BAC Information

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BAC

Clone NameB6Ng01-010G24
Chromosome17 (Build37)
Map Location 36,413,225 - 36,525,880
singlet/doubletdoublet
Overlap geneH2-M10.2, H2-M10.1, H2-M10.3
Upstream geneH2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39
Downstream geneGm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94, Olfr95, Olfr96, Olfr97, Olfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99, Olfr756-ps1, Olfr101, Olfr102, Olfr103, Olfr104, GA_x5J8B7W5KGR-1115818-1115257, Olfr105, Olfr758-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-010G24.bB6Ng01-010G24.g
ACCDH846106DH846107
length1,211834
definitionDH846106|Mus musculus domesticus DNA, BAC clone: B6Ng01-010G24, 5' end.DH846107|Mus musculus domesticus DNA, BAC clone: B6Ng01-010G24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,524,677 - 36,525,880)(36,413,225 - 36,414,055)
sequence
gaattctgttagagagtatttctagtattaaataatattttacactatct
taggctttctattgctatgaagaaacattgtaatagcctcatgtacatga
ttatatgtcaatttaacagaatcaaagaaaaaaaaacaattccatagatt
tacataattaactataaactagctctcaacaatggcctaaccacagcctt
ttatatcagtggttctaaacaagtgggttgcaactgccttggcaaacctc
tgtatccaaaaagaaaaaaaaattacattgtgattaaaaaacaaatgaca
gttatgaagtagcaaaaaaggtaatatgagggttgggggtcaaacaacat
gaggaactgtattaaagtgttccagcattaggaagggtgagaagcactgc
tttggataatgcactgagtcacatatgccagcagcagtgggaaggccatt
aataagagatcagaaaacaaaacaggtgatcactagggaatcgctcaagc
ttgttccaagactcccaaaaggaaatcctcccctccaggcaaatcatagg
ctgcagaatactggaagctgacatctcagagcagcatttccaaccctggg
cccagagcctccaaccaggactgaattgtgaccagcaaggactgaactca
gagtcacatcactgcaagtgacatgaacagaggtgcttgcaaacttcaca
gaactctacaacagtcagtccagactcctctcatttacaggtagtagatc
tcattccagatagctgaataaaggacctgcctaaggaacaactatttctc
caaaatgttgaaacatgcatctgctgccacacagggttggtagagctctt
tcttcatgccccagccttatctccaaaacaatgtagtttaaattttattg
ttcctcccacaacataaaatttttaaaaagtctattcaacagcaactgat
ccctttacccagttgactacaacaaattatattatctaaacttccaagat
agcattagtggattttgattacttggaatcctcagtcactttaagggctc
ttaatgcttccaaggttttctatgggaaatgggtaggctaaattattgac
taacttcctccaaattttacgaaagaacctgttcagtgaacaatcctact
ttaaaaagaacgtactgacctacctccattcagtgtgcgagagtctcctc
tgagatgtgaa
gaattccagaatgcctgttgagcagtctttagaggagacacttcagggcc
tgggaatcctgttctatgcccttgttactgtaggagaccatcaggagacc
agcaggatccagaccaaccttgtcacaaacatgggctctctcacttgaca
gctgactttcagcaggttgtagtgacatccttgtgattgctgtgcacagg
aaagctgtgactcctgctttccgtgccttctggatgtggcactggaatga
ggcagtctgctttggtgtgggctctaatcccaatgctgacactggagcac
agggctctgtccttgttctttgtatctctgtagccatcactcccttggtg
cccttatcacttccttaggtctaatacctttcatatgtgtcccacccaga
tccatttctccagcccagacattgttcctaagtgtccctctgccaacctc
ccacctaagcaaaatattagtggacatttcagctcagtatctcctaaact
gtctgccacatcccttcctcacatatgccattggcagtctttcctttttt
cctggtggcatctctatcatttttctggcacagtctgcatccctgtataa
ttccttccttgtgctttgatagagctcattaggaagagctctaggtccat
ctacagaccaggtccacattatttccagcatctccactgcttttgctggg
aggagggactgacatttcttttttttttttttttaaaggtttatttattt
attatatgtaagtacactgtagctgtcttcagacactccagaagagggcg
ccagatctcgttatgggatgggttgtgagccacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_36524677_36525880
seq2: B6Ng01-010G24.b_45_1255 (reverse)

seq1  TTCACA--TCAGAGGAGAATCTTGCACACTGAATGGATGCTAGGTCAGTA  48
      ||||||  |||||||||| ||| |||||||||||||| | ||||||||| 
seq2  TTCACATCTCAGAGGAGACTCTCGCACACTGAATGGA-GGTAGGTCAGT-  48

seq1  AATGTTC-TTTTAAAGTATGA-TGTTCATTGACCAAGTCCTTTATGTACA  96
       | |||| |||||||||| || |||||| ||| || || ||||  ||| |
seq2  -ACGTTCTTTTTAAAGTAGGATTGTTCACTGAACAGGTTCTTT-CGTA-A  95

seq1  AATTGTGAAGAAGTCAGTCATTAATATAG-CTACCCATTTCCCATAGAAA  145
      ||||  || ||||| ||||| |||| ||| ||||||||||||||||||||
seq2  AATTTGGAGGAAGTTAGTCAATAATTTAGCCTACCCATTTCCCATAGAAA  145

seq1  ACTTTGGAAGCATTAAGAAGCCCTTAAGTTGACTGAGGATT-CAAGTAAT  194
      || |||||||||||||| |||||||||  |||||||||||| ||||||||
seq2  ACCTTGGAAGCATTAAG-AGCCCTTAAAGTGACTGAGGATTCCAAGTAAT  194

seq1  CAAAAT-CACTAATGCTATCTTGGGAGTTTAGATAATAT-ATTTGTTGTA  242
      |||||| ||||||||||||||||| |||||||||||||| ||||||||||
seq2  CAAAATCCACTAATGCTATCTTGGAAGTTTAGATAATATAATTTGTTGTA  244

seq1  GTCAACTGGGT-AAGGGATCAGTTGCTGTTGAATAGACTTTTTAAAAATT  291
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTCAACTGGGTAAAGGGATCAGTTGCTGTTGAATAGACTTTTTAAAAATT  294

seq1  TTATGTTGTGGGAGGAACAATAAAATTT-AACTACATTGTTTTGGAGATA  340
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TTATGTTGTGGGAGGAACAATAAAATTTAAACTACATTGTTTTGGAGATA  344

seq1  AGGCT-GGGCATGAAG-AAGAGCTCTACCAACCCTGTGTGGCAGCAGATG  388
      ||||| |||||||||| |||||||||||||||||||||||||||||||||
seq2  AGGCTGGGGCATGAAGAAAGAGCTCTACCAACCCTGTGTGGCAGCAGATG  394

seq1  CATG-TTCAACATTTTGGAGAAATAGTTGTTCCTTAGGCAGGTCCTTTAT  437
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTCAACATTTTGGAGAAATAGTTGTTCCTTAGGCAGGTCCTTTAT  444

seq1  TCAGCTATCTGGAATGAGATCTACTACCTGTAAATGAGAGGAGTCTGGAC  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTATCTGGAATGAGATCTACTACCTGTAAATGAGAGGAGTCTGGAC  494

seq1  TGACTGTTGTAGAGTTCTGTGAAGTTTGCAAGCACCTCTGTTCATGTCAC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGTTGTAGAGTTCTGTGAAGTTTGCAAGCACCTCTGTTCATGTCAC  544

seq1  TTGCAGTGATGTGACTCTGAGTTCAGTCCTTGCTGGTCACAATTCAGTCC  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGTGATGTGACTCTGAGTTCAGTCCTTGCTGGTCACAATTCAGTCC  594

seq1  TGGTTGGAGGCTCTGGGCCCAGGGTTGGAAATGCTGCTCTGAGATGTCAG  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGGAGGCTCTGGGCCCAGGGTTGGAAATGCTGCTCTGAGATGTCAG  644

seq1  CTTCCAGTATTCTGCAGCCTATGATTTGCCTGGAGGGGAGGATTTCCTTT  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCAGTATTCTGCAGCCTATGATTTGCCTGGAGGGGAGGATTTCCTTT  694

seq1  TGGGAGTCTTGGAACAAGCTTGAGCGATTCCCTAGTGATCACCTGTTTTG  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGTCTTGGAACAAGCTTGAGCGATTCCCTAGTGATCACCTGTTTTG  744

seq1  TTTTCTGATCTCTTATTAATGGCCTTCCCACTGCTGCTGGCATATGTGAC  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGATCTCTTATTAATGGCCTTCCCACTGCTGCTGGCATATGTGAC  794

seq1  TCAGTGCATTATCCAAAGCAGTGCTTCTCACCCTTCCTAATGCTGGAACA  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGCATTATCCAAAGCAGTGCTTCTCACCCTTCCTAATGCTGGAACA  844

seq1  CTTTAATACAGTTCCTCATGTTGTTTGACCCCCAACCCTCATATTACCTT  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATACAGTTCCTCATGTTGTTTGACCCCCAACCCTCATATTACCTT  894

seq1  TTTTGCTACTTCATAACTGTCATTTGTTTTTTAATCACAATGTAATTTTT  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTACTTCATAACTGTCATTTGTTTTTTAATCACAATGTAATTTTT  944

seq1  TTTTCTTTTTGGATACAGAGGTTTGCCAAGGCAGTTGCAACCCACTTGTT  987
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTTGGATACAGAGGTTTGCCAAGGCAGTTGCAACCCACTTGTT  994

seq1  TAGAACCACTGATATAAAAGGCTGTGGTTAGGCCATTGTTGAGAGCTAGT  1037
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACCACTGATATAAAAGGCTGTGGTTAGGCCATTGTTGAGAGCTAGT  1044

seq1  TTATAGTTAATTATGTAAATCTATGGAATTGTTTTTTTTTCTTTGATTCT  1087
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAGTTAATTATGTAAATCTATGGAATTGTTTTTTTTTCTTTGATTCT  1094

seq1  GTTAAATTGACATATAATCATGTACATGAGGCTATTACAATGTTTCTTCA  1137
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAATTGACATATAATCATGTACATGAGGCTATTACAATGTTTCTTCA  1144

seq1  TAGCAATAGAAAGCCTAAGATAGTGTAAAATATTATTTAATACTAGAAAT  1187
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAATAGAAAGCCTAAGATAGTGTAAAATATTATTTAATACTAGAAAT  1194

seq1  ACTCTCTAACAGAATTC  1204
      |||||||||||||||||
seq2  ACTCTCTAACAGAATTC  1211

seq1: chr17_36413225_36414055
seq2: B6Ng01-010G24.g_69_902

seq1  GAATTCCAGAATGCCTGTTGAGCAGTCTTTAGAGGAGACACTTCAGGGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGAATGCCTGTTGAGCAGTCTTTAGAGGAGACACTTCAGGGCC  50

seq1  TGGGAATCCTGTTCTATGCCCTTGTTACTGTAGGAGACCATCAGGAGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAATCCTGTTCTATGCCCTTGTTACTGTAGGAGACCATCAGGAGACC  100

seq1  AGCAGGATCCAGACCAACCTTGTCACAAACATGGGCTCTCTCACTTGACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGATCCAGACCAACCTTGTCACAAACATGGGCTCTCTCACTTGACA  150

seq1  GCTGACTTTCAGCAGGTTGTAGTGACATCCTTGTGATTGCTGTGCACAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACTTTCAGCAGGTTGTAGTGACATCCTTGTGATTGCTGTGCACAGG  200

seq1  AAAGCTGTGACTCCTGCTTTCCGTGCCTTCTGGATGTGGCACTGGAATGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGTGACTCCTGCTTTCCGTGCCTTCTGGATGTGGCACTGGAATGA  250

seq1  GGCAGTCTGCTTTGGTGTGGGCTCTAATCCCAATGCTGACACTGGAGCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTCTGCTTTGGTGTGGGCTCTAATCCCAATGCTGACACTGGAGCAC  300

seq1  AGGGCTCTGTCCTTGTTCTTTGTATCTCTGTAGCCATCACTCCCTTGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTCTGTCCTTGTTCTTTGTATCTCTGTAGCCATCACTCCCTTGGTG  350

seq1  CCCTTATCACTTCCTTAGGTCTAATACCTTTCATATGTGTCCCACCCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTATCACTTCCTTAGGTCTAATACCTTTCATATGTGTCCCACCCAGA  400

seq1  TCCATTTCTCCAGCCCAGACATTGTTCCTAAGTGTCCCTCTGCCAACCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTCTCCAGCCCAGACATTGTTCCTAAGTGTCCCTCTGCCAACCTC  450

seq1  CCACCTAAGCAAAATATTAGTGGACATTTCAGCTCAGTATCTCCTAAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTAAGCAAAATATTAGTGGACATTTCAGCTCAGTATCTCCTAAACT  500

seq1  GTCTGCCACATCCCTTCCTCACATATGCCATTGGCAGTCTTTCCTTTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGCCACATCCCTTCCTCACATATGCCATTGGCAGTCTTTCCTTTTTT  550

seq1  CCTGGTGGCATCTCTATCATTTTTCTGGCACAGTCTGCATCCCTGTATAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGGCATCTCTATCATTTTTCTGGCACAGTCTGCATCCCTGTATAA  600

seq1  TTCCTTCCTTGTGCTTTGATAGAGCTCATTAGGAAGAGCTCTAGGTCCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCTTGTGCTTTGATAGAGCTCATTAGGAAGAGCTCTAGGTCCAT  650

seq1  CTACAGACCAGGTCCACATTATTTCCAGCATCTCCACTGCTTTTGCTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAGACCAGGTCCACATTATTTCCAGCATCTCCACTGCTTTTGCTGGG  700

seq1  AGGAGGGACTGACATTTC-TTTTTTTTTTTTTTTAAAGGTTTATTTATTT  749
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  AGGAGGGACTGACATTTCTTTTTTTTTTTTTTTTAAAGGTTTATTTATTT  750

seq1  ATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAAGAGGGCG  800

seq1  CCAGATCTCGTTAT-GGAT-GGTTGTGAGCCACC  831
      |||||||||||||| |||| ||||||||||||||
seq2  CCAGATCTCGTTATGGGATGGGTTGTGAGCCACC  834