BAC Information

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BAC

Clone NameB6Ng01-009F21
Chromosome17 (Build37)
Map Location 51,782,112 - 51,959,829
singlet/doubletdoublet
Overlap geneSatb1
Upstream genePlcl2, EG654432, Tbc1d5, LOC100043451, LOC100043452
Downstream geneEG628919, LOC672987, EG328839
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009F21.bB6Ng01-009F21.g
ACCDH845328DH845329
length1,0031,036
definitionDH845328|Mus musculus domesticus DNA, BAC clone: B6Ng01-009F21, 5' end.DH845329|Mus musculus domesticus DNA, BAC clone: B6Ng01-009F21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,782,112 - 51,783,113)(51,958,806 - 51,959,829)
sequence
gaattcaaataagaatagctatgaataaatcctcccaggaaaactggtca
caggccagagagccaagggacacttctggctgagccatcttctgtacata
tgctctgttatcctaaatgattttatttctagttttaaagagagccagag
ataaaaggaaagtgggttaaaattgccttcctctcactggaagctggggt
agacagagtgatttggtctggacgtcagacagcacgattgaacattcaag
agcacctgtttatgtttattttttgccttcaggtaataaaaaattgagtt
tctactgctggaggctgctgctttgtgaacattagccacatgcaatggtt
ggaagctgtcgtctcctagttcaagcctgtggttcctgcctctgtaaata
tctggccctcctctgtgaccttgaaagccatctaggagcacttcttgaca
tttggtgccagtttaacataatagagatcttgggggattgcctctgtaat
tatagaaagaaaaatgatctacatcttgtggctagctccagtgaattcaa
ggcaggtgcctagatctcctgttcttcttcctttgagggcatctgagtcc
aatggtgtggcatgtcattataactatgtcttggacattctcatggctgg
ttgggtgggtggacagtgagtgactcaggaagtgaacaaggtgaataagc
agagttaagaccagtctggtgtaccaggtgactcagaaagagtggaggat
acttaaggctgcctcattgtttctctatgaatttttataagctggtattg
ctcttgattgcctaagaaaatggagtatgttatgcttgccatcaagccct
tatctgttttgtacaccaatgagtgggtttgttcttcaaagccacgtttt
ttaaatcaaagtcactctcttagctttccccatgtcagtccgggaagcct
ccatccacttctgaggtgggcgtggcagaaagcgcagtgcatttatgaat
aag
gaattctttcatcaacccctttgaactaacctctacttttgcttcatcaa
atttcaagcattaaaatgaggttgaatcattttctagctgagaagaattt
gtcccaggttgtggctttcctttgcttaagtgttctgtgatgtttgctca
tggcagtacagtaccagatactgcttttggcagatgtctccacagacatt
atttggactagttatttgggtctttatccttgcaactaaactctttacct
ttgcaactaaaccagaaaacactaataataataatattcataataataat
aatattcatatctctaaggaagtctgattggtatatcttggtgaaaggct
gggaagggctgtcggaattcataagagttagaatccttccagcttcccaa
gagtcctgccctcctaatcaaggttgaagtgtccctcagttattgtcaag
gcatccagggcatgtacagtttgagcactttggttctgctcaaatgcagt
gacaggatggaaaagaaaaagaaaaagatacgttttcaagtattagaaaa
gctcactcaaggttaaatagtggttaagaggggagggaaaataaaaatca
tattcaactgtgttggaaaaaaagggggtgggtgtagaggaaacttggat
agttctggctccagtaaataatagactggttgcagaactgagcttccatg
tgtaattttgtggttagtcgcttatgtctgcgatgataaatcacatacct
gcatagggatttttggcaccccagtaaaatctcaaacaagtgcccaaatg
ctaattttatcatgggttccctggacagcataccccctttttaccaactc
agggattctaatacccttgttcctaccccctttatctgtctgtttccaaa
caaatgtcctacactactactccttgagttttggaccacttacttctggt
tcctgcaatcaaccctgccttgtatggtgtccctggtgatttaggtaaaa
ctttagtttctgggtattcctagctggtctgttcga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_51782112_51783113
seq2: B6Ng01-009F21.b_47_1049

seq1  GAATTCAAATAAGAATAGCTATGAATAAATCCTCCCAGGAAAACTGGTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAATAAGAATAGCTATGAATAAATCCTCCCAGGAAAACTGGTCA  50

seq1  CAGGCCAGAGAGCCAAGGGACACTTCTGGCTGAGCCATCTTCTGTACATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCAGAGAGCCAAGGGACACTTCTGGCTGAGCCATCTTCTGTACATA  100

seq1  TGCTCTGTTATCCTAAATGATTTTATTTCTAGTTTTAAAGAGAGCCAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTGTTATCCTAAATGATTTTATTTCTAGTTTTAAAGAGAGCCAGAG  150

seq1  ATAAAAGGAAAGTGGGTTAAAATTGCCTTCCTCTCACTGGAAGCTGGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAGGAAAGTGGGTTAAAATTGCCTTCCTCTCACTGGAAGCTGGGGT  200

seq1  AGACAGAGTGATTTGGTCTGGACGTCAGACAGCACGATTGAACATTCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGTGATTTGGTCTGGACGTCAGACAGCACGATTGAACATTCAAG  250

seq1  AGCACCTGTTTATGTTTATTTTTTGCCTTCAGGTAATAAAAAATTGAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCTGTTTATGTTTATTTTTTGCCTTCAGGTAATAAAAAATTGAGTT  300

seq1  TCTACTGCTGGAGGCTGCTGCTTTGTGAACATTAGCCACATGCAATGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTGCTGGAGGCTGCTGCTTTGTGAACATTAGCCACATGCAATGGTT  350

seq1  GGAAGCTGTCGTCTCCTAGTTCAAGCCTGTGGTTCCTGCCTCTGTAAATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTGTCGTCTCCTAGTTCAAGCCTGTGGTTCCTGCCTCTGTAAATA  400

seq1  TCTGGCCCTCCTCTGTGACCTTGAAAGCCATCTAGGAGCACTTCTTGACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCCCTCCTCTGTGACCTTGAAAGCCATCTAGGAGCACTTCTTGACA  450

seq1  TTTGGTGCCAGTTTAACATAATAGAGATCTTGGGGGATTGCCTCTGTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGCCAGTTTAACATAATAGAGATCTTGGGGGATTGCCTCTGTAAT  500

seq1  TATAGAAAGAAAAATGATCTACATCTTGTGGCTAGCTCCAGTGAATTCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGAAAGAAAAATGATCTACATCTTGTGGCTAGCTCCAGTGAATTCAA  550

seq1  GGCAGGTGCCTAGATCTCCTGTTCTTCTTCCTTTGAGGGCATCTGAGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGGTGCCTAGATCTCCTGTTCTTCTTCCTTTGAGGGCATCTGAGTCC  600

seq1  AATGGTGTGGCATGTCATTATAACTATGTCTTGGACATTCTCATGGCTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGTGTGGCATGTCATTATAACTATGTCTTGGACATTCTCATGGCTGG  650

seq1  TTGGGTGGGTGGACAGTGAGTGACTCAGGAAGTGAACAAGGTGAATAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTGGGTGGACAGTGAGTGACTCAGGAAGTGAACAAGGTGAATAAGC  700

seq1  AGAGTTAAGACCAGTCTGGTGTACCAGGTGACTCAGAAAGAGTGGAGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTAAGACCAGTCTGGTGTACCAGGTGACTCAGAAAGAGTGGAGGAT  750

seq1  ACTTAAGGCTGCCTCATTGTTTCTCTATGAATTTTTATAAGCTGGTATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAAGGCTGCCTCATTGTTTCTCTATGAATTTTTATAAGCTGGTATTG  800

seq1  CTCTTGATTGCCTAAGAAAATGGAGTATGTTATGC-TGCCATCAAGCCCT  849
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTCTTGATTGCCTAAGAAAATGGAGTATGTTATGCTTGCCATCAAGCCCT  850

seq1  TATCTGTTTTGTACACCAATGAGTGGTTTTGTTCTTCAAAGCCACGTTTT  899
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TATCTGTTTTGTACACCAATGAGTGGGTTTGTTCTTCAAAGCCACGTTTT  900

seq1  TCAAATCAAAGTCACTCTCTTAGC-TTCCCCATGTCTAGCCGGGGAAGCC  948
      | |||||||||||||||||||||| ||||||||||| || | ||||||||
seq2  TTAAATCAAAGTCACTCTCTTAGCTTTCCCCATGTC-AGTCCGGGAAGCC  949

seq1  TCCAT-CACTTCTGAGGTGGGCGTGGCAGAAAGGCGCAGTGCATTTTAGA  997
      ||||| |||||||||||||||||||||||||| |||||||||||||  ||
seq2  TCCATCCACTTCTGAGGTGGGCGTGGCAGAAA-GCGCAGTGCATTTATGA  998

seq1  ATAAG  1002
      |||||
seq2  ATAAG  1003

seq1: chr17_51958806_51959829
seq2: B6Ng01-009F21.g_67_1102 (reverse)

seq1  TCGAACAGACCCACTAGG-ATACCCCTGAACTGAAGTTTTTAACCT-AAT  48
      |||||||||||  ||||| ||||||   |||| |||||||  |||| |||
seq2  TCGAACAGACCAGCTAGGAATACCCAGAAACTAAAGTTTT--ACCTAAAT  48

seq1  C-CCAGGGACA-CATAGCAAGGCAGGTTTG-TTGCAGGGACCAGAAGTGA  95
      | ||||||||| |||| ||||||||| ||| ||||||| ||||||||| |
seq2  CACCAGGGACACCATA-CAAGGCAGGGTTGATTGCAGGAACCAGAAGTAA  97

seq1  GTGTTCCAAAACTCAAGGAGTAGTTGTGTAGG-CATTTGTTT-GAAACAG  143
      ||| |||||||||||||||||||| ||||||| ||||||||| |||||||
seq2  GTGGTCCAAAACTCAAGGAGTAGTAGTGTAGGACATTTGTTTGGAAACAG  147

seq1  ACAGAT-AAGGGGGTAGGAAC-AGGGTATTAG-ATCCCTGAGTTGGTAAA  190
      |||||| |||||||||||||| |||||||||| |||||||||||||||||
seq2  ACAGATAAAGGGGGTAGGAACAAGGGTATTAGAATCCCTGAGTTGGTAAA  197

seq1  AA-GGGGTATGCTGTCCAAGGAA-CCATGAT-AAATTAGCATTTGGGCAC  237
      || ||||||||||||||| |||| ||||||| ||||||||||||||||||
seq2  AAGGGGGTATGCTGTCCAGGGAACCCATGATAAAATTAGCATTTGGGCAC  247

seq1  TTGTTTGAGA-TTTACTGGGGTGCCAAAAAT-CCTATGCAGGTATGTGAT  285
      |||||||||| |||||||||||||||||||| ||||||||||||||||||
seq2  TTGTTTGAGATTTTACTGGGGTGCCAAAAATCCCTATGCAGGTATGTGAT  297

seq1  TTATCATCGCAGACATAAGCGACTAACCACAAAATTACACATGGAAGCTC  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCATCGCAGACATAAGCGACTAACCACAAAATTACACATGGAAGCTC  347

seq1  AGTTCTGCAACCAGTCTATTATTTACTGGAGCCAGAACTATCCAAGTTTC  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGCAACCAGTCTATTATTTACTGGAGCCAGAACTATCCAAGTTTC  397

seq1  CTCTACACCCACCCCCTTTTTTTCCAACACAGTTGAATATGATTTTTATT  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACACCCACCCCCTTTTTTTCCAACACAGTTGAATATGATTTTTATT  447

seq1  TTCCCTCCCCTCTTAACCACTATTTAACCTTGAGTGAGCTTTTCTAATAC  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTCCCCTCTTAACCACTATTTAACCTTGAGTGAGCTTTTCTAATAC  497

seq1  TTGAAAACGTATCTTTTTCTTTTTCTTTTCCATCCTGTCACTGCATTTGA  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAACGTATCTTTTTCTTTTTCTTTTCCATCCTGTCACTGCATTTGA  547

seq1  GCAGAACCAAAGTGCTCAAACTGTACATGCCCTGGATGCCTTGACAATAA  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAACCAAAGTGCTCAAACTGTACATGCCCTGGATGCCTTGACAATAA  597

seq1  CTGAGGGACACTTCAACCTTGATTAGGAGGGCAGGACTCTTGGGAAGCTG  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGACACTTCAACCTTGATTAGGAGGGCAGGACTCTTGGGAAGCTG  647

seq1  GAAGGATTCTAACTCTTATGAATTCCGACAGCCCTTCCCAGCCTTTCACC  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGATTCTAACTCTTATGAATTCCGACAGCCCTTCCCAGCCTTTCACC  697

seq1  AAGATATACCAATCAGACTTCCTTAGAGATATGAATATTATTATTATTAT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATATACCAATCAGACTTCCTTAGAGATATGAATATTATTATTATTAT  747

seq1  GAATATTATTATTATTAGTGTTTTCTGGTTTAGTTGCAAAGGTAAAGAGT  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATTATTATTATTAGTGTTTTCTGGTTTAGTTGCAAAGGTAAAGAGT  797

seq1  TTAGTTGCAAGGATAAAGACCCAAATAACTAGTCCAAATAATGTCTGTGG  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTGCAAGGATAAAGACCCAAATAACTAGTCCAAATAATGTCTGTGG  847

seq1  AGACATCTGCCAAAAGCAGTATCTGGTACTGTACTGCCATGAGCAAACAT  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATCTGCCAAAAGCAGTATCTGGTACTGTACTGCCATGAGCAAACAT  897

seq1  CACAGAACACTTAAGCAAAGGAAAGCCACAACCTGGGACAAATTCTTCTC  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAACACTTAAGCAAAGGAAAGCCACAACCTGGGACAAATTCTTCTC  947

seq1  AGCTAGAAAATGATTCAACCTCATTTTAATGCTTGAAATTTGATGAAGCA  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGAAAATGATTCAACCTCATTTTAATGCTTGAAATTTGATGAAGCA  997

seq1  AAAGTAGAGGTTAGTTCAAAGGGGTTGATGAAAGAATTC  1024
      |||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGAGGTTAGTTCAAAGGGGTTGATGAAAGAATTC  1036