BAC Information

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BAC

Clone NameB6Ng01-011H11
Chromosome17 (Build37)
Map Location 28,828,923 - 28,940,860
singlet/doubletdoublet
Overlap geneMapk14, LOC100043318, Mapk13, Brpf3
Upstream genePacsin1, Spdef, LOC100042744, D17Wsu92e, EG666682, Snrpc, F830021D11Rik, Taf11, Anks1, Tcp11, 4930526A20Rik, Scube3, LOC100042764, Zfp523, Def6, Ppard, 1810013A23Rik, Fance, Rpl10a, Tead3, Tulp1, Fkbp5, 4930511I11Rik, Gm749, Clps, Tmhs, Srpk1, Slc26a8
Downstream genePnpla1, 4930539E08Rik, Pxt1, Kctd20, Stk38, Sfrs3, LOC100042815, Cdkn1a, 9830134C10Rik, LOC100043341, Cpne5, Ppil1, BC004004, LOC100043348, Pi16, Mtch1, Fgd2, Pim1, 4933413N12Rik, Tbc1d22b, Rnf8, 1300018I05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011H11.bB6Ng01-011H11.g
ACCDH846843DH846844
length901958
definitionDH846843|Mus musculus domesticus DNA, BAC clone: B6Ng01-011H11, 5' end.DH846844|Mus musculus domesticus DNA, BAC clone: B6Ng01-011H11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,828,923 - 28,829,826)(28,939,903 - 28,940,860)
sequence
gaattctcctccgggcgtgtctgggggtgcagggggcagctggagcggga
cgtgtcctgcacccctcgccctgcatacgcaggtcgggggcgagccgtgt
gcgggagcgggtcagctgcggacgcggtgggatgcttctctaccctgcgc
tctccctgctcccaagactggccctcccgggggtcctctgctgcagcgcg
gcctcaggaccctgcctccgggtaccgccactcgggacgcgggagccctg
ccccggggagcagacgagctgggcggagctccagcgaggagctgtagggc
aaagcctgacccggggactgcggtcacctgaacgaaacttgcaagagaaa
gcgctcctttcccggaatttttttttttttccttttttctcccccttttc
ccatttttgcaagcctccatcgaaaaatcctgtctcaggaaacgttcctt
tgggattcgcacttgaattagcagcaccccgaagagcttaaaataccgac
tttatctcggggaccacggtgccagcttgcgtggtgtgtttccgattcgg
ttgaaagcgtatttccttttcggggagggagggtggcagcgccttgcaag
gacgctccagctcgccgcttagtcacataccactgctcatttcagtattg
tttgacaaaacagttttccataccgagcagaggggcgcccctcaagatca
agaaggtaggactagagctggaggtgtagatagcttttaattgaagtaat
tcatgggggtgcttttcttttttttaagtcccttagaagatttgcggagt
tttatcagcttgtaagtaccgaggtacgtggtggttttcgggagatcctg
tacataggaacgatgcttttagctttcttaacaccgggtgggggaggggg
t
gaattccaggccaggcagggatacagagtgagaacctgttatctaaataa
ataaataaataaataaataaacaaaatcacagatctaaaacatctccaga
gacatctcatggctagaagccctatctcttggccctgtccaaagtaaaga
catctgaaatgcttcagactataaataatataatatgctaggtacttccg
gcagaaggcagtacttaagataactgcaatactacttggggcatttccaa
ccacaaaccttgcaagctgggaatgcctctaagaaatcttttaaatttta
agtagtctgtctaaggtcttcattgaactcaaggacaagttgattggggg
gttatctgaggcgaattctccacctacaattaccacagaaatctctctcc
cttgatacttgtatctaatctacccagggtgcttcccccagcattctctg
cccctaaggagcagctgcaggcagttaccaaggccatcctcaccaggaag
acctaagataggatggctatactcagcatactttaacaaactacaatggc
cttttctttttaatctttctcacaactacctcaagagactgtgcagacat
catctccatttcagccacgagaaaacagaagctcagaaaaatgtgtgaat
ccagatctcctagcaagctgagaggctacaaacaccaagagtctcggaga
gctctagagagaggatgttctgcaccaacctaggttctaatcctgctcct
gtgtaacctggacaaagctttgaatttctctgcctccacagtgcatcaat
aaaacagtgtggggtggggtgtactagcacacttttccagcccagtactc
tggaggcagaggcgctattcttaagtactgccttctctgtggatttgagg
ccaagcagatctatatagtatttcagactagcaacgcacatagcgagacc
ctctaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_28828923_28829826
seq2: B6Ng01-011H11.b_42_941

seq1  GAATTCTCCTCCGGGCGTGTCTGGGGGTGCAGGGGGCAGCTGGAGCGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTCCGGGCGTGTCTGGGGGTGCAGGGGGCAGCTGGAGCGGGA  50

seq1  CGTGTCCTGCACCCCTCGCCCTGCATACGCAGGTCGGGGGCGAGCCGTGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTCCTGCACCCCTCGCCCTGCATACGCAGGTCGGGGGCGAGCCGTGT  100

seq1  GCGGGAGCGGGTCAGCTGCGGACGCGGTGGGATGCTTCTCTACCCTGCGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGGAGCGGGTCAGCTGCGGACGCGGTGGGATGCTTCTCTACCCTGCGC  150

seq1  TCTCCCTGCTCCCAAGACTGGCCCTCCCGGGGGTCCTCTGCTGCAGCGCG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTGCTCCCAAGACTGGCCCTCCCGGGGGTCCTCTGCTGCAGCGCG  200

seq1  GCCTCAGGACCCTGCCTCCGGGTACCGCCACTCGGGACGCGGGAGCCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGGACCCTGCCTCCGGGTACCGCCACTCGGGACGCGGGAGCCCTG  250

seq1  CCCCGGGGAGCAGACGAGCTGGGCGGAGCTCCAGCGAGGAGCTGTAGGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCGGGGAGCAGACGAGCTGGGCGGAGCTCCAGCGAGGAGCTGTAGGGC  300

seq1  AAAGCCTGACCCGGGGACTGCGGTCACCTGAACGAAACTTGCAAGAGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCTGACCCGGGGACTGCGGTCACCTGAACGAAACTTGCAAGAGAAA  350

seq1  GCGCTCCTTTCCCGGAATTTTTTTTTTTTTCCTTTTTTCTCCCCCTTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTCCTTTCCCGGAATTTTTTTTTTTTTCCTTTTTTCTCCCCCTTTTC  400

seq1  CCATTTTTGCAAGCCTCCATCGAAAAATCCTGTCTCAGGAAACGTTCCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTTTGCAAGCCTCCATCGAAAAATCCTGTCTCAGGAAACGTTCCTT  450

seq1  TGGGATTCGCACTTGAATTAGCAGCACCCCGAAGAGCTTAAAATACCGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTCGCACTTGAATTAGCAGCACCCCGAAGAGCTTAAAATACCGAC  500

seq1  TTTATCTCGGGGACCACGGTGCCAGCTTGCGTGGTGTGTTTCCGATTCGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTCGGGGACCACGGTGCCAGCTTGCGTGGTGTGTTTCCGATTCGG  550

seq1  TTGAAAGCGTATTTCCTTTTCGGGGAGGGAGGGTGGCAGCGCCTTGCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGCGTATTTCCTTTTCGGGGAGGGAGGGTGGCAGCGCCTTGCAAG  600

seq1  GACGCTCCAGCTCGCCGCTTAGTCACATACCACTGCTCATTTCAGTATTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCTCCAGCTCGCCGCTTAGTCACATACCACTGCTCATTTCAGTATTG  650

seq1  TTTGACAAAACAGTTTTCCATACCGAGCAGAGGGGCGCCCCTCAAGATCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACAAAACAGTTTTCCATACCGAGCAGAGGGGCGCCCCTCAAGATCA  700

seq1  AGAAGGTAGGACTAGAGCTGGAGGTGTAGATAGCTTTTAATTGAAGTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGTAGGACTAGAGCTGGAGGTGTAGATAGCTTTTAATTGAAGTAAT  750

seq1  TCATGGGGGTGCTTTTCTTTTTTTTAAGTCCCTTAGAAGATTTGCGGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGGGGTGCTTTTCTTTTTTTTAAGTCCCTTAGAAGATTTGCGGAGT  800

seq1  TTTATCAGCTTGTAAGTACCGAGGTACGTGGTGGTTTTCGGGAGATCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTTATCAGCTTGTAAGTACCGAGGTACGTGGTGGTTTTCGGGAGATCCT-  849

seq1  GAACATAGGAAACGATGCTTTTTAGCTTTCCTTAACACCGGGTGGGGGAG  900
      | ||||||| |||||||| |||||||||| ||||||||||||||||||||
seq2  GTACATAGG-AACGATGC-TTTTAGCTTT-CTTAACACCGGGTGGGGGAG  896

seq1  GGGG  904
      ||||
seq2  GGGG  900

seq1: chr17_28939903_28940860
seq2: B6Ng01-011H11.g_64_1021 (reverse)

seq1  TTTTAGAGGGTCTCGCTATGTGCGTTGCTAGTCTGAAATACTATATAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGAGGGTCTCGCTATGTGCGTTGCTAGTCTGAAATACTATATAGAT  50

seq1  CTGCTTGGCCTCAAATTCCACAGAGAAGGCAGTACTTAAGAATAGCGCCT  100
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTGCTTGGCCTCAAA-TCCACAGAGAAGGCAGTACTTAAGAATAGCGCCT  99

seq1  CTGCCTCCAGAGTACTGGGCTGG-AAAGTGTGCTAGTACACCCCACCCCA  149
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTGCCTCCAGAGTACTGGGCTGGAAAAGTGTGCTAGTACACCCCACCCCA  149

seq1  CACTGTTTTATTGATGCACTGTGGAGGCAGAGAAATTCAAAGCTTTGTCC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTTTTATTGATGCACTGTGGAGGCAGAGAAATTCAAAGCTTTGTCC  199

seq1  AGGTTACACAGGAGCAGGATTAGAACCTAGGTTGGTGCAGAACATCCTCT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTACACAGGAGCAGGATTAGAACCTAGGTTGGTGCAGAACATCCTCT  249

seq1  CTCTAGAGCTCTCCGAGACTCTTGGTGTTTGTAGCCTCTCAGCTTGCTAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGAGCTCTCCGAGACTCTTGGTGTTTGTAGCCTCTCAGCTTGCTAG  299

seq1  GAGATCTGGATTCACACATTTTTCTGAGCTTCTGTTTTCTCGTGGCTGAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATCTGGATTCACACATTTTTCTGAGCTTCTGTTTTCTCGTGGCTGAA  349

seq1  ATGGAGATGATGTCTGCACAGTCTCTTGAGGTAGTTGTGAGAAAGATTAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGATGATGTCTGCACAGTCTCTTGAGGTAGTTGTGAGAAAGATTAA  399

seq1  AAAGAAAAGGCCATTGTAGTTTGTTAAAGTATGCTGAGTATAGCCATCCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAAGGCCATTGTAGTTTGTTAAAGTATGCTGAGTATAGCCATCCT  449

seq1  ATCTTAGGTCTTCCTGGTGAGGATGGCCTTGGTAACTGCCTGCAGCTGCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTAGGTCTTCCTGGTGAGGATGGCCTTGGTAACTGCCTGCAGCTGCT  499

seq1  CCTTAGGGGCAGAGAATGCTGGGGGAAGCACCCTGGGTAGATTAGATACA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGGGGCAGAGAATGCTGGGGGAAGCACCCTGGGTAGATTAGATACA  549

seq1  AGTATCAAGGGAGAGAGATTTCTGTGGTAATTGTAGGTGGAGAATTCGCC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCAAGGGAGAGAGATTTCTGTGGTAATTGTAGGTGGAGAATTCGCC  599

seq1  TCAGATAACCCCCCAATCAACTTGTCCTTGAGTTCAATGAAGACCTTAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGATAACCCCCCAATCAACTTGTCCTTGAGTTCAATGAAGACCTTAGA  649

seq1  CAGACTACTTAAAATTTAAAAGATTTCTTAGAGGCATTCCCAGCTTGCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTACTTAAAATTTAAAAGATTTCTTAGAGGCATTCCCAGCTTGCAA  699

seq1  GGTTTGTGGTTGGAAATGCCCCAAGTAGTATTGCAGTTATCTTAAGTACT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTGGTTGGAAATGCCCCAAGTAGTATTGCAGTTATCTTAAGTACT  749

seq1  GCCTTCTGCCGGAAGTACCTAGCATATTATATTATTTATAGTCTGAAGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCTGCCGGAAGTACCTAGCATATTATATTATTTATAGTCTGAAGCA  799

seq1  TTTCAGATGTCTTTACTTTGGACAGGGCCAAGAGATAGGGCTTCTAGCCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGATGTCTTTACTTTGGACAGGGCCAAGAGATAGGGCTTCTAGCCA  849

seq1  TGAGATGTCTCTGGAGATGTTTTAGATCTGTGATTTTGTTTATTTATTTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGATGTCTCTGGAGATGTTTTAGATCTGTGATTTTGTTTATTTATTTA  899

seq1  TTTATTTATTTATTTAGATAACAGGTTCTCACTCTGTATCCCTGCCTGGC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTATTTATTTAGATAACAGGTTCTCACTCTGTATCCCTGCCTGGC  949

seq1  CTGGAATTC  958
      |||||||||
seq2  CTGGAATTC  958