BAC Information

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BAC

Clone NameB6Ng01-012L01
Chromosome17 (Build37)
Map Location 87,369,390 - 87,503,950
singlet/doubletdoublet
Overlap geneRhoq, Pigf, Cript, EG433144
Upstream geneSrbd1, LOC545228, Prkce, Epas1, 1700090G07Rik, Atp6v1e2
Downstream geneSocs5, Mcfd2, Ttc7, 1700011E24Rik, Calm2, LOC100043727, Tacstd1, Msh2, Kcnk12, LOC626888, LOC668863, EG626920, Msh6, Fbxo11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-012L01.bB6Ng01-012L01.g
ACCDH847712DH847713
length1,1481,136
definitionDH847712|Mus musculus domesticus DNA, BAC clone: B6Ng01-012L01, 5' end.DH847713|Mus musculus domesticus DNA, BAC clone: B6Ng01-012L01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,369,390 - 87,370,544)(87,502,364 - 87,503,950)
sequence
gaattctttctcattggctctccactcgctcagctaaaggctctccggtg
gctaagagcaccaggtacagctccttccctggtgtttcagctgtcatccg
tcagaggatagtgacgcaggcatgtggatggcgcatccaactaccaatct
tgtctctgacttggctcactaggcttaaccgttaccacgctccggccttt
gcatcctcaaggtcccctggtcacgaggtagtttggatgatgggttttgg
cttctgctgctgaacagcacaccttgtctgtatttccctgtggctacgat
cagtccactggccagctcttcccacagcctctttccttccctatgtgatg
ggagacagtgtctaccttgcaggttggctgcacgggttgggaattacgta
gagttggttacctcactctagggagtgccatacctgctgggttctggtga
tgtggtctggtgcctgctctgtgacccagccttctgtgggggagaggaag
gtgatgagaccctgggaagtgcattgcacagctgggaggatgaaggagag
gagagcagctgcagggtccccgagggtgagggctgctgctttggctgata
cagagaaaggcaggaggcagaagagcagtgccggccaccctggccatctt
gctggctgtggccatctccctgcctgtggccatctcgctggccatctccc
tgcctgtggccacctccctggctgtggccatctccctggccacctccctg
gctgtggccatctcgctggctgtggccatctccctggttgtggccatctc
gctggctgtggccatctccctggctgtggccatctccctggctgtggcca
tctccctggctgtggccatctcgctggctgtggccatctcgttggctgtg
gccatctccctggctgtggccatctccctggctgtggccatctcactggc
tgtggccatctccctggctgtggagtcctggctctgctgcttcccgccag
aagctcccctctcccaaactgatgttccccatccaccttgataagggtta
tgactggtacctcctgtaggttggggggcaagtcaaacctttctgtctgc
caccagaggaattccctcctgggcagcggcctattctctgtgctgcca
gaattccatgatgttgtactccacgcatgacagcatttgcttcatgtgta
ctccttactcggcagtgccaagcacacgtggtcaatttagaagtaccctt
tgtttcacatggcaagcctcaaacccgaagaactgtgggtgcattgccag
gacaggccctgcaggaggtctcagtggccacttcactttgtgtttccaag
cccttgggtattgcaccccaacagggaacaagctgttgccagttccatca
tagtctttgtaattaaatccaagtctggcagagggcagtgcataattatg
aagtattattatggtttttatcattattaggcacccagctgcccagccca
ggaaaccacagtagtaaaacactgagaaccgagctcctctcccagctggc
atgaataaataccaggtgtattggcacagagctttgcagctccacactca
acgagatgagaccttctgtcccctcctcttggggagatccaattttgaat
gaatggagaaaggaaatacaaacacagacctttgccatcacccctgaatc
aaattcatttttctacatctcccgagaacagtttcttctcatctgcatat
ttattgcataaatcttttccaactttatccttgacctgtacacttcctga
acattattctccaaatctcctgagagcgtgtgggatttgtgagggcttgc
gaggggtacaaagaagggatgcccagaaagcacagccgtgtgtgcagtga
gctcctcctcctcctcctccatgtgtgcagtgagctcctcccccatgtgt
gcagtgagctcctcccccatgtgtgctgtgagctcctcctcccccatgtg
tgcagcgagcaactcctcctccttgtgtgctgtgagctcctcccccatgt
gtgcagcgagctcctcccccatttgtgcagtgagcttctcctcctctcca
tgtgtgcagtgagctcctccccatgtatgcagcaagctcctccccatggt
gtgcagtgagcttctctctctcatgtgtacagtgagctcctccccatgtg
tgcagtgagctcttcccaatgtgtggcagtggagctcctcccaatgtgtg
cagtgagctcctcccatgtgttacagtgacttctcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_87369390_87370544
seq2: B6Ng01-012L01.b_46_1193

seq1  GAATTCTTTCTCATTGGCTCTCCACTCGCTCAGCTAAAGGCTCTCCGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTCATTGGCTCTCCACTCGCTCAGCTAAAGGCTCTCCGGTG  50

seq1  GCTAAGAGCACCAGGTACAGCTCCTTCCCTGGTGTTTCAGCTGTCATCCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGAGCACCAGGTACAGCTCCTTCCCTGGTGTTTCAGCTGTCATCCG  100

seq1  TCAGAGGATAGTGACGCAGGCATGTGGATGGCGCATCCAACTACCAATCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGATAGTGACGCAGGCATGTGGATGGCGCATCCAACTACCAATCT  150

seq1  TGTCTCTGACTTGGCTCACTAGGCTTAACCGTTACCACGCTCCGGCCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTGACTTGGCTCACTAGGCTTAACCGTTACCACGCTCCGGCCTTT  200

seq1  GCATCCTCAAGGTCCCCTGGTCACGAGGTAGTTTGGATGATGGGTTTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTCAAGGTCCCCTGGTCACGAGGTAGTTTGGATGATGGGTTTTGG  250

seq1  CTTCTGCTGCTGAACAGCACACCTTGTCTGTATTTCCCTGTGGCTACGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCTGCTGAACAGCACACCTTGTCTGTATTTCCCTGTGGCTACGAT  300

seq1  CAGTCCACTGGCCAGCTCTTCCCACAGCCTCTTTCCTTCCCTATGTGATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCACTGGCCAGCTCTTCCCACAGCCTCTTTCCTTCCCTATGTGATG  350

seq1  GGAGACAGTGTCTACCTTGCAGGTTGGCTGCACGGGTTGGGAATTACGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACAGTGTCTACCTTGCAGGTTGGCTGCACGGGTTGGGAATTACGTA  400

seq1  GAGTTGGTTACCTCACTCTAGGGAGTGCCATACCTGCTGGGTTCTGGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGGTTACCTCACTCTAGGGAGTGCCATACCTGCTGGGTTCTGGTGA  450

seq1  TGTGGTCTGGTGCCTGCTCTGTGACCCAGCCTTCTGTGGGGGAGAGGAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTCTGGTGCCTGCTCTGTGACCCAGCCTTCTGTGGGGGAGAGGAAG  500

seq1  GTGATGAGACCCTGGGAAGTGCATTGCACAGCTGGGAGGATGAAGGAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGAGACCCTGGGAAGTGCATTGCACAGCTGGGAGGATGAAGGAGAG  550

seq1  GAGAGCAGCTGCAGGGTCCCCGAGGGTGAGGGCTGCTGCTTTGGCTGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGCAGCTGCAGGGTCCCCGAGGGTGAGGGCTGCTGCTTTGGCTGATA  600

seq1  CAGAGAAAGGCAGGAGGCAGAAGAGCAGTGCCGGCCACCCTGGCCATCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAAGGCAGGAGGCAGAAGAGCAGTGCCGGCCACCCTGGCCATCTT  650

seq1  GCTGGCTGTGGCCATCTCCCTGCCTGTGGCCATCTCGCTGGCCATCTCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTGTGGCCATCTCCCTGCCTGTGGCCATCTCGCTGGCCATCTCCC  700

seq1  TGCCTGTGGCCACCTCCCTGGCTGTGGCCATCTCCCTGGCCACCTCCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTGGCCACCTCCCTGGCTGTGGCCATCTCCCTGGCCACCTCCCTG  750

seq1  GCTGTGGCCATCTCGCTGGCTGTGGCCATCTCCCTGGTTGTGGCCATCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGGCCATCTCGCTGGCTGTGGCCATCTCCCTGGTTGTGGCCATCTC  800

seq1  GCTGGCTGTGGCCATCTCCCTGGCTGTGGCCATCTCCCTGGCTGTGGCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCTGTGGCCATCTCCCTGGCTGTGGCCATCTCCCTGGCTGTGGCCA  850

seq1  TCTCCCTGGCTGTGGCCATCTCGCTGGCTGTGGCCATCTCGTTGGCTGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTGGCTGTGGCCATCTCGCTGGCTGTGGCCATCTCGTTGGCTGTG  900

seq1  GCCATCTCCCTGGCTGTGGCCATCTCCCTGGCTGTGGCCATCTCACTGGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATCTCCCTGGCTGTGGCCATCTCCCTGGCTGTGGCCATCTCACTGGC  950

seq1  TGTGGCCATCTCCCTGGCTGTGGAGTCCTGGCTCTGCTGCTTCCCGCCAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCATCTCCCTGGCTGTGGAGTCCTGGCTCTGCTGCTTCCCGCCAG  1000

seq1  AAAGCTCCCCTCTCCCAAACTGATG-TCCACATCCA-CATGAT-AGGGTT  1047
       |||||||||||||||||||||||| ||| |||||| | |||| ||||||
seq2  -AAGCTCCCCTCTCCCAAACTGATGTTCCCCATCCACCTTGATAAGGGTT  1049

seq1  ATGACT-GTACCTTCTGGTAGGGTTTGGGGGCCAAGTCAGAACTTCCTGT  1096
      |||||| |||||| || |||||  ||||||| ||||||| | ||| ||||
seq2  ATGACTGGTACCTCCT-GTAGG--TTGGGGGGCAAGTCAAACCTTTCTGT  1096

seq1  CTGCCAGCAGAGGAATCTCCTCCCCTGGGCACAGCGGCTCCTTTCTCTCT  1146
      |||||| |||||||||  |||  ||||||  ||||||  ||| | |||||
seq2  CTGCCACCAGAGGAATTCCCT--CCTGGG--CAGCGG--CCTAT-TCTCT  1139

seq1  GTGCTGCCA  1155
      |||||||||
seq2  GTGCTGCCA  1148

seq1: chr17_87502364_87503950
seq2: B6Ng01-012L01.g_67_1202 (reverse)

seq1  GGAGAAGTCACTTTGAGTAATCACCAACTTTTTGAGTTTCTTTTGGGATC  50
                                                        
seq2  --------------------------------------------------  0

seq1  TCAGCTCTGTCATTTACTAAGTCTTTGTGACCTTGAAAGAAGTAGGGATG  100
                                                        
seq2  --------------------------------------------------  0

seq1  TGAAAGCTATCCCAGAGGGTGTTGCAGATGGAGTCAGCTACCGTGAGTGC  150
                                                        
seq2  --------------------------------------------------  0

seq1  AAATACCAAGCACAGCACTGAGGAGGAGCTCACTGCACATATGGGGAAGG  200
                                                        
seq2  --------------------------------------------------  0

seq1  AGCTCGCTGCACACATGGGGGAGGAGCTCGATGCACACATGGGGGAGGAG  250
                                                        
seq2  --------------------------------------------------  0

seq1  CTCACAGAACACATTGGGGAGGAGCTCACTGCACACATGGAGGAGGAGGA  300
                                                        
seq2  --------------------------------------------------  0

seq1  GCTCAGCACATATAGGGGAGGAGCTCGCTGCATACATGGGGGAGGAGCTC  350
                                                        
seq2  --------------------------------------------------  0

seq1  ACTGCACACATGGAGGAGGAGGAGCTCACAGCACACATGGGGGAGGAGCT  400
                                                        
seq2  --------------------------------------------------  0

seq1  CACTGCACACACGGAGGAGGAGGAGCTCACAGCACATATAGGGGAGGAGC  450
                                                |||| || 
seq2  ------------------------------------------GGAGAAG-  7

seq1  TCACTGT-ACACATGGGGGAGGAGCTCACTGCACACATGGGGGAGGAGCT  499
      ||||||| ||||||  ||||||||||||||||||||||  ||||||||||
seq2  TCACTGTAACACAT--GGGAGGAGCTCACTGCACACAT-TGGGAGGAGCT  54

seq1  -CACTG-CACACATGGGGGAGGAGCTCACTGCACACATGGGGGAGGAGCT  547
       ||||| |||||||  |||| ||||||||||||||||| |||||||||||
seq2  CCACTGCCACACAT-TGGGAAGAGCTCACTGCACACAT-GGGGAGGAGCT  102

seq1  CACTGTACACATGGAGGAGGAGGAGGAGCTCACTGCACACATGGGGGAGG  597
      ||||||||||||    |||   ||| ||||||||||||||   |||||||
seq2  CACTGTACACAT----GAGAGAGAGAAGCTCACTGCACACCATGGGGAGG  148

seq1  AGCTTGCTGCATACATGGGGGAGGAGCTCACTGCACACATGGAGGAGGAG  647
      |||||||||||||||| |||||||||||||||||||||||||| ||||||
seq2  AGCTTGCTGCATACAT-GGGGAGGAGCTCACTGCACACATGGA-GAGGAG  196

seq1  GAGAAGCTCACTGCACAAATGGGGGAGGAGCTCGCTGCACACATGGGGGA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGCTCACTGCACAAATGGGGGAGGAGCTCGCTGCACACATGGGGGA  246

seq1  GGAGCTCACAGCACACAAGGAGGAGGAGTTGCTCGCTGCACACATGGGGG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTCACAGCACACAAGGAGGAGGAGTTGCTCGCTGCACACATGGGGG  296

seq1  AGGAGGAGCTCACAGCACACATGGGGGAGGAGCTCACTGCACACATGGGG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAGCTCACAGCACACATGGGGGAGGAGCTCACTGCACACATGGGG  346

seq1  GAGGAGCTCACTGCACACATGGAGGAGGAGGAGGAGGAGCTCACTGCACA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGCTCACTGCACACATGGAGGAGGAGGAGGAGGAGCTCACTGCACA  396

seq1  CACGGCTGTGCTTTCTGGGCATCCCTTCTTTGTACCCCTCGCAAGCCCTC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGGCTGTGCTTTCTGGGCATCCCTTCTTTGTACCCCTCGCAAGCCCTC  446

seq1  ACAAATCCCACACGCTCTCAGGAGATTTGGAGAATAATGTTCAGGAAGTG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCCCACACGCTCTCAGGAGATTTGGAGAATAATGTTCAGGAAGTG  496

seq1  TACAGGTCAAGGATAAAGTTGGAAAAGATTTATGCAATAAATATGCAGAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGTCAAGGATAAAGTTGGAAAAGATTTATGCAATAAATATGCAGAT  546

seq1  GAGAAGAAACTGTTCTCGGGAGATGTAGAAAAATGAATTTGATTCAGGGG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAAACTGTTCTCGGGAGATGTAGAAAAATGAATTTGATTCAGGGG  596

seq1  TGATGGCAAAGGTCTGTGTTTGTATTTCCTTTCTCCATTCATTCAAAATT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGGCAAAGGTCTGTGTTTGTATTTCCTTTCTCCATTCATTCAAAATT  646

seq1  GGATCTCCCCAAGAGGAGGGGACAGAAGGTCTCATCTCGTTGAGTGTGGA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCTCCCCAAGAGGAGGGGACAGAAGGTCTCATCTCGTTGAGTGTGGA  696

seq1  GCTGCAAAGCTCTGTGCCAATACACCTGGTATTTATTCATGCCAGCTGGG  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAAAGCTCTGTGCCAATACACCTGGTATTTATTCATGCCAGCTGGG  746

seq1  AGAGGAGCTCGGTTCTCAGTGTTTTACTACTGTGGTTTCCTGGGCTGGGC  1247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGCTCGGTTCTCAGTGTTTTACTACTGTGGTTTCCTGGGCTGGGC  796

seq1  AGCTGGGTGCCTAATAATGATAAAAACCATAATAATACTTCATAATTATG  1297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGGGTGCCTAATAATGATAAAAACCATAATAATACTTCATAATTATG  846

seq1  CACTGCCCTCTGCCAGACTTGGATTTAATTACAAAGACTATGATGGAACT  1347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCCCTCTGCCAGACTTGGATTTAATTACAAAGACTATGATGGAACT  896

seq1  GGCAACAGCTTGTTCCCTGTTGGGGTGCAATACCCAAGGGCTTGGAAACA  1397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACAGCTTGTTCCCTGTTGGGGTGCAATACCCAAGGGCTTGGAAACA  946

seq1  CAAAGTGAAGTGGCCACTGAGACCTCCTGCAGGGCCTGTCCTGGCAATGC  1447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGTGAAGTGGCCACTGAGACCTCCTGCAGGGCCTGTCCTGGCAATGC  996

seq1  ACCCACAGTTCTTCGGGTTTGAGGCTTGCCATGTGAAACAAAGGGTACTT  1497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCACAGTTCTTCGGGTTTGAGGCTTGCCATGTGAAACAAAGGGTACTT  1046

seq1  CTAAATTGACCACGTGTGCTTGGCACTGCCGAGTAAGGAGTACACATGAA  1547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATTGACCACGTGTGCTTGGCACTGCCGAGTAAGGAGTACACATGAA  1096

seq1  GCAAATGCTGTCATGCGTGGAGTACAACATCATGGAATTC  1587
      ||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATGCTGTCATGCGTGGAGTACAACATCATGGAATTC  1136