BAC Information

Click to search

BAC

Clone NameB6Ng01-011D19
Chromosome17 (Build37)
Map Location 26,218,768 - 26,334,392
singlet/doubletdoublet
Overlap geneDecr2, Nme4, EG666609, Tmem8, Mrpl28, Axin1, Pdia2
Upstream geneIft140, Telo2, 1110018H23Rik, Clcn7, Gm317, BC003965, Unkl, Gnptg, 0610007P22Rik, Ube2i, Prss34, Prss28, Prss29, LOC432543, LOC666472, Tpsab1, Mcpt6, Tpsg1, Cacna1h, Tekt4, Sstr5, LOC100042580, Sox8, Tmem112, LOC545396, Gng13, Chtf18, Rpusd1, BC052484, Msln, Narfl, Haghl, Ccdc78, BC008155, Metrn, Fbxl16, Wdr24, 2610003J06Rik, Stub1, Rhbdl1, Rhot2, Wdr90, 9530058B02Rik, 0610011F06Rik, Wfikkn1, Rab40c, LOC100043160, Pigq, F430201B04Rik, D630044L22Rik, Solh, 1700022N22Rik, Rab11fip3
Downstream geneArhgdig, Rgs11, Itfg3, LOC100042643, Luc7l, EG383229, EG240055, C230078M08Rik, Dusp1, EG666668, Ergic1, Atp6v0e, A930001N09Rik, Bnip1, Nkx2-5, Kifc1, Phf1, Cuta, Syngap1, Zbtb9, Bak1, Ggnbp1, Itpr3, 2900010M23Rik, Ihpk3, Lemd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011D19.bB6Ng01-011D19.g
ACCDH846676DH846677
length821818
definitionDH846676|Mus musculus domesticus DNA, BAC clone: B6Ng01-011D19, 5' end.DH846677|Mus musculus domesticus DNA, BAC clone: B6Ng01-011D19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,218,768 - 26,219,583)(26,333,578 - 26,334,392)
sequence
gaattcctcagatactgtaagcaagtttcagctatgcatgatcgggttat
tcctactcaagatgtgggcggaggagaggcagagcttgcaaagagcttga
tcccagaggcaggggagtgggctcggatttccaagtcagactcaacactt
cctgtgtgactatagacctatgcaaggcaggaggcattccccatgaagaa
cactgcctcctcaaaacaactatcttgagtacgaagtttatgtgtcagaa
gatccccgggggaggacgtacagatcagttgattctgctggttgaacctg
ctggaagccttgggtgtgatcttcaaacactgcaaaaattggcagggtgg
ctcttttgtaaaatcatcttcagctacatagtgtacatgagatcctatct
tcaaagaagaagaaggtggatatccacgggaggactcccctgggggacgg
gaggacgggagggagaggaagcttcagtcatgatgtaaagaaaattgatt
aattcattaattaatagaaaagtaatcattaatcatcactgaataaacgt
tgacctgagatgaagttataaggagaaagaagaagaacgtggaggaggag
gaagaaagagagaaaaggaaaggaaaggaaaggaaaggaaaggaaaggaa
aggaaaggaaggaaaggaaaggaaaggaaaggaaaagaaagaaaagaaaa
gaaaagaaaagaaaagaaaagaaagaaaaagaaaaagaaaaagttatatc
ctagtatgtactcctggtactctcctcactcctataggctaggataggga
aaaatggcaaattttaggctg
gaattcaacagccaggcaagtaaaggtgcaggttacagtaaggtagagta
aagggacccttaagaggtgtgaggcttggttggggtagagggaccttggg
atggatgggagccctcaaacagaggccccagtagaagtcatgagattcct
acccctccagacatcacctaagatctttgcagccaagatcctcaaccacc
tgctgctgtttgtgaaccagacactagctcaacacagggaactgctgaca
gacttcagagaggcagctcctccattcagggggcaggtactggggtctca
ggaggagggcgggatggtagggccgaatgagaccccaacttggtattact
tttggtaggtgttgttcgtaatggtggatgtggctgctgacaacagccat
gtgctgaattattttggcctcaaggctgaggaagcccccaccctgcgtct
gatcaatgttgagactaccaagaagtatgcacctacaggggtgatagcca
tcactgcagcttctgtggctgccttctgccaggcagttctccatggggaa
atcaaggtctgtagccctgagaggggaggaggaacagcagtcctaggtct
ctggctctgcacatgaccccactggaggcctgtttgcttccccagcacta
tctcctgagtcaggagatacccccctgactgggaccaggggccagtcaag
actctcgtgagcaagaattttgagcaggttgcctttgatgaaaccaagat
tgtgtttgtcaagttctgtgagtgctgaaaggggagaatggtggcttgct
gggctggggcagaggcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_26218768_26219583
seq2: B6Ng01-011D19.b_43_863

seq1  GAATTCCTCAGATACTGTAAGCAAGTTTCAGCTATGCATGATCGGGTTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCAGATACTGTAAGCAAGTTTCAGCTATGCATGATCGGGTTAT  50

seq1  TCCTACTCAAGATGTGGGCGGAGGAGAGGCAGAGCTTGCAAAGAGCTTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACTCAAGATGTGGGCGGAGGAGAGGCAGAGCTTGCAAAGAGCTTGA  100

seq1  TCCCAGAGGCAGGGGAGTGGGCTCGGATTTCCAAGTCAGACTCAACACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGAGGCAGGGGAGTGGGCTCGGATTTCCAAGTCAGACTCAACACTT  150

seq1  CCTGTGTGACTATAGACCTATGCAAGGCAGGAGGCATTCCCCATGAAGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGTGACTATAGACCTATGCAAGGCAGGAGGCATTCCCCATGAAGAA  200

seq1  CACTGCCTCCTCAAAACAACTATCTTGAGTACGAAGTTTATGTGTCAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCCTCCTCAAAACAACTATCTTGAGTACGAAGTTTATGTGTCAGAA  250

seq1  GATCCCCGGGGGAGGACGTACAGATCAGTTGATTCTGCTGGTTGAACCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCCGGGGGAGGACGTACAGATCAGTTGATTCTGCTGGTTGAACCTG  300

seq1  CTGGAAGCCTTGGGTGTGATCTTCAAACACTGCAAAAATTGGCAGGGTGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGCCTTGGGTGTGATCTTCAAACACTGCAAAAATTGGCAGGGTGG  350

seq1  CTCTTTTGTAAAATCATCTTCAGCTACATAGTGTACATGAGATCCTATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTGTAAAATCATCTTCAGCTACATAGTGTACATGAGATCCTATCT  400

seq1  TCAAAGAAGAAGAAGGTGGATATCCACGGGAGGACTCCCCTGGGGGACGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAAGAAGAAGGTGGATATCCACGGGAGGACTCCCCTGGGGGACGG  450

seq1  GAGGACGGGAGGGAGAGGAAGCTTCAGTCATGATGTAAAGAAAATTGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACGGGAGGGAGAGGAAGCTTCAGTCATGATGTAAAGAAAATTGATT  500

seq1  AATTCATTAATTAATAGAAAAGTAATCATTAATCATCACTGAATAAACGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATTAATTAATAGAAAAGTAATCATTAATCATCACTGAATAAACGT  550

seq1  TGACCTGAGATGAAGTTATAAGGAGAAAGAAGAAGAACGTGGAGGAGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTGAGATGAAGTTATAAGGAGAAAGAAGAAGAACGTGGAGGAGGAG  600

seq1  GAAGAAAGAGAGAAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAAGAGAGAAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAA  650

seq1  AGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGGAAAGAAAAGAAAAGAAA  700
      |||||||| |||||||||||||||||||||||||||  ||||||||||||
seq2  AGGAAAGG-AAGGAAAGGAAAGGAAAGGAAAGGAAAAGAAAGAAAAGAAA  699

seq1  AGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAG-AAAAGAAAAAGTTATAT  749
      |||||||||||||||||||||||||  ||||| |||||||||||||||||
seq2  AGAAAAGAAAAGAAAAGAAAAGAAAGAAAAAGAAAAAGAAAAAGTTATAT  749

seq1  CCTAGCATGTACTCCT-GTACTCT-CACACTCC-AGAGGCTAAGATAGG-  795
      ||||| |||||||||| ||||||| | |||||| | |||||| |||||| 
seq2  CCTAGTATGTACTCCTGGTACTCTCCTCACTCCTATAGGCTAGGATAGGG  799

seq1  -AAAATTGCAAATTTAAGGCTG  816
       ||||| |||||||| ||||||
seq2  AAAAATGGCAAATTTTAGGCTG  821

seq1: chr17_26333578_26334392
seq2: B6Ng01-011D19.g_69_886 (reverse)

seq1  CTGCCTCTGCCCCTG-CCAGCCTGCCACC-TTCTCCCCTTTCAGCACTCA  48
      ||||||||||||| | |||||  |||||| ||||||||||||||||||||
seq2  CTGCCTCTGCCCCAGCCCAGCAAGCCACCATTCTCCCCTTTCAGCACTCA  50

seq1  CAGAACTTGACAAACACATTCTTGGTTTCATCAAAGGCAACCTGCTCAAA  98
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CAGAACTTGACAAACACAATCTTGGTTTCATCAAAGGCAACCTGCTCAAA  100

seq1  ATTCTTGCTCACGAGAGTCTTGACTGGCCCCTGGTCCCAGTCA-GGGGGT  147
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATTCTTGCTCACGAGAGTCTTGACTGGCCCCTGGTCCCAGTCAGGGGGGT  150

seq1  ATCTCCTGACTCAGGAGATAGTGCTGGGGAAGCAAACAGGCCTCCAGTGG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCTGACTCAGGAGATAGTGCTGGGGAAGCAAACAGGCCTCCAGTGG  200

seq1  GGTCATGTGCAGAGCCAGAGACCTAGGACTGCTGTTCCTCCTCCCCTCTC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCATGTGCAGAGCCAGAGACCTAGGACTGCTGTTCCTCCTCCCCTCTC  250

seq1  AGGGCTACAGACCTTGATTTCCCCATGGAGAACTGCCTGGCAGAAGGCAG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCTACAGACCTTGATTTCCCCATGGAGAACTGCCTGGCAGAAGGCAG  300

seq1  CCACAGAAGCTGCAGTGATGGCTATCACCCCTGTAGGTGCATACTTCTTG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGAAGCTGCAGTGATGGCTATCACCCCTGTAGGTGCATACTTCTTG  350

seq1  GTAGTCTCAACATTGATCAGACGCAGGGTGGGGGCTTCCTCAGCCTTGAG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTCTCAACATTGATCAGACGCAGGGTGGGGGCTTCCTCAGCCTTGAG  400

seq1  GCCAAAATAATTCAGCACATGGCTGTTGTCAGCAGCCACATCCACCATTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAATAATTCAGCACATGGCTGTTGTCAGCAGCCACATCCACCATTA  450

seq1  CGAACAACACCTACCAAAAGTAATACCAAGTTGGGGTCTCATTCGGCCCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAACAACACCTACCAAAAGTAATACCAAGTTGGGGTCTCATTCGGCCCT  500

seq1  ACCATCCCGCCCTCCTCCTGAGACCCCAGTACCTGCCCCCTGAATGGAGG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCCCGCCCTCCTCCTGAGACCCCAGTACCTGCCCCCTGAATGGAGG  550

seq1  AGCTGCCTCTCTGAAGTCTGTCAGCAGTTCCCTGTGTTGAGCTAGTGTCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCCTCTCTGAAGTCTGTCAGCAGTTCCCTGTGTTGAGCTAGTGTCT  600

seq1  GGTTCACAAACAGCAGCAGGTGGTTGAGGATCTTGGCTGCAAAGATCTTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCACAAACAGCAGCAGGTGGTTGAGGATCTTGGCTGCAAAGATCTTA  650

seq1  GGTGATGTCTGGAGGGGTAGGAATCTCATGACTTCTACTGGGGCCTCTGT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGATGTCTGGAGGGGTAGGAATCTCATGACTTCTACTGGGGCCTCTGT  700

seq1  TTGAGGGCTCCCATCCATCCCAAGGTCCCTCTACCCCAACCAAGCCTCAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGGCTCCCATCCATCCCAAGGTCCCTCTACCCCAACCAAGCCTCAC  750

seq1  ACCTCTTAAGGGTCCCTTTACTCTACCTTACTGTAACCTGCACCTTTACT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTTAAGGGTCCCTTTACTCTACCTTACTGTAACCTGCACCTTTACT  800

seq1  TGCCTGGCTGTTGAATTC  815
      ||||||||||||||||||
seq2  TGCCTGGCTGTTGAATTC  818