BAC Information

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BAC

Clone NameB6Ng01-015N08
Chromosome17 (Build37)
Map Location 35,354,618 - 35,586,528
singlet/doubletdoublet
Overlap geneNfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669
Upstream geneH2-Ob, H2-Ab1, H2-Aa, H2-Eb1, H2-Eb2, H2-Ea, Btnl2, LOC100038862, LOC667442, BC051142, EG632126, Btnl5, LOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta
Downstream geneH2-Q10, Pou5f1, Tcf19, Cchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-015N08.bB6Ng01-015N08.g
ACCDH849987DH849988
length1,029897
definitionDH849987|Mus musculus domesticus DNA, BAC clone: B6Ng01-015N08, 5' end.DH849988|Mus musculus domesticus DNA, BAC clone: B6Ng01-015N08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,354,618 - 35,355,649)(35,585,633 - 35,586,528)
sequence
gaattcatctaaggactaagggcagtttttacatggagagacgggatgga
gacggtttattaagttttctggttggttttgcgaagagggctcccagctt
ctatgacccagataggcaagcattgtagcctgtgagcggctctggggcag
ggagaagagccgaggtaaagcctgggagaatggcaggagcagctcctggg
tctcttaagttagttgcaagcccttggccggccactgtgtcctgtctcgg
aacccccagcaagatcacagtgactgaaaaggctgagctcatgttgtaga
gccaggctgggccccacaggacactcccattcttgatcctcacaggtgcc
ccaggtcgccattacagtaaaactcccaattctccgatcccagccttgct
tgcacaggctctcacacacctgtgcttctctgcctggagatgctcagttg
tgtactagcacattccagctcacgctatgttttgtgacttctcagcctcg
gcccaagctctttggtcagccttagggattttcactgtccctggcctcct
gggagcctcctgcctggttcccatgggccctactgtgaaggcagcaattc
atgccttcagtcactgggctataggtatgttccccaaagcagagtttgaa
tcccttggttccgtgatgctcagctgacctgtgccaaacagaagcccaga
tccctttcctgatttaacctgaatccacccccacttcagtccccaggcag
acgtctaatctctagtttatttcctaactcggtttctcaaattgagcccc
aaatcaccccaccctagagatccaactcttgggcccagcttgagggaagg
gacacatttccacagcaactgtttcaacagtcgggtcgccattgagtcaa
ctcttgggatcccggatttcctccctacccccaccatgttggacaggatg
cctgctgcctgcacaaggggtcagatggagccgggcctctggtactcagt
atttttatcggccctaggaattgagagat
gaattcacaacactgcctgcaactggaagggcagggctcacaaggacaac
ttcataaagagatggagcaatggatggatacaggagagaaaacaagacaa
ccttgtatttcaacttttagactctacatcccttaagcagttcactggta
ctgtctaatgtcaagaatgggttagataaccttgttctcagagtgctgaa
cacaatactacagacagatgaccccactgtgtgactaagtgtactgaaag
aaaacagaaagcaaaggggtgtgaaagactcaaatctatagagaaaactt
tttaaaacaaagtatgaaatatacctatatttagggcttaaaataaaggg
agacttaggtgaaggcagaagagctacttactggggcattccattccctg
gagagctggcttcctgctggccaaagaaatcagcagcctttccctttatg
tcagtgtcatttgtcaaaaatgtctctgtgacaccgcaacactgggtgtg
agttgagggtccttgcgcacagagaacgtgtactgtatcagaaaaggggt
ttggggggacctccaatggcttgtaaatttggaaaaactcttcagccact
tttggcttcttcttttattaatctgaaatccttccttttcagctttccct
tcttggtattacaggatttcgtatttgtcactaagaaagtggtctccgtg
gaaaacctgacgggacggtttccatctacctgggtcactttggtaacctg
tgtgttgcagtaattctgtttggagatgaaagaaacttgaacagggaaga
agtcattaggctgcccagggaatgctgaactccaggctgccactcttatt
tttggcatcaatactggcaggcaccactccaacatatttcttcgact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_35354618_35355649
seq2: B6Ng01-015N08.b_47_1075

seq1  GAATTCATCTAAGGACTAAGGGCAGTTTTTACATGGAGAGACGGGATGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTAAGGACTAAGGGCAGTTTTTACATGGAGAGACGGGATGGA  50

seq1  GACGGTTTATTAAGTTTTCTGGTTGGTTTTGCGAAGAGGGCTCCCAGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGGTTTATTAAGTTTTCTGGTTGGTTTTGCGAAGAGGGCTCCCAGCTT  100

seq1  CTATGACCCAGATAGGCAAGCATTGTAGCCTGTGAGCGGCTCTGGGGCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGACCCAGATAGGCAAGCATTGTAGCCTGTGAGCGGCTCTGGGGCAG  150

seq1  GGAGAAGAGCCGAGGTAAAGCCTGGGAGAATGGCAGGAGCAGCTCCTGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAGAGCCGAGGTAAAGCCTGGGAGAATGGCAGGAGCAGCTCCTGGG  200

seq1  TCTCTTAAGTTAGTTGCAAGCCCTTGGCCGGCCACTGTGTCCTGTCTCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTAAGTTAGTTGCAAGCCCTTGGCCGGCCACTGTGTCCTGTCTCGG  250

seq1  AACCCCCAGCAAGATCACAGTGACTGAAAAGGCTGAGCTCATGTTGTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCCCAGCAAGATCACAGTGACTGAAAAGGCTGAGCTCATGTTGTAGA  300

seq1  GCCAGGCTGGGCCCCACAGGACACTCCCATTCTTGATCCTCACAGGTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGCTGGGCCCCACAGGACACTCCCATTCTTGATCCTCACAGGTGCC  350

seq1  CCAGGTCGCCATTACAGTAAAACTCCCAATTCTCCGATCCCAGCCTTGCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTCGCCATTACAGTAAAACTCCCAATTCTCCGATCCCAGCCTTGCT  400

seq1  TGCACAGGCTCTCACACACCTGTGCTTCTCTGCCTGGAGATGCTCAGTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACAGGCTCTCACACACCTGTGCTTCTCTGCCTGGAGATGCTCAGTTG  450

seq1  TGTACTAGCACATTCCAGCTCACGCTATGTTTTGTGACTTCTCAGCCTCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTAGCACATTCCAGCTCACGCTATGTTTTGTGACTTCTCAGCCTCG  500

seq1  GCCCAAGCTCTTTGGTCAGCCTTAGGGATTTTCACTGTCCCTGGCCTCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCAAGCTCTTTGGTCAGCCTTAGGGATTTTCACTGTCCCTGGCCTCCT  550

seq1  GGGAGCCTCCTGCCTGGTTCCCATGGGCCCTACTGTGAAGGCAGCAATTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCCTCCTGCCTGGTTCCCATGGGCCCTACTGTGAAGGCAGCAATTC  600

seq1  ATGCCTTCAGTCACTGGGCTATAGGTATGTTCCCCAAAGCAGAGTTTGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTCAGTCACTGGGCTATAGGTATGTTCCCCAAAGCAGAGTTTGAA  650

seq1  TCCCTTGGTTCCGTGATGCTCAGCTGACCTGTGCCAAACAGAAGCCCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTGGTTCCGTGATGCTCAGCTGACCTGTGCCAAACAGAAGCCCAGA  700

seq1  TCCCTTTCCTGATTTAACCTGAATCCACCCCCACTTCAGTCCCCAGGCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTTCCTGATTTAACCTGAATCCACCCCCACTTCAGTCCCCAGGCAG  750

seq1  ACGTCTAATCTCTAGTTTATTTCCTAACTCGGTTTCTCAAATTGAGCCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCTAATCTCTAGTTTATTTCCTAACTCGGTTTCTCAAATTGAGCCCC  800

seq1  AAATCACCCCACCCTAGAGATCCAACTCTTGGGCCCAGCTTGAGGGAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACCCCACCCTAGAGATCCAACTCTTGGGCCCAGCTTGAGGGAAGG  850

seq1  GACACATTTCCACAGCAACTG-TTCCACAGTCGGGTCGCCATTGAGTCAA  899
      ||||||||||||||||||||| ||| ||||||||||||||||||||||||
seq2  GACACATTTCCACAGCAACTGTTTCAACAGTCGGGTCGCCATTGAGTCAA  900

seq1  CTCTTGGGGATCCCGGATTTTCCTCCCTACCCCCACCATGGTGGACAGGA  949
      ||||| ||||||||||| |||||||||||||||||||||| |||||||||
seq2  CTCTT-GGGATCCCGGA-TTTCCTCCCTACCCCCACCATGTTGGACAGGA  948

seq1  TGCCTGCTGCCTGGCACCAGGGGGTCAGAGGAAGCCGGGGCCTCTGGGAC  999
      |||||||||||| ||| || ||||||||| | |||| |||||||||| ||
seq2  TGCCTGCTGCCT-GCA-CAAGGGGTCAGATGGAGCC-GGGCCTCTGGTAC  995

seq1  TCAGTATTTTTATCGG-CCTAGGAAATGAGAGAT  1032
      |||||||||||||||| |||||||| ||||||||
seq2  TCAGTATTTTTATCGGCCCTAGGAATTGAGAGAT  1029

seq1: chr17_35585633_35586528
seq2: B6Ng01-015N08.g_69_965 (reverse)

seq1  AGTCGGAGAAATATGTTGGAGTGGTGCCTGCCAGTGATTGATGCCAAAAA  50
      ||||| ||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGTCGAAGAAATATGTTGGAGTGGTGCCTGCCAGT-ATTGATGCCAAAAA  49

seq1  TAAGAGTGGCAGCCTGGAGTTCAGCATT-CCTGGGCAGCCTAATGACTTC  99
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TAAGAGTGGCAGCCTGGAGTTCAGCATTCCCTGGGCAGCCTAATGACTTC  99

seq1  TTCCCTGTTCAAGTTTCTTTCATCTCCAAACAGAATTACTGCAACACACA  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTGTTCAAGTTTCTTTCATCTCCAAACAGAATTACTGCAACACACA  149

seq1  GGTTACCAAAGTGACCCAGGTAGATGGAAACCGTCCCGTCAGGTTTTCCA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACCAAAGTGACCCAGGTAGATGGAAACCGTCCCGTCAGGTTTTCCA  199

seq1  CGGAGACCACTTTCTTAGTGACAAATACGAAATCCTGTAATACCAAGAAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGACCACTTTCTTAGTGACAAATACGAAATCCTGTAATACCAAGAAG  249

seq1  GGAAAGCTGAAAAGGAAGGATTTCAGATTAAT-AAAGAAGAAGCCAAAAG  298
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GGAAAGCTGAAAAGGAAGGATTTCAGATTAATAAAAGAAGAAGCCAAAAG  299

seq1  TGGCTGAAGAGTTTTTCCAAATTTACAAGCCATTGGAGGTCCCCCCAAAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGAAGAGTTTTTCCAAATTTACAAGCCATTGGAGGTCCCCCCAAAC  349

seq1  CCCTTTTCTGATACAGTACACGTTCTCTGTGCGCAAGGACCCTCAACTCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTCTGATACAGTACACGTTCTCTGTGCGCAAGGACCCTCAACTCA  399

seq1  CACCCAGTGTTGCGGTGTCACAGAGACATTTTTGACAAATGACACTGACA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAGTGTTGCGGTGTCACAGAGACATTTTTGACAAATGACACTGACA  449

seq1  TAAAGGGAAAGGCTGCTGATTTCTTTGGCCAGCAGGAAGCCAGCTCTCCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGGAAAGGCTGCTGATTTCTTTGGCCAGCAGGAAGCCAGCTCTCCA  499

seq1  GGGAATGGAATGCCCCAGTAAGTAGCTCTTCTGCCTTCACCTAAGTCTCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATGGAATGCCCCAGTAAGTAGCTCTTCTGCCTTCACCTAAGTCTCC  549

seq1  CTTTATTTTAAGCCCTAAATATAGGTATATTTCATACTTTGTTTTAAAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTTAAGCCCTAAATATAGGTATATTTCATACTTTGTTTTAAAAA  599

seq1  GTTTTCTCTATAGATTTGAGTCTTTCACACCCCTTTGCTTTCTGTTTTCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTCTATAGATTTGAGTCTTTCACACCCCTTTGCTTTCTGTTTTCT  649

seq1  TTCAGTACACTTAGTCACACAGTGGGGTCATCTGTCTGTAGTATTGTGTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTACACTTAGTCACACAGTGGGGTCATCTGTCTGTAGTATTGTGTT  699

seq1  CAGCACTCTGAGAACAAGGTTATCTAACCCATTCTTGACATTAGACAGTA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACTCTGAGAACAAGGTTATCTAACCCATTCTTGACATTAGACAGTA  749

seq1  CCAGTGAACTGCTTAAGGGATGTAGAGTCTAAAAGTTGAAATACAAGGTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGAACTGCTTAAGGGATGTAGAGTCTAAAAGTTGAAATACAAGGTT  799

seq1  GTCTTGTTTTCTCTCCTGTATCCATCCATTGCTCCATCTCTTTATGAAGT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGTTTTCTCTCCTGTATCCATCCATTGCTCCATCTCTTTATGAAGT  849

seq1  TGTCCTTGTGAGCCCTGCCCTTCCAGTTGCAGGCAGTGTTGTGAATTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTTGTGAGCCCTGCCCTTCCAGTTGCAGGCAGTGTTGTGAATTC  897