BAC Information

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BAC

Clone NameB6Ng01-009I03
Chromosome17 (Build37)
Map Location 84,990,151 - 85,035,875
singlet/doubletdoublet
Overlap genePlekhh2, Dync2li1
Upstream geneKcng3, Mta3, Haao, Zfp36l2, Thada
Downstream geneAbcg5, Abcg8, Lrpprc, LOC668848, 1110020A21Rik, Ppm1b, Slc3a1, Prepl, LOC100043901, 1700106N22Rik, EG668850, LOC383282, LOC100043902, Six3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-009I03.bB6Ng01-009I03.g
ACCDH845429DH845430
length1,072185
definitionDH845429|Mus musculus domesticus DNA, BAC clone: B6Ng01-009I03, 5' end.DH845430|Mus musculus domesticus DNA, BAC clone: B6Ng01-009I03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,034,789 - 85,035,875)(84,990,151 - 84,990,335)
sequence
gaattcatcacccaaatcctactggacacttttcccgctagcaggcttgt
aaagcacattgctggcagcgagcgcctcactcagccctggcaggagcctc
ggctctttcaagacttctctggaagcactatagtcccagctcatgggaag
aaaggggctgtggtcaccccagacactataaacctggcccctggaaaccc
gtgactctcgctcaccttaaggtgtcgactgtgattggtatgctgattaa
gtccagcaaggaggttcctccacccagttcccaaaagtgagcaatgtctt
ttggctgaaagaaagcagagggtttaaaaatattcaattttaagctttaa
gtgttttgctatactttactagcacctagcagtaataattataggtacaa
aatattcagccctcatgaaccctttcttttttcttgaaactttttccttc
ctctcttcacaccttgaaatacatcaaatgcattctacagaacaaaggag
ctgtcagagataaacgctttcctgtgaaaataaacaccaactctgtttat
acctagtagaagatactcacagtgctccccttcataaataacaatagcat
atgaaatatacactgaaataaaatttagttataattcagttgtgcacgct
cggggttctcgatggacacatgacagtgaatgagagcattctgatgtaaa
gtacaggtgctcacaaatgagtgggctgcacaggtaagacctgagcaaaa
cctaggcccaggcaagactgttccctgaggaacccaagaggctaccattg
gtgatgacagttgtggagggtgtgtgtggggtaaggctagtgtgcttttc
agttgggaagactctttcgctaagagaggattgacaaggctaagtagcca
tgcagttggacctgttgtgatcaagaccaccccctcagactgcccactgg
ggcgtcttcccaatgtagcaatgtttgagagcagcactttgtgctgtaca
aggagctgttggtgttcatcagaactcctaataaaatattaacctgaaaa
agatgtagcctgagagagattt
tgtcccctctgaccacactgccttcggaagctctgcagaccgaggccatt
aagctatttaaggtaagagtgttacttgttggcaaatcacgtgattaatc
gaatgtaatcatttgttataatgtttgatgctaagaaaattcaagctgtg
atgttggtaggatgatgatggtggtgatggtgatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_85034789_85035875
seq2: B6Ng01-009I03.b_47_1118 (reverse)

seq1  AAATCTCTTCTCAGAGCCTCACATCTTTGTCAGGTTAAATATTTTATTAT  50
      ||||||| |||||| ||   |||||||| ||||||| |||||||||||| 
seq2  AAATCTC-TCTCAG-GC--TACATCTTTTTCAGGTT-AATATTTTATTAG  45

seq1  GAGTTCTAGATGTAACACACAACAGCTCCTTGTACAGCACAAAAGTGCTT  100
      ||||||| |||| ||||| ||||||||||||||||||||| ||||||| |
seq2  GAGTTCT-GATG-AACAC-CAACAGCTCCTTGTACAGCAC-AAAGTGC-T  90

seq1  GCTCTTCAGAGCATTTGCTGACAATGGGGAGACGCCCCAGTGGGCAGTCC  150
      |||| ||| | || ||||| ||| |||| ||||||||||||||||||| |
seq2  GCTC-TCA-AACA-TTGCT-ACATTGGGAAGACGCCCCAGTGGGCAGT-C  135

seq1  TGA-GGGGTGGTCCTGGATCAC-ACAGGTTCAAACTGCATGGCTACTTAG  198
      ||| |||||||| || |||||| ||||| || ||||||||||||||||||
seq2  TGAGGGGGTGGT-CTTGATCACAACAGG-TCCAACTGCATGGCTACTTAG  183

seq1  CCTTGTCAATCCTCTCTTAGCTGAAGAGTCTTCCAAACTGAAAAGCACAC  248
      |||||||||||||||||||||  ||||||||||| |||||||||||||||
seq2  CCTTGTCAATCCTCTCTTAGCGAAAGAGTCTTCCCAACTGAAAAGCACAC  233

seq1  TAGCCTTACCCCACACACACCCTCCACAACTGTCATCACCAATGGTAGCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCTTACCCCACACACACCCTCCACAACTGTCATCACCAATGGTAGCC  283

seq1  TCTTGGGTTCCTCAGGGAACAGTCTTGCCTGGGCCTAGGTTTTGCTCAGG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGTTCCTCAGGGAACAGTCTTGCCTGGGCCTAGGTTTTGCTCAGG  333

seq1  TCTTACCTGTGCAGCCCACTCATTTGTGAGCACCTGTACTTTACATCAGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACCTGTGCAGCCCACTCATTTGTGAGCACCTGTACTTTACATCAGA  383

seq1  ATGCTCTCATTCACTGTCATGTGTCCATCGAGAACCCCGAGCGTGCACAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCTCATTCACTGTCATGTGTCCATCGAGAACCCCGAGCGTGCACAA  433

seq1  CTGAATTATAACTAAATTTTATTTCAGTGTATATTTCATATGCTATTGTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATTATAACTAAATTTTATTTCAGTGTATATTTCATATGCTATTGTT  483

seq1  ATTTATGAAGGGGAGCACTGTGAGTATCTTCTACTAGGTATAAACAGAGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGAAGGGGAGCACTGTGAGTATCTTCTACTAGGTATAAACAGAGT  533

seq1  TGGTGTTTATTTTCACAGGAAAGCGTTTATCTCTGACAGCTCCTTTGTTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTTTATTTTCACAGGAAAGCGTTTATCTCTGACAGCTCCTTTGTTC  583

seq1  TGTAGAATGCATTTGATGTATTTCAAGGTGTGAAGAGAGGAAGGAAAAAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGAATGCATTTGATGTATTTCAAGGTGTGAAGAGAGGAAGGAAAAAG  633

seq1  TTTCAAGAAAAAAGAAAGGGTTCATGAGGGCTGAATATTTTGTACCTATA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGAAAAAAGAAAGGGTTCATGAGGGCTGAATATTTTGTACCTATA  683

seq1  ATTATTACTGCTAGGTGCTAGTAAAGTATAGCAAAACACTTAAAGCTTAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTACTGCTAGGTGCTAGTAAAGTATAGCAAAACACTTAAAGCTTAA  733

seq1  AATTGAATATTTTTAAACCCTCTGCTTTCTTTCAGCCAAAAGACATTGCT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAATATTTTTAAACCCTCTGCTTTCTTTCAGCCAAAAGACATTGCT  783

seq1  CACTTTTGGGAACTGGGTGGAGGAACCTCCTTGCTGGACTTAATCAGCAT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTGGGAACTGGGTGGAGGAACCTCCTTGCTGGACTTAATCAGCAT  833

seq1  ACCAATCACAGTCGACACCTTAAGGTGAGCGAGAGTCACGGGTTTCCAGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATCACAGTCGACACCTTAAGGTGAGCGAGAGTCACGGGTTTCCAGG  883

seq1  GGCCAGGTTTATAGTGTCTGGGGTGACCACAGCCCCTTTCTTCCCATGAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAGGTTTATAGTGTCTGGGGTGACCACAGCCCCTTTCTTCCCATGAG  933

seq1  CTGGGACTATAGTGCTTCCAGAGAAGTCTTGAAAGAGCCGAGGCTCCTGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGACTATAGTGCTTCCAGAGAAGTCTTGAAAGAGCCGAGGCTCCTGC  983

seq1  CAGGGCTGAGTGAGGCGCTCGCTGCCAGCAATGTGCTTTACAAGCCTGCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTGAGTGAGGCGCTCGCTGCCAGCAATGTGCTTTACAAGCCTGCT  1033

seq1  AGCGGGAAAAGTGTCCAGTAGGATTTGGGTGATGAATTC  1087
      |||||||||||||||||||||||||||||||||||||||
seq2  AGCGGGAAAAGTGTCCAGTAGGATTTGGGTGATGAATTC  1072

seq1: chr17_84990151_84990335
seq2: B6Ng01-009I03.g_74_258

seq1  TGTCCCCTCTGACCACACTGCCTTCGGAAGCTCTGCAGACCGAGGCCATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCCTCTGACCACACTGCCTTCGGAAGCTCTGCAGACCGAGGCCATT  50

seq1  AAGCTATTTAAGGTAAGAGTGTTACTTGTTGGCAAATCACGTGATTAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTATTTAAGGTAAGAGTGTTACTTGTTGGCAAATCACGTGATTAATC  100

seq1  GAATGTAATCATTTGTTATAATGTTTGATGCTAAGAAAATTCAAGCTGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTAATCATTTGTTATAATGTTTGATGCTAAGAAAATTCAAGCTGTG  150

seq1  ATGTTGGTAGGATGATGATGGTGGTGATGGTGATG  185
      |||||||||||||||||||||||||||||||||||
seq2  ATGTTGGTAGGATGATGATGGTGGTGATGGTGATG  185