BAC Information

Click to search

BAC

Clone NameB6Ng01-010F01
Chromosome17 (Build37)
Map Location 80,165,369 - 80,166,457
singlet/doubletsinglet
Overlap genenone
Upstream geneHeatr5b, 2310002B06Rik, EG625054, Eif2ak2, 2410078J06Rik, Cebpz, 2410091C18Rik, Prkcn, LOC675425, Qpct, LOC668812, LOC383277, Cdc42ep3, LOC639964, AW061290, Cyp1b1, EG668821
Downstream geneArl6ip2, LOC625074, Hnrpll, Gpx4-ps, Galm, Sfrs7, 4930560E09Rik, Gemin6, Dhx57, Morn2, Sos1, Cdkl4, F420015M19Rik, Map4k3, LOC100043697
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010F01.g
ACCDH846018
length1,085
definitionDH846018|Mus musculus domesticus DNA, BAC clone: B6Ng01-010F01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctgtacttcagactgagtctgcccagtttctaagggtggggctaa
ggatgcgagaagggataatctttaacggtctttttagcaaagcaaagacc
cttaagcaaaaaggaatagagtagctgggtggctttagtcaaattgtttg
taattcttcatcccatagaggagatgattaaagaatattttgtcaagcag
accgtggcttcaagtcaagcaagggtaaggcttaagtccaagtccatacc
taaagaacacagtgtctcaaatgttcaggaggccatagccagatgaggct
ctctcataattcatccatccatacttgtttcagtatcaaaataacaactg
aattttcctgtagtctttgattccctctagttgcaaacctcccaaggtgg
catacctcagttcacaatgtatggccttagagcaaatagaaagatatttc
tttcctctggaaatactctaaacatgcatgttctagaaaggatgttctag
aaataaatcggatgtagtttcaatcataccatactgctaattgtcatggt
tgttatgaattgatataggggtcctcagcccactgtgggcggtaccattc
cctgatcagctgttcctaagagagccgggagcaagactttgagtgagtca
tcaaacagcataacttcatggcttcagctgtcaggctttggttgtgagtt
gagccctgtgattagaggtaaggtccccttgccctgacttttccacaaat
gatggcctgtgacatgtaagatggaataaatcccttcctcttctaagttg
ctcttgggtcagtgtttttatcacagaaacagaaaggaaaccaaacccag
acagttgtccttgttggggtgctcctaaaacaacacccactgctgaagtt
gtaagatgcttcagctgcagataaaattccagtaaagagttggctgctgc
acaccaactggccatccagattgtttcagaagccacagaccaaaagcagt
gattgctttctttcaaaggctctggagagtcgaaactccagttctggaag
cacttgctttatagtgcttggcagaggcatgcgag
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_80165369_80166457
seq2: B6Ng01-010F01.g_66_1150 (reverse)

seq1  CTCGCATGCTTCCTTGCCAAGCACCTATAAAGCAGGTGCTTCCAG-ACTG  49
      ||||||||| ||  ||||||||| |||||||||| |||||||||| ||||
seq2  CTCGCATGCCTC--TGCCAAGCA-CTATAAAGCAAGTGCTTCCAGAACTG  47

seq1  GAGTTTTCGACTCTCCAGAGCTTTTG-AAGGAAGCACTCACTGCTTTTTG  98
      ||| ||||||||||||||||| |||| ||| ||||| ||||||| |||||
seq2  GAG-TTTCGACTCTCCAGAGCCTTTGAAAGAAAGCAATCACTGC-TTTTG  95

seq1  GTCTGTGGCTTTCTGGAAACAATCTGGGATGGCCTGTTGGTGTTGCAGCA  148
      ||||||||| |||| |||||||||| |||||||| ||||||| |||||||
seq2  GTCTGTGGC-TTCT-GAAACAATCT-GGATGGCCAGTTGGTG-TGCAGCA  141

seq1  GCCAACTTCTTTTACTGGAATTTTATCTGCAGCTG-AGCATCTTACAACT  197
      |||||||   ||||||||||||||||||||||||| ||||||||||||||
seq2  GCCAACT--CTTTACTGGAATTTTATCTGCAGCTGAAGCATCTTACAACT  189

seq1  TCAGCAGTGGGTGTTGTTTTAGGAGCA-CCCAACAAGGACAACTGTCT-G  245
      ||||||||||||||||||||||||||| |||||||||||||||||||| |
seq2  TCAGCAGTGGGTGTTGTTTTAGGAGCACCCCAACAAGGACAACTGTCTGG  239

seq1  GTTTGGTTTCCTTTCTGTTTCTGTGATAAAAACACTGA-CCAAGAGCAAC  294
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  GTTTGGTTTCCTTTCTGTTTCTGTGATAAAAACACTGACCCAAGAGCAAC  289

seq1  TTAGAAGAGGAAGGGATTTATTCCATCTTACATGTCACAGGCCATCATTT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGAGGAAGGGATTTATTCCATCTTACATGTCACAGGCCATCATTT  339

seq1  GTGG-AAAGTCAGGGCAAGGGGACCTTACCTCTAATCACAGGGCTCAACT  393
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAAAAGTCAGGGCAAGGGGACCTTACCTCTAATCACAGGGCTCAACT  389

seq1  CACAACCAAAGCCTGACAGCTGAAGCCATGAAGTTATGCTGTTTGATGAC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCAAAGCCTGACAGCTGAAGCCATGAAGTTATGCTGTTTGATGAC  439

seq1  TCACTCAAAGTCTTGCTCCCGGCTCTCTTAGGAACAGCTGATCAGGGAAT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCAAAGTCTTGCTCCCGGCTCTCTTAGGAACAGCTGATCAGGGAAT  489

seq1  GGTACCGCCCACAGTGGGCTGAGGACCCCTATATCAATTCATAACAACCA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCGCCCACAGTGGGCTGAGGACCCCTATATCAATTCATAACAACCA  539

seq1  TGACAATTAGCAGTATGGTATGATTGAAACTACATCCGATTTATTTCTAG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATTAGCAGTATGGTATGATTGAAACTACATCCGATTTATTTCTAG  589

seq1  AACATCCTTTCTAGAACATGCATGTTTAGAGTATTTCCAGAGGAAAGAAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCCTTTCTAGAACATGCATGTTTAGAGTATTTCCAGAGGAAAGAAA  639

seq1  TATCTTTCTATTTGCTCTAAGGCCATACATTGTGAACTGAGGTATGCCAC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTCTATTTGCTCTAAGGCCATACATTGTGAACTGAGGTATGCCAC  689

seq1  CTTGGGAGGTTTGCAACTAGAGGGAATCAAAGACTACAGGAAAATTCAGT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGAGGTTTGCAACTAGAGGGAATCAAAGACTACAGGAAAATTCAGT  739

seq1  TGTTATTTTGATACTGAAACAAGTATGGATGGATGAATTATGAGAGAGCC  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTTTGATACTGAAACAAGTATGGATGGATGAATTATGAGAGAGCC  789

seq1  TCATCTGGCTATGGCCTCCTGAACATTTGAGACACTGTGTTCTTTAGGTA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGGCTATGGCCTCCTGAACATTTGAGACACTGTGTTCTTTAGGTA  839

seq1  TGGACTTGGACTTAAGCCTTACCCTTGCTTGACTTGAAGCCACGGTCTGC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTTGGACTTAAGCCTTACCCTTGCTTGACTTGAAGCCACGGTCTGC  889

seq1  TTGACAAAATATTCTTTAATCATCTCCTCTATGGGATGAAGAATTACAAA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACAAAATATTCTTTAATCATCTCCTCTATGGGATGAAGAATTACAAA  939

seq1  CAATTTGACTAAAGCCACCCAGCTACTCTATTCCTTTTTGCTTAAGGGTC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTGACTAAAGCCACCCAGCTACTCTATTCCTTTTTGCTTAAGGGTC  989

seq1  TTTGCTTTGCTAAAAAGACCGTTAAAGATTATCCCTTCTCGCATCCTTAG  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTTGCTAAAAAGACCGTTAAAGATTATCCCTTCTCGCATCCTTAG  1039

seq1  CCCCACCCTTAGAAACTGGGCAGACTCAGTCTGAAGTACAGAATTC  1089
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCACCCTTAGAAACTGGGCAGACTCAGTCTGAAGTACAGAATTC  1085