BAC Information

Click to search

BAC

Clone NameB6Ng01-013M18
Chromosome17 (Build37)
Map Location 74,700,711 - 74,816,172
singlet/doubletdoublet
Overlap gene2810410M20Rik, LOC668773, LOC668775, Spast, Slc30a6
Upstream geneCapn13, LOC100043666, Galnt14, Ehd3, LOC240160, Xdh, Srd5a2, Memo1, EG668716
Downstream geneNlrc4, LOC100043883, LOC624159, Yipf4, Birc6, Ttc27, LOC100043672, Ltbp1, EG621988
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-013M18.bB6Ng01-013M18.g
ACCDH848523DH848524
length6261,158
definitionDH848523|Mus musculus domesticus DNA, BAC clone: B6Ng01-013M18, 5' end.DH848524|Mus musculus domesticus DNA, BAC clone: B6Ng01-013M18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,700,711 - 74,701,332)(74,815,017 - 74,816,172)
sequence
tttaatgtagtaaatctgaggctagcctgggctacacagagacacattca
gaggcagagaggaaaaggaaaagaaggcaaaaagacaggccagacatagt
agcagatccctgaagtctcacgactgggaagccagaggcagagagatctc
ttgggttctctaccagtctggtctacatggcaaattgcaggccagccaag
ggcgcaagaagaggcttcgctcacaaaggcagggcgaggggaggagagga
aggcaggtgagtgagcaaacagagaactgttgtaccgttgtaacaaacca
cagtcccttgggctgggcatggcggtacacaccttttttggaggtagggg
atttattagccagttggatggtagcacttgcctttaattccagcactcgg
gaggcagaggcagaggatcaatgactttgaggccagcctggtccacagag
tttcaggatggccaaagctacacaggaaaaaaacttatttagccgggcgt
ggtggcgcacacctttaatcccagccctttgcgaggcagaggcatgtaga
tttctgagttcaaggccagcctgggtctacagagtgagtttccaggatag
ccagggctatacagaagaaaccctgt
gaattccaggacagtgaaggcaatgatgaaagcatgtctcaaaaaaaaat
cgaaagccaacaacaaaaaaagaatgcttactgcctctgtagaggagcag
agtttggtacccagcatccacacagagactcacaactgtctataattcca
gttccaggatatctgagttctctcctgacacccgagaactctccctgcac
aaggcacacatacagacactcaagcacacacacatataataaaatagcag
gccgggcaagggggcttacagttttaatgctagcaccattgtgggagaga
agaggccagcctggactacacagtgaaacactgtctcaaaaagaaaaaag
ataaataaatgaataaagaaagtgaaataaaaaaataaataaaatgaagt
aaaaaagaaccaaccaacaaattaaacaaaaagtatataagaaatagaaa
agcaacatttcatttagtgtatagtactacataaggactatgttgtcagg
ctgggcggtggtggcgtacgcctttaatcccagcacttgggaggcagagg
caggcaggtttctgggttttgaggccagcctggtctacagagtgagttcc
aggacagccaaggttacacagagacagagaaaccctgtctcgaaaaacaa
aacaaaacaaaacaaaacaaaaaggattaccttgtctttattactaagag
caggatgtacacgcacctaattctggaaaccctgtttatattactttaat
acccttattgtcactacgatgatcaatgacagggggaaaaagcaatagaa
aacagaccagagcgtattacccaaagaaatgaaatatccaaaaaaagtta
aatagcattatttccatttaaaacatgactagaacaaacaaatataaatt
tatgattgcatgtacaggacatatacgagtataggcttaagtaatcacat
ggcataaattcccacccatttctgctaagtggagcttcagaggaacactg
tctgactcactgctaaggccgcgctttatctgcttgaagacaccagcatt
gctgggacgaaccggttacgtattgaacagcaacctcggtgatcacaaga
agctcaccctggagaagagcacattcccaggtacacactctagggggtac
ctatggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_74700711_74701332
seq2: B6Ng01-013M18.b_62_687

seq1  TTTAATGTAGTAAATCTGAGGCTAGCCTGGGCTACACAGAGACACATTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGTAGTAAATCTGAGGCTAGCCTGGGCTACACAGAGACACATTCA  50

seq1  GAGGCAGAGAGGAAAAGGAAAAGAAGGCAAAAAGACAGGCCAGACATAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGAGAGGAAAAGGAAAAGAAGGCAAAAAGACAGGCCAGACATAGT  100

seq1  AGCAGATCCCTGAAGTCTCACGACTGGGAAGCCAGAGGCAGAGAGATCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATCCCTGAAGTCTCACGACTGGGAAGCCAGAGGCAGAGAGATCTC  150

seq1  TTGGGTTCTCTACCAGTCTGGTCTACATGGCAAATTGCAGGCCAGCCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTCTCTACCAGTCTGGTCTACATGGCAAATTGCAGGCCAGCCAAG  200

seq1  GGCGCAAGAAGAGGCTTCGCTCACAAAGGCAGGGCGAGGGGAGGAGAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGCAAGAAGAGGCTTCGCTCACAAAGGCAGGGCGAGGGGAGGAGAGGA  250

seq1  AGGCAGGTGAGTGAGCAAACAGAGAACTGTTGTACCGTTGTAACAAACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGTGAGTGAGCAAACAGAGAACTGTTGTACCGTTGTAACAAACCA  300

seq1  CAGTCCCTTGGGCTGGGCATGGCGGTACACACCTTTTTTGGAGGTAGGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCCTTGGGCTGGGCATGGCGGTACACACCTTTTTTGGAGGTAGGGG  350

seq1  ATTTATTAGCCAGTTGGATGGTAGCACTTGCCTTTAATTCCAGCACTCGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTAGCCAGTTGGATGGTAGCACTTGCCTTTAATTCCAGCACTCGG  400

seq1  GAGGCAGAGGCAGAGGATCAATGACTTTGAGGCCAGCCTGGTCCACAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGAGGCAGAGGATCAATGACTTTGAGGCCAGCCTGGTCCACAGAG  450

seq1  TTTCAGGATGGCCAAAGCTACACAGGAAAAAAACTTATTTAGCCGGGCGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAGGATGGCCAAAGCTACACAGGAAAAAAACTTATTTAGCCGGGCGT  500

seq1  GGTGGCGCACACCTTTAATCCCAGCCC-TTGCGAGGCAGAGGCAGGCAGA  549
      ||||||||||||||||||||||||||| |||||||||||||||| | |||
seq2  GGTGGCGCACACCTTTAATCCCAGCCCTTTGCGAGGCAGAGGCATGTAGA  550

seq1  TTTCTGAGTTCAAGGCCAGCCT-GGTCTACAGAGTGAG-TTCCAGGACAG  597
      |||||||||||||||||||||| ||||||||||||||| |||||||| ||
seq2  TTTCTGAGTTCAAGGCCAGCCTGGGTCTACAGAGTGAGTTTCCAGGATAG  600

seq1  CCAGGGCTATACAG-AGAAACCCTGT  622
      |||||||||||||| |||||||||||
seq2  CCAGGGCTATACAGAAGAAACCCTGT  626

seq1: chr17_74815017_74816172
seq2: B6Ng01-013M18.g_67_1224 (reverse)

seq1  CACCAT--GTACCCCAT-GAGTGTGTACAGTGGGAAAGTGCTC--CTCCA  45
      ||||||  ||||||| | ||||||||||  |||||| ||||||  |||||
seq2  CACCATAGGTACCCCCTAGAGTGTGTAC-CTGGGAATGTGCTCTTCTCCA  49

seq1  -GGTGAGGCTCTTGTGATCACCGAGTCTGCTGGTCTA-ACGTGAGCCGGG  93
       ||||||  ||||||||||||||||  ||||| || | |||| | |||| 
seq2  GGGTGAGCTTCTTGTGATCACCGAGGTTGCTGTTCAATACGT-AACCGG-  97

seq1  TTTCCGTCCCAGC-ATGCT-GTGTCTTCCAGCAGATAAAGCGCGCCCTTA  141
        | ||||||||| ||||| |||||||| ||||||||||||||| |||||
seq2  --TTCGTCCCAGCAATGCTGGTGTCTTCAAGCAGATAAAGCGCGGCCTTA  145

seq1  GCAGTGAAGTCAGACAGTGTT-CTCTG-AGCT-CACTTAGCAGAAATGGG  188
      |||||| |||||||||||||| ||||| |||| |||||||||||||||||
seq2  GCAGTG-AGTCAGACAGTGTTCCTCTGAAGCTCCACTTAGCAGAAATGGG  194

seq1  TTGGAATTTTATTGCCATGTGATAATTTAGGCTTATACTCGTATATGTTC  238
      | |||||||   ||||||||||| | ||| || |||||||||||||| ||
seq2  TGGGAATTT--ATGCCATGTGATTACTTAAGCCTATACTCGTATATG-TC  241

seq1  CTGTTACATGCAATCATAAATTTATATTTGTTTGTTCTAGTCATGTTTTA  288
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTG-TACATGCAATCATAAATTTATATTTGTTTGTTCTAGTCATGTTTTA  290

seq1  AATGGAAATAATGCTATGTAACTTTTTTTTGGATATTTCATTTCTTTGGG  338
      ||||||||||||||||| |||| |||||||||||||||||||||||||||
seq2  AATGGAAATAATGCTATTTAAC-TTTTTTTGGATATTTCATTTCTTTGGG  339

seq1  TAAATACGCTCTGGTCTGTTTTCTATTGCTTTTT-CCCCTGTCATTGATC  387
      | |||||||||||||||||||||||||||||||| |||||||||||||||
seq2  T-AATACGCTCTGGTCTGTTTTCTATTGCTTTTTCCCCCTGTCATTGATC  388

seq1  ATCGTAGTGACAATAAGGGTATTAAAGTAATATAAACAGGGTTTCCAGAA  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTAGTGACAATAAGGGTATTAAAGTAATATAAACAGGGTTTCCAGAA  438

seq1  TTAGGTGCGTGTACATCCTGCTCTTAGTAATAAAGACAAGGTAATCCTTT  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTGCGTGTACATCCTGCTCTTAGTAATAAAGACAAGGTAATCCTTT  488

seq1  TTGTTTTGTTTTGTTTTGTTTTGTTTTTCGAGACAGGGTTTCTCTGTCTC  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTTTGTTTTGTTTTGTTTTTCGAGACAGGGTTTCTCTGTCTC  538

seq1  TGTGTAACCTTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTC  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTAACCTTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCTC  588

seq1  -AAACCCAGAAACCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGG  636
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCCAGAAACCTGCCTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGG  638

seq1  CGTACGCCACCACCGCCCAGCCTGACAACATAGTCCTTATGTAGTACTAT  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTACGCCACCACCGCCCAGCCTGACAACATAGTCCTTATGTAGTACTAT  688

seq1  ACACTAAATGAAATGTTGCTTTTCTATTTCTTATATACTTTTTGTTTAAT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTAAATGAAATGTTGCTTTTCTATTTCTTATATACTTTTTGTTTAAT  738

seq1  TTGTTGGTTGGTTCTTTTTTACTTCATTTTATTTATTTTTTTATTTCACT  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGGTTGGTTCTTTTTTACTTCATTTTATTTATTTTTTTATTTCACT  788

seq1  TTCTTTATTCATTTATTTATCTTTTTTCTTTTTGAGACAGTGTTTCACTG  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTATTCATTTATTTATCTTTTTTCTTTTTGAGACAGTGTTTCACTG  838

seq1  TGTAGTCCAGGCTGGCCTCTTCTCTCCCACAATGGTGCTAGCATTAAAAC  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTCCAGGCTGGCCTCTTCTCTCCCACAATGGTGCTAGCATTAAAAC  888

seq1  TGTAAGCCCCCTTGCCCGGCCTGCTATTTTATTATATGTGTGTGTGCTTG  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAGCCCCCTTGCCCGGCCTGCTATTTTATTATATGTGTGTGTGCTTG  938

seq1  AGTGTCTGTATGTGTGCCTTGTGCAGGGAGAGTTCTCGGGTGTCAGGAGA  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTGTATGTGTGCCTTGTGCAGGGAGAGTTCTCGGGTGTCAGGAGA  988

seq1  GAACTCAGATATCCTGGAACTGGAATTATAGACAGTTGTGAGTCTCTGTG  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAGATATCCTGGAACTGGAATTATAGACAGTTGTGAGTCTCTGTG  1038

seq1  TGGATGCTGGGTACCAAACTCTGCTCCTCTACAGAGGCAGTAAGCATTCT  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGCTGGGTACCAAACTCTGCTCCTCTACAGAGGCAGTAAGCATTCT  1088

seq1  TTTTTTGTTGTTGGCTTTCGATTTTTTTTTGAGACATGCTTTCATCATTG  1136
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGTTGTTGGCTTTCGATTTTTTTTTGAGACATGCTTTCATCATTG  1138

seq1  CCTTCACTGTCCTGGAATTC  1156
      ||||||||||||||||||||
seq2  CCTTCACTGTCCTGGAATTC  1158