BAC Information

Click to search

BAC

Clone NameB6Ng01-014P13
Chromosome17 (Build37)
Map Location 33,210,986 - 33,242,507
singlet/doubletdoublet
Overlap geneZfp563
Upstream geneLOC435518, Notch3, Pdxk-ps, Abhd9, Brd4, LOC100043434, LOC100043433, Akap8, Akap8l, Wiz, A430107D22Rik, Pglyrp2, 4732474A20Rik, EG208285, Cyp4f16, LOC667178, LOC677156, EG631304, Cyp4f15, LOC623809, 9030612M13Rik, Zfp811, 6030490I01Rik, LOC631266, BC066107, Cyp4f14, Cyp4f13, 6030422M01Rik, Zfp472, C920016K16Rik, 1700065O13Rik, 4921501E09Rik
Downstream geneMorc2b, LOC100038859, LOC100038860, LOC100043474, Zfp422-rs1, Olfr63, LOC100043468, Zfp81, Zfp101, 1700029I08Rik, LOC100042953, Adamts10, Myo1f, Zfp414, Pram1, Hnrpm, March2, Rab11b, Angptl4, Ankrd47, Rps28, Ndufa7, Cd320, LOC100042967, LOC630219, LOC100042970, BC051226, Daxx, Zbtb22, Tapbp, Rgl2, H2-Ke2, Wdr46, B3galt4, Rps18, Vps52, EG630499, LOC100042989, AA388235, H2-K1, LOC654352, Ring1, H2-Ke6, Slc39a7, Rxrb, Col11a2, LOC672505, H2-Pa, H2-Oa
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-014P13.bB6Ng01-014P13.g
ACCDH849366DH849367
length9021,086
definitionDH849366|Mus musculus domesticus DNA, BAC clone: B6Ng01-014P13, 5' end.DH849367|Mus musculus domesticus DNA, BAC clone: B6Ng01-014P13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,241,983 - 33,242,507)(33,210,986 - 33,212,101)
sequence
gaattctctctagcatgggtcttttcatgtattctaagggaaccacaacg
agtgaaggctttcccacactgcttacatatgtagggcttctcaccggtgt
gaatttgctcatgtctctgacagtcacccaaagcaggaaaggctttccca
cactgcttgcatgcatagggcctttctccactgtgaatcctttcatggcg
ccgaagggaactgtacccactgaaagctttcccacactccttacagtcat
agggtttttccctagtatgaatcctttcatggcgctgaagagaactctgt
atagtgaaggctttaccacattccttacatctatagggcttctctccggt
gtgaattcgttcatggatccgaaaggtaccagaagagatgaaacctttcc
cacactgttcacagacatagggtttctcaccgctgtgaattctttcatga
tttcgaagggaagtacgagtagtgacagctttattacacaggttacaaac
atagagtttctctccagtgtgagtccgttcgtgtactcgacaggtacttg
aagaaatgaaacatttgccacagtatttgcatacatagggtttctctcca
ctgtgaattctttcatggcgtggaagtgaactttgaccagtgaaagcttt
cccacaatacttacatacaaagggtttctctccgctgtgaatcctgtcat
gacgtcgaagggaaccacgactagggaaggctttcccacagtggttacat
atgtagggtttctcaccggtatgagttctttcatgtcttcgaaccttact
tgaagaagaaatggctttcccacattgatgacattttatacggtttctca
atggtgtgggtatttccatgtttcagatagcactcaggatacatgaaggt
tt
gaattcctaactgtgttaatgaggaggctgaaaattgagtgatggacttg
ggcttcacaattcagttttgccaacagttaactctcatgtaaacacataa
ctggacaagataggtcacctgatattccctagatcagggctatatatttc
tacatctattcctaactggtacggcccttttcctcactagaaacactcca
ttgctcatgcctcctgctgactgatcttgtcaatgtgcccatcctttctc
tgttgctgtaaaaagatacagtggccaaggcagctcttataaaagaaaaa
tatttactcctgggcttgcttacagttttagaagattagtctattatcat
tatgtcatgaagcagataggtctggtattggtgcaatagctgagagcttc
actttcaggcagcaggcaaagaaatagatactgggcctgatctgggcttt
tgaaactttaaagtctacccccaacaacatacttcctccagtaaggacac
gccctctaacccttctcaaacagtttggataactaattggtgtgttcttc
cctggagacaactatttctcccactctcggccttcctttgttgctatgat
tctttgtctagtgttgaggcctcatgagctttctcccttccatgttagct
tgtctaatggtatcatttcttacatcttatttaagcagtcacactgatga
gaattcatggatgtagcttctctggcgtttctgggaaacacaagtcacag
gaactctcctgttcctcttgctcttcaaaggtgtgacctcctaagcctta
agtgcagttgttgtagatatatcagtttatgcctatatcttaatacgttt
cctctagaagtttcagaggtctgatctcacattaaagttctgtgtgcgca
catgcatgaggatctgcgcatgacctcttgatacacgagcatgtgtatga
aagcagaagacagctttaggtgccatctgaataagtgtcacatctctctg
aaactgtctcccactagctgcatcttgatggctagctgcctgcaatggct
cgagttacttttttttgacgtgcattccaccatgag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_33241983_33242507
seq2: B6Ng01-014P13.b_262_786 (reverse)

seq1  TGGGAAAGCCTTCCCTAGTCGTGGTTCCCTTCGACGTCATGACAGGATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAAGCCTTCCCTAGTCGTGGTTCCCTTCGACGTCATGACAGGATTC  50

seq1  ACAGCGGAGAGAAACCCTTTGTATGTAAGTATTGTGGGAAAGCTTTCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCGGAGAGAAACCCTTTGTATGTAAGTATTGTGGGAAAGCTTTCACT  100

seq1  GGTCAAAGTTCACTTCCACGCCATGAAAGAATTCACAGTGGAGAGAAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCAAAGTTCACTTCCACGCCATGAAAGAATTCACAGTGGAGAGAAACC  150

seq1  CTATGTATGCAAATACTGTGGCAAATGTTTCATTTCTTCAAGTACCTGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTATGCAAATACTGTGGCAAATGTTTCATTTCTTCAAGTACCTGTC  200

seq1  GAGTACACGAACGGACTCACACTGGAGAGAAACTCTATGTTTGTAACCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACACGAACGGACTCACACTGGAGAGAAACTCTATGTTTGTAACCTG  250

seq1  TGTAATAAAGCTGTCACTACTCGTACTTCCCTTCGAAATCATGAAAGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATAAAGCTGTCACTACTCGTACTTCCCTTCGAAATCATGAAAGAAT  300

seq1  TCACAGCGGTGAGAAACCCTATGTCTGTGAACAGTGTGGGAAAGGTTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCGGTGAGAAACCCTATGTCTGTGAACAGTGTGGGAAAGGTTTCA  350

seq1  TCTCTTCTGGTACCTTTCGGATCCATGAACGAATTCACACCGGAGAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCTGGTACCTTTCGGATCCATGAACGAATTCACACCGGAGAGAAG  400

seq1  CCCTATAGATGTAAGGAATGTGGTAAAGCCTTCACTATACAGAGTTCTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTATAGATGTAAGGAATGTGGTAAAGCCTTCACTATACAGAGTTCTCT  450

seq1  TCAGCGCCATGAAAGGATTCATACTAGGGAAAAACCCTATGACTGTAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCGCCATGAAAGGATTCATACTAGGGAAAAACCCTATGACTGTAAGG  500

seq1  AGTGTGGGAAAGCTTTCAGTGGGTA  525
      |||||||||||||||||||||||||
seq2  AGTGTGGGAAAGCTTTCAGTGGGTA  525

seq1: chr17_33210986_33212101
seq2: B6Ng01-014P13.g_68_1153

seq1  GAATTCCTAACTGTGTTAATGAGGAGGCTGAAAATTGAGTGATGGACTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAACTGTGTTAATGAGGAGGCTGAAAATTGAGTGATGGACTTG  50

seq1  GGCTTCACAATTCAGTTTTGCCAACAGTTAACTCTCATGTAAACACATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCACAATTCAGTTTTGCCAACAGTTAACTCTCATGTAAACACATAA  100

seq1  CTGGACAAGATAGGTCACCTGATATTCCCTAGATCAGGGCTATATATTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACAAGATAGGTCACCTGATATTCCCTAGATCAGGGCTATATATTTC  150

seq1  TACATCTATTCCTAACTGGTACGGCCCTTTTCCTCACTAGAAACACTCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATCTATTCCTAACTGGTACGGCCCTTTTCCTCACTAGAAACACTCCA  200

seq1  TTGCTCATGCCTCCTGCTGACTGATCTTGTCAATGTGCCCATCCTTTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCATGCCTCCTGCTGACTGATCTTGTCAATGTGCCCATCCTTTCTC  250

seq1  TGTTGCTGTAAAAAGATACAGTGGCCAAGGCAGCTCTTATAAAAGAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCTGTAAAAAGATACAGTGGCCAAGGCAGCTCTTATAAAAGAAAAA  300

seq1  TATTTACTCCTGGGCTTGCTTACAGTTTTAGAAGATTAGTCTATTATCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACTCCTGGGCTTGCTTACAGTTTTAGAAGATTAGTCTATTATCAT  350

seq1  TATGTCATGAAGCAGATAGGTCTGGTATTGGTGCAATAGCTGAGAGCTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCATGAAGCAGATAGGTCTGGTATTGGTGCAATAGCTGAGAGCTTC  400

seq1  ACTTTCAGGCAGCAGGCAAAGAAATAGATACTGGGCCTGATCTGGGCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCAGGCAGCAGGCAAAGAAATAGATACTGGGCCTGATCTGGGCTTT  450

seq1  TGAAACTTTAAAGTCTACCCCCAACAACATACTTCCTCCAGTAAGGACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAACTTTAAAGTCTACCCCCAACAACATACTTCCTCCAGTAAGGACAC  500

seq1  GCCCTCTAACCCTTCTCAAACAGTTTGGATAACTAATTGGTGTGTTCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTCTAACCCTTCTCAAACAGTTTGGATAACTAATTGGTGTGTTCTTC  550

seq1  CCTGGAGACAACTATTTCTCCCACTCTCGGCCTTCCTTTGTTGCTATGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGACAACTATTTCTCCCACTCTCGGCCTTCCTTTGTTGCTATGAT  600

seq1  TCTTTGTCTAGTGTTGAGGCCTCATGAGCTTTCTCCCTTCCATGTTAGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGTCTAGTGTTGAGGCCTCATGAGCTTTCTCCCTTCCATGTTAGCT  650

seq1  TGTCTAATGGTATCATTTCTTACATCTTATTTAAGCAGTCACACTGATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTAATGGTATCATTTCTTACATCTTATTTAAGCAGTCACACTGATGA  700

seq1  GAATTCATGGATGTAGCTTCTCTGGCGTTTCTGGGAAACACAAGTCACAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGGATGTAGCTTCTCTGGCGTTTCTGGGAAACACAAGTCACAG  750

seq1  GAACTCTCCTGTTCCTCTTGCTCTTCAAAGGTGTGACCTCCTAAGCCTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCTCCTGTTCCTCTTGCTCTTCAAAGGTGTGACCTCCTAAGCCTTA  800

seq1  AGTGCAGTTGTTGTAGATATATCAGTTTATGCCTATATCTTAATACGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  AGTGCAGTTGTTGTAGATATATCAGTTTATGCCTATATCTTAATACG-TT  849

seq1  TCCTCTAGAAGTTTCAGAAGGTCTGATCTCACATTAAAG-TCTGTGTGCG  899
      ||||||||||||||||| ||||||||||||||||||||| ||||||||||
seq2  TCCTCTAGAAGTTTCAG-AGGTCTGATCTCACATTAAAGTTCTGTGTGCG  898

seq1  CACATGCATGAGGATCTGCGCATGA-CTCTTGATACACGAGCATGTGTAT  948
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CACATGCATGAGGATCTGCGCATGACCTCTTGATACACGAGCATGTGTAT  948

seq1  GAAAGCCAGAAGACAGCTTTAGGTGCCATCCTGAAATACAGTGTCCACAT  998
      ||||| ||||||||||||||||||||||| ||| |||| ||||| |||||
seq2  GAAAG-CAGAAGACAGCTTTAGGTGCCAT-CTG-AATA-AGTGT-CACAT  993

seq1  CTCCTCTGAAACTGTCTCCCCCACTAGCTTGCCATTCTTTGATTGGGCTA  1048
      || ||||||||||||||  ||||||||||   |||   |||||  |||||
seq2  CT-CTCTGAAACTGTCT--CCCACTAGCT--GCAT--CTTGAT--GGCTA  1034

seq1  GGCTGGCTTGCCAATGAGCTCCAGAGTCTTACTTTTTTTTTTTGACAGTT  1098
       |||| ||   ||||| |||| ||    ||||   ||||||||||| || 
seq2  -GCTGCCT--GCAATG-GCTCGAG----TTAC---TTTTTTTTGAC-GT-  1071

seq1  GGCATTACACACCATGAG  1116
       |||||   |||||||||
seq2  -GCATT--CCACCATGAG  1086