BAC Information

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BAC

Clone NameB6Ng01-011K05
Chromosome17 (Build37)10 (Build37)
Map Location 36,416,160 - 36,417,39696,050,148 - 96,050,394
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneH2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39
Downstream geneH2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4, H2-M11, LOC667896, H2-M9, LOC620340, H2-M1, LOC667912, LOC100043158, LOC667915, H2-M10.5, H2-M10.6, Trim26, Trim15, Trim10, LOC100043164, Trim40, Trim31, Ppp1r11, Znrd1, 1700022C21Rik, H2-M6-ps, 2410137M14Rik, H2-M4-ps, D130003B22Rik, Zfp57, Mog, Gabbr1, Olfr90, Olfr91, Olfr92, EG224763, LOC667973, Olfr93, Olfr753-ps1, LOC630355, Ubd, Olfr94, Olfr95, Olfr96, Olfr97, Olfr754-ps1, Olfr98, H2-M3, Olfr755-ps1, Olfr99
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-011K05.bB6Ng01-011K05.g
ACCDH846964DH846965
length1,233470
definitionDH846964|Mus musculus domesticus DNA, BAC clone: B6Ng01-011K05, 5' end.DH846965|Mus musculus domesticus DNA, BAC clone: B6Ng01-011K05, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(36,416,160 - 36,417,396)(96,050,148 - 96,050,394)
sequence
gaattctctacacagtttgaagataggccttacagtatttatcagtgcat
tggttctatggtacaaacagagaggaacagaagacactgacgtcatggtg
taattgagagacaccgtctccctaggcatctcccttccagagtctggaag
ggcctcatgtgcacagaggaaatggcaggtgcttgctgtagacgtgattg
atcagagatgcccaagggaagcatggggtctggagtgatggtacaggcct
gagattctgacatttgtttggggactgaatgggaggatcacttaagctca
gaaacttagctcaacctatataaaaagagccccatctccaagaggaaaaa
gaggaacaatgaaggaaggagacagatgtgacgggacacatacacactga
ggcaggagcttcagctattcaagtccaaactcggttatagactcgagcta
caaataaataagagaaaaattaaagaaaaaaattaaatgaggtggccagg
ttgatggtctaaaaatactgaagatgaaactagagagctgcaaggagtgg
catcaaattaatgacacttaaagccatttcaattcatgaaagctaaataa
aatgttggttacaggagagaaaaacagtgctgactgagctctgtgctcca
aaacaagtggtctgattagatcagaggtggctgcaccattctggtgtcat
gccaacgacagcaaaaacaacaggagttgcacaagaaacatgaaagccat
ctttcgatgaggagaaggtataggttagaggagggaaatcaaagggaaat
aacagcatggaaaaagaaatgagaaagggaaaggaaaacaaagaaaaata
tgaaagagtaaaaagaaaagtttggtaatcctagacttgagaggcaaagg
caggcagatttttgagttcgaggccagcctgatctacagagtgagttcca
ggacaagcagggctacaagagaaatcctggtcttaaaaacaacaaacaaa
ccaaccaaatcaaaaaaaaaagactagaagtggagagagttgaaagaaga
gggagaagaaatccgaacctgttgtggtgtcttagagaaagaggaccgaa
cttctattcgttcttaattgggccatctattcgttcaggtgaacatagga
gttccaatggtgccaatcagcccaaggtcaggcagccaacggcttccatg
tgaaattgcatgcgcacgtgaaccagaggagtt
caagcccaaggtcttgctaaggacgaactaggactgttggaacactggcg
gatggctttagctatgtcagaattcaatcttaaaaggcacttatgatagg
aaaatattgaaagagagcacgtggatccatacactagactaacgcgggaa
tggaacgcgggaatgaaaaattactgtatgggtagggaacgctagactcc
aggaggagagcttccttgaaagtcttttgcctcatgagtgacttttaagc
ctctcggcttgtccagttgactcgaccagagagcgtagcatcctatggag
ttggagcttttgttttttatggagataaggtctggttgtggttgaggcta
gtctcaaactcccaagctccagtgctagtcttaccttagcctctctctct
ctctctctctctctctctctctctctcaaaaaaatagtgtctgtgtgcgg
acattttctttttttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_36416160_36417396
seq2: B6Ng01-011K05.b_47_1279 (reverse)

seq1  AACT-CACTGGTTCA-GTGCGC-TGCATTTCCAATCGAAAGCGGTTGGCT  47
      |||| | |||||||| |||||| |||| || ||   | |||| |||||||
seq2  AACTCCTCTGGTTCACGTGCGCATGCAATTTCACATGGAAGCCGTTGGCT  50

seq1  GCACTGTAACACTGAGCTGATATTGCACCAATGGGATCATCTTTTGTCTT  97
      || |||  ||  || |||||| | |||||| ||| |   || | ||| | 
seq2  GC-CTG--ACCTTGGGCTGAT-TGGCACCATTGGAA--CTCCTATGT-TC  93

seq1  TCTTGAACGAATAGAT-GCCCAATCTAGAACGAATAGATGTCTGTTCCTC  146
       | ||||||||||||| |||||||  |||||||||||| ||  | |||||
seq2  ACCTGAACGAATAGATGGCCCAATTAAGAACGAATAGAAGTTCGGTCCTC  143

seq1  TTTTCTC-AAGACA-CACAACA-GTTC-GATTTCTTTCTCCTCTTCTTTC  192
       |||||| |||||| ||||||| |||| ||||||||   |||||||||||
seq2  -TTTCTCTAAGACACCACAACAGGTTCGGATTTCTTCTCCCTCTTCTTTC  192

seq1  TACTCTTCTTCACTTCTAGTCTTTTTTTTTTGTTTTTGTTTGTTTGTTTG  242
       |||| ||| |||||||||||||||||||||| ||| ||| |||||||||
seq2  AACTC-TCTCCACTTCTAGTCTTTTTTTTTTGATTTGGTTGGTTTGTTTG  241

seq1  TTTGTTTTTTAGA-CAGGATTTCTCTGTGTAGCCCTGCCTGTCCTGGAAC  291
       |||||||| ||| |||||||||||| ||||||||||| |||||||||||
seq2  -TTGTTTTTAAGACCAGGATTTCTCT-TGTAGCCCTGCTTGTCCTGGAAC  289

seq1  TCACTCTGTAGATCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTTTG  341
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TCACTCTGTAGATCAGGCTGGCCTCGAACTCAAAAATCTGCCTGCCTTTG  339

seq1  CCTCTCAAGTGCTAGGATTACCAAACTTTTCTTTTTTACTCTTTCATATT  391
      |||||||||| |||||||||||||||||||| ||||||||||||||||||
seq2  CCTCTCAAGT-CTAGGATTACCAAACTTTTC-TTTTTACTCTTTCATATT  387

seq1  TTTCTTTGTTTTCCTTTCCCTTTCTCATTTCTTTTTCCATGCTGTTATTT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGTTTTCCTTTCCCTTTCTCATTTCTTTTTCCATGCTGTTATTT  437

seq1  CCCTTTGATTTCCCTCCTCTAACCTATACCTTCTCCTCATCGAAAGATGG  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTGATTTCCCTCCTCTAACCTATACCTTCTCCTCATCGAAAGATGG  487

seq1  CTTTCATGTTTCTTGTGCAACTCCTGTTGTTTTTGCTGTCGTTGGCATGA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATGTTTCTTGTGCAACTCCTGTTGTTTTTGCTGTCGTTGGCATGA  537

seq1  CACCAGAATGGTGCAGCCACCTCTGATCTAATCAGACCACTTGTTTTGGA  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAGAATGGTGCAGCCACCTCTGATCTAATCAGACCACTTGTTTTGGA  587

seq1  GCACAGAGCTCAGTCAGCACTGTTTTTCTCTCCTGTAACCAACATTTTAT  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGAGCTCAGTCAGCACTGTTTTTCTCTCCTGTAACCAACATTTTAT  637

seq1  TTAGCTTTCATGAATTGAAATGGCTTTAAGTGTCATTAATTTGATGCCAC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTTTCATGAATTGAAATGGCTTTAAGTGTCATTAATTTGATGCCAC  687

seq1  TCCTTGCAGCTCTCTAGTTTCATCTTCAGTATTTTTAGACCATCAACCTG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGCAGCTCTCTAGTTTCATCTTCAGTATTTTTAGACCATCAACCTG  737

seq1  GCCACCTCATTTAATTTTTTTCTTTAATTTTTCTCTTATTTATTTGTAGC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCTCATTTAATTTTTTTCTTTAATTTTTCTCTTATTTATTTGTAGC  787

seq1  TCGAGTCTATAACCGAGTTTGGACTTGAATAGCTGAAGCTCCTGCCTCAG  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAGTCTATAACCGAGTTTGGACTTGAATAGCTGAAGCTCCTGCCTCAG  837

seq1  TGTGTATGTGTCCCGTCACATCTGTCTCCTTCCTTCATTGTTCCTCTTTT  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATGTGTCCCGTCACATCTGTCTCCTTCCTTCATTGTTCCTCTTTT  887

seq1  TCCTCTTGGAGATGGGGCTCTTTTTATATAGGTTGAGCTAAGTTTCTGAG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTGGAGATGGGGCTCTTTTTATATAGGTTGAGCTAAGTTTCTGAG  937

seq1  CTTAAGTGATCCTCCCATTCAGTCCCCAAACAAATGTCAGAATCTCAGGC  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGTGATCCTCCCATTCAGTCCCCAAACAAATGTCAGAATCTCAGGC  987

seq1  CTGTACCATCACTCCAGACCCCATGCTTCCCTTGGGCATCTCTGATCAAT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACCATCACTCCAGACCCCATGCTTCCCTTGGGCATCTCTGATCAAT  1037

seq1  CACGTCTACAGCAAGCACCTGCCATTTCCTCTGTGCACATGAGGCCCTTC  1091
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTCTACAGCAAGCACCTGCCATTTCCTCTGTGCACATGAGGCCCTTC  1087

seq1  CAGACTCTGGAAGGGAGATGCCTAGGGAGACGGTGTCTCTCAATTACACC  1141
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCTGGAAGGGAGATGCCTAGGGAGACGGTGTCTCTCAATTACACC  1137

seq1  ATGACGTCAGTGTCTTCTGTTCCTCTCTGTTTGTACCATAGAACCAATGC  1191
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACGTCAGTGTCTTCTGTTCCTCTCTGTTTGTACCATAGAACCAATGC  1187

seq1  ACTGATAAATACTGTAAGGCCTATCTTCAAACTGTGTAGAGAATTC  1237
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATAAATACTGTAAGGCCTATCTTCAAACTGTGTAGAGAATTC  1233

seq1: chr10_96050148_96050394
seq2: B6Ng01-011K05.g_461_540 (reverse)

seq1  AAAAAAAAAAAAGAGGATGGGCTGGAGAGTTGGTACCATGGTTAAAAGCA  50
                                                        
seq2  --------------------------------------------------  0

seq1  TGCTCCTCTTATAGAGGGTACAAGTTCAGTTTCCAGCACTGTATAGGGTG  100
                                                        
seq2  --------------------------------------------------  0

seq1  GCTCACAAGTGCCTGTGAATCCCCAGGGTATCTGATGCCTCTGGTATCTG  150
                                                        
seq2  --------------------------------------------------  0

seq1  TGACACCTGCATTCATACACACATACACACACAGACACACACACACACAC  200
                      | | | | | | | |  | | | |||||| ||||
seq2  ---------------AAAAAAAAAAAAGAAAATGTC-CGCACACAGACAC  34

seq1  --------AGAGAGAGAGAGAGAGAGCGCACACACAGAGAGAGAGAGAGA  242
               |||||||||||||||||         |||||||||||||||
seq2  TATTTTTTTGAGAGAGAGAGAGAGAG---------AGAGAGAGAGAGAGA  75

seq1  GAGAG  247
      |||||
seq2  GAGAG  80