BAC Information

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BAC

Clone NameB6Ng01-014D20
Chromosome17 (Build37)
Map Location 80,020,343 - 80,165,322
singlet/doubletdoublet
Overlap geneAW061290, Cyp1b1, EG668821
Upstream geneVit, Strn, Heatr5b, 2310002B06Rik, EG625054, Eif2ak2, 2410078J06Rik, Cebpz, 2410091C18Rik, Prkcn, LOC675425, Qpct, LOC668812, LOC383277, Cdc42ep3, LOC639964
Downstream geneArl6ip2, LOC625074, Hnrpll, Gpx4-ps, Galm, Sfrs7, 4930560E09Rik, Gemin6, Dhx57, Morn2, Sos1, Cdkl4, F420015M19Rik, Map4k3, LOC100043697
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014D20.bB6Ng01-014D20.g
ACCDH848839DH848840
length1,1411,109
definitionDH848839|Mus musculus domesticus DNA, BAC clone: B6Ng01-014D20, 5' end.DH848840|Mus musculus domesticus DNA, BAC clone: B6Ng01-014D20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,020,343 - 80,021,493)(80,164,197 - 80,165,322)
sequence
gaattcttaacgcatttttccaagctggtgatacttttgcttctgtttct
caagccctttaaagtataactaaagagcaagcttcaggttgactatagag
agatactaaaatcagaattaaagtccgtattgaagtagactcctgtaata
gtcctaataatgcgatttggcttgtgatttgtcacattttttatgacaaa
ggtttaatattgcttttattgactggaaaagtgtctttttttttttcctg
gacagagaaacaaaattcatttccattctccctttttttttttttaattt
tagaaataaaagcccagaatgccccattccacaaacaaagagctaatcct
tggcatcatggcggggactgctgggatcagcttgctggccttctggtacc
acaaggtcctcaagccaaggacgaccatgaacttccctaagcttctttct
ctgggtaagaaatttggttcactaactctgccagaggaaagccacagtgc
gcaaggagcatcggtggtctttcaaaggaggcaactccagatcctggaaa
agctaaacgagctactgaccaacatggaagaactgaaggaggaaatcaga
ttccttaaagagacaattccaaagctggaggaatgtatacaagatgaatt
cggagggaaggtgacagttcataagatcagtcctcagcacagagcgagaa
aaaagaaggggacaaccgttcaacgctcagcaacaagtaacagctcagag
gaggcagaaagtgaagggggtaagtggcctcagtgtttcccatggcgaac
tggttatgtctcacattatttgctcttatatagatagataggcacagtca
tttgctcttgctattaaaagaaaatgaaaggaatgtttgtgttccttttt
tcttttatatatgtaatatttaatatattatatttttaggttaaatataa
tatattaatttactaattgtattattaagttatatatatttccttgtaat
ttatacacatgtacatactataccatatatattattgtatataatgacat
ctgttggaagacaggtattgtttcagaatagataacttattttataattt
gttatttaaataactagtagcatctgtagaagtgggaagac
gaattctgtctaaaaataaggtctagttgtcataagaagtatttcaccta
ctccattaacaataaaatagggctgaattggaaaaagcatgcagcaccct
ttgctccctgtagttttattagaaaaagtccttgcttattttcagctttg
ctggaatctttatttattttttggattccccatcctcacctccacagaat
atggccaccaataggaaagcaggagatactgctaactccaactccctcct
actcagcttctaccagcttaggaccctctacggtttggcctgcaccgtcc
tctcagttcctccaactcttctttggagtgaatagcctactaaccctgat
tgactgcttgcatttggcctgactggagcagtcatgagctgccaaggaat
cagcagggagggactagagggcagcaagagaagcaaaccaacacagattc
actccttaactaaaccagagagcaaagatgccccctgtgtctgcagagtc
atttccaggaggctcagacctaagttctcctgacttcatctgcttggcag
aggtgctgatgacttcctttttaaaggatcgctcaaaggcttgcagaatt
agaagtccccctctgaataacctaagcgcagtctctagttctctgtggtt
gtagagggaactcataattagtttcccattgtcctcctttcctcctagtg
tgggtctagcttggctctgctggctaacatccactgtctcgcccacccgc
cttttctttcctactttctctgtctcgcagccagctactattgctgaatc
ttttacatcagggtttttctccctactcctgaactctgcctcacttgggc
ttcatttccttagtacatttttttttcttttcctccttactttttaaaag
tctgagatggagtgagagagttaaaagggtggaaactgctctctaaagct
atgtccatgcagaataggactagaaaatgagcagtagctgggttccttag
gcctagagcaatatttattgtatgatgaaaaatggcaaatgtgaactttt
aggtggatggcatagcagctgtattctctcttgcctgaaagatgaatatg
gctctggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_80020343_80021493
seq2: B6Ng01-014D20.b_45_1185

seq1  GAATTCTTAACGCATTTTTCCAAGCTGGTGATACTTTTGCTTCTGTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAACGCATTTTTCCAAGCTGGTGATACTTTTGCTTCTGTTTCT  50

seq1  CAAGCCCTTTAAAGTATAACTAAAGAGCAAGCTTCAGGTTGACTATAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCCTTTAAAGTATAACTAAAGAGCAAGCTTCAGGTTGACTATAGAG  100

seq1  AGATACTAAAATCAGAATTAAAGTCCGTATTGAAGTAGACTCCTGTAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACTAAAATCAGAATTAAAGTCCGTATTGAAGTAGACTCCTGTAATA  150

seq1  GTCCTAATAATGCGATTTGGCTTGTGATTTGTCACATTTTTTATGACAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTAATAATGCGATTTGGCTTGTGATTTGTCACATTTTTTATGACAAA  200

seq1  GGTTTAATATTGCTTTTATTGACTGGAAAAGTGTCTTTTTTTTTTTCCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAATATTGCTTTTATTGACTGGAAAAGTGTCTTTTTTTTTTTCCTG  250

seq1  GACAGAGAAACAAAATTCATTTCCATTCTCCCTTTTTTTTTTTTTAATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGAAACAAAATTCATTTCCATTCTCCCTTTTTTTTTTTTTAATTT  300

seq1  TAGAAATAAAAGCCCAGAATGCCCCATTCCACAAACAAAGAGCTAATCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATAAAAGCCCAGAATGCCCCATTCCACAAACAAAGAGCTAATCCT  350

seq1  TGGCATCATGGCGGGGACTGCTGGGATCAGCTTGCTGGCCTTCTGGTACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATCATGGCGGGGACTGCTGGGATCAGCTTGCTGGCCTTCTGGTACC  400

seq1  ACAAGGTCCTCAAGCCAAGGACGACCATGAACTTCCCTAAGCTTCTTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGGTCCTCAAGCCAAGGACGACCATGAACTTCCCTAAGCTTCTTTCT  450

seq1  CTGGGTAAGAAATTTGGTTCACTAACTCTGCCAGAGGAAAGCCACAGTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTAAGAAATTTGGTTCACTAACTCTGCCAGAGGAAAGCCACAGTGC  500

seq1  GCAAGGAGCATCGGTGGTCTTTCAAAGGAGGCAACTCCAGATCCTGGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGAGCATCGGTGGTCTTTCAAAGGAGGCAACTCCAGATCCTGGAAA  550

seq1  AGCTAAACGAGCTACTGACCAACATGGAAGAACTGAAGGAGGAAATCAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAAACGAGCTACTGACCAACATGGAAGAACTGAAGGAGGAAATCAGA  600

seq1  TTCCTTAAAGAGACAATTCCAAAGCTGGAGGAATGTATACAAGATGAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTAAAGAGACAATTCCAAAGCTGGAGGAATGTATACAAGATGAATT  650

seq1  CGGAGGGAAGGTGACAGTTCATAAGATCAGTCCTCAGCACAGAGCGAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGGGAAGGTGACAGTTCATAAGATCAGTCCTCAGCACAGAGCGAGAA  700

seq1  AAAAGAAGGGGACAACCGTTCAACGCTCAGCAACAAGTAACAGCTCAGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGGGGACAACCGTTCAACGCTCAGCAACAAGTAACAGCTCAGAG  750

seq1  GAGGCAGAAAGTGAAGGGGGGTAAGTGGCCTCAGTGTTTCCCATGGCGAA  800
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GAGGCAGAAAGTGAA-GGGGGTAAGTGGCCTCAGTGTTTCCCATGGCGAA  799

seq1  CTGGTTATGTCTCACATTA-TTGCTCTTATATAGATAGATAGGCACAGTC  849
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTGGTTATGTCTCACATTATTTGCTCTTATATAGATAGATAGGCACAGTC  849

seq1  ATTTGCTC-TGCTATTAAAAGAAAATGAAAGGAATGTTTGTGTTCCTTTT  898
      |||||||| ||||||||||||||||||||||||||||||||||||| |||
seq2  ATTTGCTCTTGCTATTAAAAGAAAATGAAAGGAATGTTTGTGTTCC-TTT  898

seq1  TTTCTTTTATATATGTAATATTTTAATATATTATATTTTTAGTTTATATA  948
      |||||||||||||||||||| ||||||||||||||||||||| ||| |||
seq2  TTTCTTTTATATATGTAATA-TTTAATATATTATATTTTTAGGTTAAATA  947

seq1  ATATATAATTATATTTACTATATTGTATTATTAAATTATATATATTTCCT  998
        |||| |||| |||||||| ||||||||||||| |||||||||||||||
seq2  TAATAT-ATTA-ATTTACTA-ATTGTATTATTAAGTTATATATATTTCCT  994

seq1  TGTAATATATACACATGTACATACATATA-CATATATAT--ATGTATATA  1045
      |||||| ||||||||||||||||| |||| |||||||||   ||||||||
seq2  TGTAATTTATACACATGTACATAC-TATACCATATATATTATTGTATATA  1043

seq1  ATGACATCCTGTTGAAAAGACAGTTATTGTTTTCCAGAATAGATAACTTA  1095
      ||||||| ||||||  ||||||| ||||||||  ||||||||||||||||
seq2  ATGACAT-CTGTTG-GAAGACAGGTATTGTTT--CAGAATAGATAACTTA  1089

seq1  TTTTATAATTTGGTTATTATAAATAACTAGTAGCATCCTGTAAGAGTTGG  1145
      ||||||||||| |||||| ||||||||||||||||| |||| |||  |||
seq2  TTTTATAATTT-GTTATT-TAAATAACTAGTAGCAT-CTGT-AGAAGTGG  1135

seq1  GAAGAC  1151
      ||||||
seq2  GAAGAC  1141

seq1: chr17_80164197_80165322
seq2: B6Ng01-014D20.g_70_1178 (reverse)

seq1  CACCAGAGGCACTAATCATCTCTCCAGGCAAG-GAGAATACAGCTTGCTT  49
      |||||||| || || |||||| | |||||||| ||||||||||| |||| 
seq2  CACCAGAGCCA-TATTCATCT-TTCAGGCAAGAGAGAATACAGC-TGCT-  46

seq1  AATGCCATCCACAT-AGAGTTCTACATTTTGCCCATTTTTCATCATTTAA  98
       ||||||||||| | | ||||| ||||||   ||||||||||||||   |
seq2  -ATGCCATCCACCTAAAAGTTC-ACATTT--GCCATTTTTCATCAT---A  89

seq1  CAATAAATATTGCTCTTAGGCCTAAGGAAACCCAAGCTAACTGCTCAATT  148
      ||||||||||||||| |||||||||||||  || |||| ||||||||  |
seq2  CAATAAATATTGCTC-TAGGCCTAAGGAA--CCCAGCT-ACTGCTCA--T  133

seq1  TTTCTAGTTCCTATTTTCTGCAATGGACATAGCTTTAGGAGAGCAGTTTC  198
      ||||||| |||||  |||||| ||||||||||||||| ||||||||||||
seq2  TTTCTAG-TCCTA--TTCTGC-ATGGACATAGCTTTA-GAGAGCAGTTTC  178

seq1  CACCCTTTTAACTCTCTCACTCCATCTCAGACTTTTAAAAAGTAAGGAGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTTTTAACTCTCTCACTCCATCTCAGACTTTTAAAAAGTAAGGAGG  228

seq1  AAAAG-AAAAAAAATGTACTAAGAAAATGAAG-CCAAGTGAGGCAGAGTT  296
      ||||| ||||||||||||||||| |||||||| |||||||||||||||||
seq2  AAAAGAAAAAAAAATGTACTAAGGAAATGAAGCCCAAGTGAGGCAGAGTT  278

seq1  CAGGAGTAGGGAGAAAAACACTGATGTAAAAGATTCAGCAATAGTAGCTG  346
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CAGGAGTAGGGAGAAAAACCCTGATGTAAAAGATTCAGCAATAGTAGCTG  328

seq1  GCTGCGAGACAGAGAAAGTAGGAAAGAAAAGGCGGGTGGGCGAGACAGTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCGAGACAGAGAAAGTAGGAAAGAAAAGGCGGGTGGGCGAGACAGTG  378

seq1  GATGTTAGCCAGCAGAGCCAAGCTAGACCCACACTAGGAGGAAAGGAGGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTAGCCAGCAGAGCCAAGCTAGACCCACACTAGGAGGAAAGGAGGA  428

seq1  CAATGGGAAACTAATTATGAGTT-CCTCTACAACCACAGAGAACTAGAGA  495
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CAATGGGAAACTAATTATGAGTTCCCTCTACAACCACAGAGAACTAGAGA  478

seq1  CTGCGCTTAGGTTATTCAGAGGGGGACTTCTAATTCTGCAAGCCTTTGAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGCTTAGGTTATTCAGAGGGGGACTTCTAATTCTGCAAGCCTTTGAG  528

seq1  CGATCCTTTAAAAAGGAAGTCATCAGCACCTCTGCCAAGCAGATGAAGTC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATCCTTTAAAAAGGAAGTCATCAGCACCTCTGCCAAGCAGATGAAGTC  578

seq1  AGGAGAACTTAGGTCTGAGCCTCCTGGAAATGACTCTGCAGACACAGGGG  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAACTTAGGTCTGAGCCTCCTGGAAATGACTCTGCAGACACAGGGG  628

seq1  GCATCTTTGCTCTCTGGTTTAGTTAAGGAGTGAATCTGTGTTGGTTTGCT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCTTTGCTCTCTGGTTTAGTTAAGGAGTGAATCTGTGTTGGTTTGCT  678

seq1  TCTCTTGCTGCCCTCTAGTCCCTCCCTGCTGATTCCTTGGCAGCTCATGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTGCTGCCCTCTAGTCCCTCCCTGCTGATTCCTTGGCAGCTCATGA  728

seq1  CTGCTCCAGTCAGGCCAAATGCAAGCAGTCAATCAGGGTTAGTAGGCTAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCCAGTCAGGCCAAATGCAAGCAGTCAATCAGGGTTAGTAGGCTAT  778

seq1  TCACTCCAAAGAAGAGTTGGAGGAACTGAGAGGACGGTGCAGGCCAAACC  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCCAAAGAAGAGTTGGAGGAACTGAGAGGACGGTGCAGGCCAAACC  828

seq1  GTAGAGGGTCCTAAGCTGGTAGAAGCTGAGTAGGAGGGAGTTGGAGTTAG  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGGGTCCTAAGCTGGTAGAAGCTGAGTAGGAGGGAGTTGGAGTTAG  878

seq1  CAGTATCTCCTGCTTTCCTATTGGTGGCCATATTCTGTGGAGGTGAGGAT  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTATCTCCTGCTTTCCTATTGGTGGCCATATTCTGTGGAGGTGAGGAT  928

seq1  GGGGAATCCAAAAAATAAATAAAGATTCCAGCAAAGCTGAAAATAAGCAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAATCCAAAAAATAAATAAAGATTCCAGCAAAGCTGAAAATAAGCAA  978

seq1  GGACTTTTTCTAATAAAACTACAGGGAGCAAAGGGTGCTGCATGCTTTTT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTTTTTCTAATAAAACTACAGGGAGCAAAGGGTGCTGCATGCTTTTT  1028

seq1  CCAATTCAGCCCTATTTTATTGTTAATGGAGTAGGTGAAATACTTCTTAT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTCAGCCCTATTTTATTGTTAATGGAGTAGGTGAAATACTTCTTAT  1078

seq1  GACAACTAGACCTTATTTTTAGACAGAATTC  1126
      |||||||||||||||||||||||||||||||
seq2  GACAACTAGACCTTATTTTTAGACAGAATTC  1109