BAC Information

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BAC

Clone NameB6Ng01-008L12
Chromosome17 (Build37)
Map Location 21,568,816 - 21,697,871
singlet/doubletdoublet
Overlap geneZfp54, Zfp51, Zfp53, LOC100042508, Zfp52
Upstream geneEG627805, V1re5, EG627814, EG381065, EG224582, Fpr-rs3, EG433073, V1re2, V1re6, LOC100041976, V1re3, V1re1, V1re8, V1re7, V1re4, LOC627884, Ppp2r1a, V1rf5, Zfp160, LOC627912, LOC435509, EG627924, 4933430A09, EG665654, EG665662, LOC665666, EG665669, V1rf1, V1rf2, V1rf4, V1rf3, A830058L05Rik
Downstream geneBC049807, Zfp760, BC043476, 4930515G13Rik, 2610036F08Rik, LOC624960, 3110048L19Rik, 4930432O21Rik, LOC665820, LOC665825, LOC674332, LOC631010, EG665844, EG210853, LOC671007, EG240038, EG631624, 6330416L07Rik, Zfp758, 1300003B13Rik, EG210876
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-008L12.bB6Ng01-008L12.g
ACCDH844879DH844880
length1,116872
definitionDH844879|Mus musculus domesticus DNA, BAC clone: B6Ng01-008L12, 5' end.DH844880|Mus musculus domesticus DNA, BAC clone: B6Ng01-008L12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,696,749 - 21,697,871)(21,568,816 - 21,569,685)
sequence
gaattcacagtaatagatgtatcacatacctcatatctgtaaggcttttc
ggcagtatggattctgcaatgccttttaagatgtgataattcaaaacagg
acttaccacattctttgcattcataatgtatctcaggagaatgaattttc
tgatgccatcttaatgatgcacagtgggcaaaggatctgtcacactgctg
acatttgtaaggcttctctccagtatgccttctctgatggcttttaagtg
cagataactgcacaagtaactttccaccttctttgcatttgtatggtttc
tttgccgtatgcagtgtttgatctgttttaaggcttgaccactgattaaa
ggatttgccacaaatattgcatttgtaaggtttctctccagtatgaattc
tctgatggatactgaggcttgaggtggtactgaagtatttcctgcagtgc
ccacattgatatggcttttcttccatgtcaactgtttcttgcatgagact
atatagagagctgaaatggtcatcatgttcatcctgcttgtgctctttct
tttcagtgttgagtctttgatattgccgaatgttggaacacaaattgaaa
gatttctcacagtctttagattggcaagtgtcttcttctccgatgtgcat
actttttgtgtctatctgcgtttgatgagtcaacagaggcatccttctca
ttacagcatctgtagttgttagaggcttctgtagtgtcacttctattata
aagtgcacagttggagggttcatgaagcatttcgttgagctcattacatg
gacaagactcctttttcagttctcacagggtgatggacagtatcacatat
gcagtagttctctgaaaataagtacaactcagattaatagggcttgtttc
tagatgacatttgtgataaatgactgtctttataagtgaggtagaaatta
gctttgaatggaactcactcactacatatatctagtacaggggtcttcta
ttttaatcttttctcagaatggatgaggactttcatcgatctagggtcat
agttgtttgttactttctaatgtacagcaacaagataatggtcgggagtc
caatatacttttaaga
gaattcttgcatgggtcctgggctatctcacagaacacatggattattat
attcaaggtatatctggtcacctgtctggagcaaacgtgagtaccctgat
atggggagaagatatggtagccattatcagggtggacaaaagaatgagcg
ggagaacagtgatggcttcaagtgaaagagaaagaaagaactgaaaatgt
ttttctatatgcagttccaaatagaaagaattcctgatcatttaatttac
agtgcatctgcctattgtaactgttagaagacattgtgccttagtgcacc
tgaattgtggtgacttaatactggtataaaatgcaattttacttagctat
gatgacatcagattaggataattttacaaattataagcctaatgtgagtc
catgaaatagcattgttctgtaattgccttccttatatgtaggtattcat
tcatattacatccttcattttcttctcagtggaggatacacagacacctt
tctggaagatgatctcaggagtcagtgtagaaagttgacttaaaaacaac
tatgtggccaggcggtggtggtgcacgcttttaatcccagctcttgggag
gcaaaggcaggtggatttctgagttcaaggccagcctggtctagagtgag
ttccaggacagccagggctatacagagaaaccctgtctcaaaaaaaaaac
aaaaaaacaaaaccaaaacaaaacaaaacaaaacaaacaagcaaacaaaa
aaccccaactatataaaggaaagttaagaaacatagcagtggatgttcca
ggatgggatagataaccaatagtggtcctctcctctgtcagagctgaagg
gggaggagaaatgggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_21696749_21697871
seq2: B6Ng01-008L12.b_45_1160 (reverse)

seq1  TCTTAAAAGTA-ATTGTGACTCCGGAACAGTAATCTTTGTTGCTGTACAT  49
      ||||||||||| |||| |||||| || || | ||| ||||||||||||||
seq2  TCTTAAAAGTATATTG-GACTCCCGACCA-TTATC-TTGTTGCTGTACAT  47

seq1  TAGAAAGT-ACAAAC-ACTATGACCCTAAGATTCGATGAAAGTCTTCATC  97
      |||||||| |||||| ||||||||||| ||| |||||||||||| |||||
seq2  TAGAAAGTAACAAACAACTATGACCCT-AGA-TCGATGAAAGTCCTCATC  95

seq1  CATTTCTGAGGAAAAAAGATTAAAAATAG-AGACACATGTACTAGATATA  146
      || |||||||   |||||||| ||||||| |||| | |||||||||||||
seq2  CA-TTCTGAG---AAAAGATT-AAAATAGAAGACCCCTGTACTAGATATA  140

seq1  TGTAGTGAGTGAGTTCCATTCCAAAGCTAATTTCTTACCCTCACTTATAA  196
      |||||||||||||||||||| ||||||||||||||   ||||||||||||
seq2  TGTAGTGAGTGAGTTCCATT-CAAAGCTAATTTCT--ACCTCACTTATAA  187

seq1  AGACAGTCATTTATCACAAATGTCATCTAGAAACAAGCCCTATTAATCTG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTCATTTATCACAAATGTCATCTAGAAACAAGCCCTATTAATCTG  237

seq1  AGTTGTACTTATTTTCAGAGAACTACTGCATATGTGATACTGTCCATCAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGTTGTACTTATTTTCAGAGAACTACTGCATATGTGATACTGTCCATCAC  287

seq1  CCTGTGAGGACTG-AAAAGGAGTCTTGTCCATGTAATGAGCTCAACGAAA  345
      |||||||| |||| ||||||||||||||||||||||||||||||||||||
seq2  CCTGTGAGAACTGAAAAAGGAGTCTTGTCCATGTAATGAGCTCAACGAAA  337

seq1  TGCTTCATGAACCCTCCAACTGTGCACTTTATAATAGAAGTGACACTACA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTCATGAACCCTCCAACTGTGCACTTTATAATAGAAGTGACACTACA  387

seq1  GAAGCCTCTAACAACTACAGATGCTGTAATGAGAAGGATGCCTCTGTTGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCTCTAACAACTACAGATGCTGTAATGAGAAGGATGCCTCTGTTGA  437

seq1  CTCATCAAACGCAGATAGACAC-AAAAGTATGCACATCGGAGAAGAAGAC  494
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTCATCAAACGCAGATAGACACAAAAAGTATGCACATCGGAGAAGAAGAC  487

seq1  ACTTGCCAATCTAAAGACTGTGAGAAATCTTTCAATTTGTGTTCCAACAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCCAATCTAAAGACTGTGAGAAATCTTTCAATTTGTGTTCCAACAT  537

seq1  TCGGCAATATCAAAGACTCAACACTGAAAAGAAAGAGCACAAGCAGGATG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCAATATCAAAGACTCAACACTGAAAAGAAAGAGCACAAGCAGGATG  587

seq1  AACATGATGACCATTTCAGCTCTCTATATAGTCTCATGCAAGAAACAGTT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGATGACCATTTCAGCTCTCTATATAGTCTCATGCAAGAAACAGTT  637

seq1  GACATGGAAGAAAAGCCATATCAATGTGGGCACTGCAGGAAATACTTCAG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGGAAGAAAAGCCATATCAATGTGGGCACTGCAGGAAATACTTCAG  687

seq1  TACCACCTCAAGCCTCAGTATCCATCAGAGAATTCATACTGGAGAGAAAC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCACCTCAAGCCTCAGTATCCATCAGAGAATTCATACTGGAGAGAAAC  737

seq1  CTTACAAATGCAATATTTGTGGCAAATCCTTTAATCAGTGGTCAAGCCTT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAAATGCAATATTTGTGGCAAATCCTTTAATCAGTGGTCAAGCCTT  787

seq1  AAAACAGATCAAACACTGCATACGGCAAAGAAACCATACAAATGCAAAGA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGATCAAACACTGCATACGGCAAAGAAACCATACAAATGCAAAGA  837

seq1  AGGTGGAAAGTTACTTGTGCAGTTATCTGCACTTAAAAGCCATCAGAGAA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGAAAGTTACTTGTGCAGTTATCTGCACTTAAAAGCCATCAGAGAA  887

seq1  GGCATACTGGAGAGAAGCCTTACAAATGTCAGCAGTGTGACAGATCCTTT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATACTGGAGAGAAGCCTTACAAATGTCAGCAGTGTGACAGATCCTTT  937

seq1  GCCCACTGTGCATCATTAAGATGGCATCAGAAAATTCATTCTCCTGAGAT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACTGTGCATCATTAAGATGGCATCAGAAAATTCATTCTCCTGAGAT  987

seq1  ACATTATGAATGCAAAGAATGTGGTAAGTCCTGTTTTGAATTATCACATC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTATGAATGCAAAGAATGTGGTAAGTCCTGTTTTGAATTATCACATC  1037

seq1  TTAAAAGGCATTGCAGAATCCATACTGCCGAAAAGCCTTACAGATATGAG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGGCATTGCAGAATCCATACTGCCGAAAAGCCTTACAGATATGAG  1087

seq1  GTATGTGATACATCTATTACTGTGAATTC  1123
      |||||||||||||||||||||||||||||
seq2  GTATGTGATACATCTATTACTGTGAATTC  1116

seq1: chr17_21568816_21569685
seq2: B6Ng01-008L12.g_68_939

seq1  GAATTCTTGCATGGGTCCTGGGCTATCTCACAGAACACATGGATTATTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGCATGGGTCCTGGGCTATCTCACAGAACACATGGATTATTAT  50

seq1  ATTCAAGGTATATCTGGTCACCTGTCTGGAGCAAACGTGAGTACCCTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAGGTATATCTGGTCACCTGTCTGGAGCAAACGTGAGTACCCTGAT  100

seq1  ATGGGGAGAAGATATGGTAGCCATTATCAGGGTGGACAAAAGAATGAGCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGGAGAAGATATGGTAGCCATTATCAGGGTGGACAAAAGAATGAGCG  150

seq1  GGAGAACAGTGATGGCTTCAAGTGAAAGAGAAAGAAAGAACTGAAAATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAACAGTGATGGCTTCAAGTGAAAGAGAAAGAAAGAACTGAAAATGT  200

seq1  TTTTCTATATGCAGTTCCAAATAGAAAGAATTCCTGATCATTTAATTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTATATGCAGTTCCAAATAGAAAGAATTCCTGATCATTTAATTTAC  250

seq1  AGTGCATCTGCCTATTGTAACTGTTAGAAGACATTGTGCCTTAGTGCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCATCTGCCTATTGTAACTGTTAGAAGACATTGTGCCTTAGTGCACC  300

seq1  TGAATTGTGGTGACTTAATACTGGTATAAAATGCAATTTTACTTAGCTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTGTGGTGACTTAATACTGGTATAAAATGCAATTTTACTTAGCTAT  350

seq1  GATGACATCAGATTAGGATAATTTTACAAATTATAAGCCTAATGTGAGTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACATCAGATTAGGATAATTTTACAAATTATAAGCCTAATGTGAGTC  400

seq1  CATGAAATAGCATTGTTCTGTAATTGCCTTCCTTATATGTAGGTATTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAATAGCATTGTTCTGTAATTGCCTTCCTTATATGTAGGTATTCAT  450

seq1  TCATATTACATCCTTCATTTTCTTCTCAGTGGAGGATACACAGACACCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATTACATCCTTCATTTTCTTCTCAGTGGAGGATACACAGACACCTT  500

seq1  TCTGGAAGATGATCTCAGGAGTCAGTGTAGAAAGTTGACTTAAAAACAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAAGATGATCTCAGGAGTCAGTGTAGAAAGTTGACTTAAAAACAAC  550

seq1  TATGTGGCCAGGCGGTGGTGGTGCACGCTTTTAATCCCAGCTCTTGGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGCCAGGCGGTGGTGGTGCACGCTTTTAATCCCAGCTCTTGGGAG  600

seq1  GCAAAGGCAGGTGGATTTCTGAGTTCAAGGCCAGCCTGGTCTAGAGTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGGCAGGTGGATTTCTGAGTTCAAGGCCAGCCTGGTCTAGAGTGAG  650

seq1  TTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAAAAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAAAAAAC  700

seq1  AAAAAAACAAAACCAAAACAAAACAAAACAAAACAAACAAGCAAACAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACAAAACCAAAACAAAACAAAACAAAACAAACAAGCAAACAAAA  750

seq1  AACCCCAACTATAT-AAGGAAAGTTAAGAAACATAGCAGTGGATGTTCCA  799
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AACCCCAACTATATAAAGGAAAGTTAAGAAACATAGCAGTGGATGTTCCA  800

seq1  GGATGGGATAGATAACCAATAGTGGTCCTCTCCTCTGTCAGAGCTGAA-G  848
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGATGGGATAGATAACCAATAGTGGTCCTCTCCTCTGTCAGAGCTGAAGG  850

seq1  GGGAGGAGAAATGGGGGGGGGG  870
      ||||||||||||||||||||||
seq2  GGGAGGAGAAATGGGGGGGGGG  872