BAC Information

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BAC

Clone NameB6Ng01-016C18
Chromosome17 (Build37)
Map Location 28,922,214 - 29,040,251
singlet/doubletdoublet
Overlap geneBrpf3, Pnpla1, 4930539E08Rik
Upstream geneD17Wsu92e, EG666682, Snrpc, F830021D11Rik, Taf11, Anks1, Tcp11, 4930526A20Rik, Scube3, LOC100042764, Zfp523, Def6, Ppard, 1810013A23Rik, Fance, Rpl10a, Tead3, Tulp1, Fkbp5, 4930511I11Rik, Gm749, Clps, Tmhs, Srpk1, Slc26a8, Mapk14, LOC100043318, Mapk13
Downstream genePxt1, Kctd20, Stk38, Sfrs3, LOC100042815, Cdkn1a, 9830134C10Rik, LOC100043341, Cpne5, Ppil1, BC004004, LOC100043348, Pi16, Mtch1, Fgd2, Pim1, 4933413N12Rik, Tbc1d22b, Rnf8, 1300018I05Rik, Mdga1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016C18.bB6Ng01-016C18.g
ACCDH850220DH850221
length1,115793
definitionDH850220|Mus musculus domesticus DNA, BAC clone: B6Ng01-016C18, 5' end.DH850221|Mus musculus domesticus DNA, BAC clone: B6Ng01-016C18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,039,135 - 29,040,251)(28,922,214 - 28,923,004)
sequence
gaattcaggcggaagatcctggtcctgctccagagtgcagaggacgagag
gggagagcaggtgaggatgccctctgggatgatcctgctcttctggggac
cctcacccctccttccagggacccccacctctctgctgcattctaagctc
cggactggccttcccagacaacactccctagcaccaaaggcctttgcccc
tcctgatccttctaggccatagttcacctttgaccttcttgaggccaggg
aggcctgactcagtttctctctttctccccataggaagctcaagcgcagg
aggcagagaaggccggagaaaacccgaccccagccggcaaggtgaagtcc
caggtgaagaagtctaacctccggagagccttttctctcaggaaacacag
ctccaaggattctaagaaaacagaggcttcagggactccaggctctggca
gcctagaggcccggccacccaagaagcacggcttcctgcccatgtgtgtc
agtggccacagagcttccatctccagcagcccaggtgagcaggcctggcc
ttaccatggtaacttcaagccttgccctctgctttctgctgtgagaagag
tggagaggtgaagatgtcaatttcagcaggacacctaccaaaaaactcag
agttccctttcttaaaaacaaaggcatcaccaggaagtggtggcgcacgc
ctttaatcccagcacttgggaggcagaggcaggtggatctctgtgagttt
gagggcagctctgttctacagagcgggttctaggacagccagagccaaag
gtgttgctagatctctggttgtcagatgtcactagggaacgttaatagag
acacaccaggatttcaaggtgactgcagtagaacgtgaggaccattgctg
tgcaatgatttccctgctcttgtgcagtacctgctgtttagacagtacta
tctcagttaactctgtctctgattcccatttgacaacagagtcaagcgaa
gttggactgactgggccgaggcttgcccatttaaaggggaagtgatcttg
ctaggtgagagccatgggcacgtccatgtgccttcttaactgtgccctgg
tgggaagcagagggc
gaattcccatagacagagcctttgttgtataaaccttgcttcccaattta
aaggtattggttaaataaatgtggctacacccagttactggggaggctag
agataggaggggtttcagttactgggctggggttgcaggtgggaaccttg
aggagagaaagacaggagggagagaggaggagaaagaaggaggccaccat
gagaggagatgggtcatgagcatgtggccagaagtggaccctgaagacag
gctgttggaaagaaacagccaggtgagacttaaaccgcaggtacttgggg
aacgagcgcatctcgggattaatagtctagcatatagaaaaataaattaa
aggtaattcgcccagtaattgtgctaaagctgctttttaaaaagaatcca
taggagtccattattggggggctagcggggtcctattagtaactgagtta
ttatataacaaagttaacacgcacaactcagcgagactctcaaaaaaaat
aatttaaaataagcagatagggttttttttttcctctctaatttatagcc
aaagtagactttgtgtctgcccacccaaggaggagaaatgcttctatttt
ggaactaaattttccagtgtggatatccttgtggtttagtgtcattgtgc
ttgtagctggaacagttcgttaattacaatgctgatccaccccggtctct
atttaacaatggacggtgtgtgtgagtgtgtgtgtgtccttcagattcca
agacacacttttttgtttttttttttttcggtttttttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_29039135_29040251
seq2: B6Ng01-016C18.b_46_1160 (reverse)

seq1  GCCCTCTGCTTCCCCACAGGCCACAGTTTAAGAA-GCACATGGACGTGCC  49
      ||||||||||||||  |||| ||||| ||||||| |||||||||||||||
seq2  GCCCTCTGCTTCCCACCAGGGCACAG-TTAAGAAGGCACATGGACGTGCC  49

seq1  CATGGCTCTCACCTAGCAAGATCACCTCCCCTTTAAATGGGCAAGCCTCG  99
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CATGGCTCTCACCTAGCAAGATCACTTCCCCTTTAAATGGGCAAGCCTCG  99

seq1  GCCCAGTCAGTCCAAACTTCGCCTGACTCTGTTGTCAAATGGGAATCAGA  149
      ||||||||||||| |||||||| |||||||||||||||||||||||||| 
seq2  GCCCAGTCAGTCC-AACTTCGCTTGACTCTGTTGTCAAATGGGAATCAG-  147

seq1  AGACAGAGTTAACTGAGATAGTACTGTCTAAACAGCAGGTACTGCACAAG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGTTAACTGAGATAGTACTGTCTAAACAGCAGGTACTGCACAAG  197

seq1  AGCAGGGAAATCATTGCACAGCAATGGTCCTCACGTTCTACTGCAGTCAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGGAAATCATTGCACAGCAATGGTCCTCACGTTCTACTGCAGTCAC  247

seq1  CTTGAAATCCTGGTGTGTCTCTATTAACGTTCCCTAGTGACATCTGACAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAAATCCTGGTGTGTCTCTATTAACGTTCCCTAGTGACATCTGACAA  297

seq1  CCAGAGATCTAGCAACACCTTTGGCTCTGGCTGTCCTAGAACCCGCTCTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGATCTAGCAACACCTTTGGCTCTGGCTGTCCTAGAACCCGCTCTG  347

seq1  TAGAACAGAGCTGCCCTCAAACTCACAGAGATCCACCTGCCTCTGCCTCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAACAGAGCTGCCCTCAAACTCACAGAGATCCACCTGCCTCTGCCTCC  397

seq1  CAAGTGCTGGGATTAAAGGCGTGCGCCACCACTTCCTGGTGATGCCTTTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGCTGGGATTAAAGGCGTGCGCCACCACTTCCTGGTGATGCCTTTG  447

seq1  TTTTTAAGAAAGGGAACTCTGAGTTTTTTGGTAGGTGTCCTGCTGAAATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAAGAAAGGGAACTCTGAGTTTTTTGGTAGGTGTCCTGCTGAAATT  497

seq1  GACATCTTCACCTCTCCACTCTTCTCACAGCAGAAAGCAGAGGGCAAGGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCTTCACCTCTCCACTCTTCTCACAGCAGAAAGCAGAGGGCAAGGC  547

seq1  TTGAAGTTACCATGGTAAGGCCAGGCCTGCTCACCTGGGCTGCTGGAGAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTTACCATGGTAAGGCCAGGCCTGCTCACCTGGGCTGCTGGAGAT  597

seq1  GGAAGCTCTGTGGCCACTGACACACATGGGCAGGAAGCCGTGCTTCTTGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGCTCTGTGGCCACTGACACACATGGGCAGGAAGCCGTGCTTCTTGG  647

seq1  GTGGCCGGGCCTCTAGGCTGCCAGAGCCTGGAGTCCCTGAAGCCTCTGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCGGGCCTCTAGGCTGCCAGAGCCTGGAGTCCCTGAAGCCTCTGTT  697

seq1  TTCTTAGAATCCTTGGAGCTGTGTTTCCTGAGAGAAAAGGCTCTCCGGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTAGAATCCTTGGAGCTGTGTTTCCTGAGAGAAAAGGCTCTCCGGAG  747

seq1  GTTAGACTTCTTCACCTGGGACTTCACCTTGCCGGCTGGGGTCGGGTTTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGACTTCTTCACCTGGGACTTCACCTTGCCGGCTGGGGTCGGGTTTT  797

seq1  CTCCGGCCTTCTCTGCCTCCTGCGCTTGAGCTTCCTATGGGGAGAAAGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCGGCCTTCTCTGCCTCCTGCGCTTGAGCTTCCTATGGGGAGAAAGAG  847

seq1  AGAAACTGAGTCAGGCCTCCCTGGCCTCAAGAAGGTCAAAGGTGAACTAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACTGAGTCAGGCCTCCCTGGCCTCAAGAAGGTCAAAGGTGAACTAT  897

seq1  GGCCTAGAAGGATCAGGAGGGGCAAAGGCCTTTGGTGCTAGGGAGTGTTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTAGAAGGATCAGGAGGGGCAAAGGCCTTTGGTGCTAGGGAGTGTTG  947

seq1  TCTGGGAAGGCCAGTCCGGAGCTTAGAATGCAGCAGAGAGGTGGGGGTCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAAGGCCAGTCCGGAGCTTAGAATGCAGCAGAGAGGTGGGGGTCC  997

seq1  CTGGAAGGAGGGGTGAGGGTCCCCAGAAGAGCAGGATCATCCCAGAGGGC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGGAGGGGTGAGGGTCCCCAGAAGAGCAGGATCATCCCAGAGGGC  1047

seq1  ATCCTCACCTGCTCTCCCCTCTCGTCCTCTGCACTCTGGAGCAGGACCAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCACCTGCTCTCCCCTCTCGTCCTCTGCACTCTGGAGCAGGACCAG  1097

seq1  GATCTTCCGCCTGAATTC  1117
      ||||||||||||||||||
seq2  GATCTTCCGCCTGAATTC  1115

seq1: chr17_28922214_28923004
seq2: B6Ng01-016C18.g_65_857

seq1  GAATTCCCATAGACAGAGCCTTTGTTGTATAAACCTTGCTTCCCAATTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCATAGACAGAGCCTTTGTTGTATAAACCTTGCTTCCCAATTTA  50

seq1  AAGGTATTGGTTAAATAAATGTGGCTACACCCAGTTACTGGGGAGGCTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTATTGGTTAAATAAATGTGGCTACACCCAGTTACTGGGGAGGCTAG  100

seq1  AGATAGGAGGGGTTTCAGTTACTGGGCTGGGGTTGCAGGTGGGAACCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGGAGGGGTTTCAGTTACTGGGCTGGGGTTGCAGGTGGGAACCTTG  150

seq1  AGGAGAGAAAGACAGGAGGGAGAGAGGAGGAGAAAGAAGGAGGCCACCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGAAAGACAGGAGGGAGAGAGGAGGAGAAAGAAGGAGGCCACCAT  200

seq1  GAGAGGAGATGGGTCATGAGCATGTGGCCAGAAGTGGACCCTGAAGACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAGATGGGTCATGAGCATGTGGCCAGAAGTGGACCCTGAAGACAG  250

seq1  GCTGTTGGAAAGAAACAGCCAGGTGAGACTTAAACCGCAGGTACTTGGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTGGAAAGAAACAGCCAGGTGAGACTTAAACCGCAGGTACTTGGGG  300

seq1  AACGAGCGCATCTCGGGATTAATAGTCTAGCATATAGAAAAATAAATTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGAGCGCATCTCGGGATTAATAGTCTAGCATATAGAAAAATAAATTAA  350

seq1  AGGTAATTCGCCCAGTAATTGTGCTAAAGCTGCTTTTTAAAAAGAATCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAATTCGCCCAGTAATTGTGCTAAAGCTGCTTTTTAAAAAGAATCCA  400

seq1  TAGGAGTCCATTATTGGGGGGCTAGCGGGGTCCTATTAGTAACTGAGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAGTCCATTATTGGGGGGCTAGCGGGGTCCTATTAGTAACTGAGTTA  450

seq1  TTATATAACAAAGTTAACACGCACAACTCAGCGAGACTCTCAAAAAAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATAACAAAGTTAACACGCACAACTCAGCGAGACTCTCAAAAAAAAT  500

seq1  AATTTAAAATAAGCAGATAGGGTTTTTTTTTTCCTCTCTAATTTATAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAAAATAAGCAGATAGGGTTTTTTTTTTCCTCTCTAATTTATAGCC  550

seq1  AAAGTAGACTTTGTGTCTGCCCACCCAAGGAGGAGAAATGCTTCTATTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGACTTTGTGTCTGCCCACCCAAGGAGGAGAAATGCTTCTATTTT  600

seq1  GGAACTAAATTTTCCAGTGTGGATATCCTTGTGGTTTAGTGTCATTGTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTAAATTTTCCAGTGTGGATATCCTTGTGGTTTAGTGTCATTGTGC  650

seq1  TTGTAGCTGGAACAGTTCGTTAATTACAATGCTGATCCACCCCGGTCTCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAGCTGGAACAGTTCGTTAATTACAATGCTGATCCACCCCGGTCTCT  700

seq1  ATTTAACAATGGACGGTGTGTGTGAGTGTGTGTGTGTCCTTCAGATGCC-  749
      |||||||||||||||||||||||||||||||||||||||||||||| || 
seq2  ATTTAACAATGGACGGTGTGTGTGAGTGTGTGTGTGTCCTTCAGATTCCA  750

seq1  AGACACACTTTTTTTGTTTTTTTTTTTTT--GTTTTTTTTTTTT  791
      |||||||| ||||||||||||||||||||  |||||||||||||
seq2  AGACACAC-TTTTTTGTTTTTTTTTTTTTCGGTTTTTTTTTTTT  793