAATGGGCTGGAG  550

seq1  TCTCCCGAGTTAATCACTAATTAAGAAAGTGCCCTACAGGCTTGTCTACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCGAGTTAATCACTAATTAAGAAAGTGCCCTACAGGCTTGTCTACA  600

seq1  GTCCAGTCTTATGGAGGCAACTTTTCAGTTGAGGCCCCCTCTTTTCATAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGTCTTATGGAGGCAACTTTTCAGTTGAGGCCCCCTCTTTTCATAT  650

seq1  GACTCTACCGTGTGTCAAG-TTGATATAAAACTAGCCAGCACAGGTTGGA  699
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GACTCTACCGTGTGTCAAGTTTGATATAAAACTAGCCAGCACAGGTTGGA  700

seq1  GAGATTGCTCAGTGGTTAAGAGCACTGCCGGGTCTTCCAGAGGTCCTGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTGCTCAGTGGTTAAGAGCACTGCCGGGTCTTCCAGAGGTCCTGAG  750

seq1  TTCAACTCCCAGCAACTACATGGTGGCTCACAAGCATCTATAATGGGATC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACTCCCAGCAACTACATGGTGGCTCACAAGCATCTATAATGGGATC  800

seq1  T  800
      |
seq2  T  801