BAC Information

Click to search

BAC

Clone NameB6Ng01-016H06
Chromosome17 (Build37)
Map Location 28,708,716 - 28,819,525
singlet/doubletdoublet
Overlap geneTmhs, Srpk1, Slc26a8
Upstream geneNudt3, Rps10, Pacsin1, Spdef, LOC100042744, D17Wsu92e, EG666682, Snrpc, F830021D11Rik, Taf11, Anks1, Tcp11, 4930526A20Rik, Scube3, LOC100042764, Zfp523, Def6, Ppard, 1810013A23Rik, Fance, Rpl10a, Tead3, Tulp1, Fkbp5, 4930511I11Rik, Gm749, Clps
Downstream geneMapk14, LOC100043318, Mapk13, Brpf3, Pnpla1, 4930539E08Rik, Pxt1, Kctd20, Stk38, Sfrs3, LOC100042815, Cdkn1a, 9830134C10Rik, LOC100043341, Cpne5, Ppil1, BC004004, LOC100043348, Pi16, Mtch1, Fgd2, Pim1, 4933413N12Rik, Tbc1d22b, Rnf8, 1300018I05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-016H06.bB6Ng01-016H06.g
ACCDH850410DH850411
length995700
definitionDH850410|Mus musculus domesticus DNA, BAC clone: B6Ng01-016H06, 5' end.DH850411|Mus musculus domesticus DNA, BAC clone: B6Ng01-016H06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,708,716 - 28,709,708)(28,818,826 - 28,819,525)
sequence
gaattccaagcccagggtctgctcaaggactacctagggtattggtgaag
gccaggaagcaaagttcaattttgcttaggtatttggcaagtcattgctt
ggagacatctataataaaacaatacagaaagaaagcacacagatccattc
gcaaggacaagtttggagcattcataatacaggatgccacagttctagga
gactacagttccaagagactaagtttctgtgaacttttcacctcgggact
gcatccaagtttttggtcctgtcatgcaagtcactactggagtgggtgtg
gcaactttcaaagccaagtatggtagcacgtgactacagttctagtgcaa
aagaggtagagactggagcatctggaggtcaggagcatctgggaaatcag
gagcatctgggaggtcaggagaatccttagttgggtggagagtttgagct
cagtctgcatcccctgagacctatctcaaaagtaaaaagtagggctggtg
agatggctcagaggttaagaggttagccccgttcgccttggcccaaagat
ttatttattatattaaataagtacattgcagctgtcttcagacacaccag
aagagggcatcagatctcattatgggtggttgtgagccaccttgtaggtt
gctggtacttgaactcaggaccttcagaagagcagccagtgctcttaccc
gctgaaccatctcgccagcccaaaataaataaataaataaataaatcttt
aaaaagtaaaaaggtggtgagtggtccaggaatccccgaagttgatttct
gaccacacacgcatgcacactgctggacacaggcacataccacacacgtt
ggtctgttggttttcctgttgggtttttgagttctggatctcagcagggg
cacaaggttggctgggttgagagccagtaatgactgcatccggcctgggt
ggctttctttgtcatgagtctgtgtaacacaggtttgaatgtcag
gaattctctcaggaccctgagtaagggtagaattcccaggtcatatggca
gttctttgtgcagctctgagctgccgtgtgtatgctgggaaccaaactct
gggcctcaggaagaatggccagtgctcttaacactgagccacacctagct
cctgcaaagtcttagctttgatttaaaaaaaaaatcaatctgttttagtc
tgagaattttatagtttggctgttctttttctctctctttgtcagagatt
gatcctggggcctcacccacatgacacatgatctaccactgagctatata
caaatctcttcttactttttatattgaaacaagatcttgctaagttgccc
aggctggtcttaaactcactctatagcctaggctgactttgaacttgtga
tcctcttgcctcagaattccaactaactgagattaacagtcctgagccac
taggcctatcatttttcactcttaaatttaagttaaacttaagtttagta
ccttgtgtaaagtcaggttcaactgtattttttaatatatggatagtcca
cattagccacatggtccattaaagagaatggatactttcccattaaatgt
cacatcaagaatagtatttattgttgggcggtcgtggcgcacgcctttaa
tcccagcacttggaaggcagaggcaggcagatttttgagtttgagaccag

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_28708716_28709708
seq2: B6Ng01-016H06.b_45_1039

seq1  GAATTCCAAGCCCAGGGTCTGCTCAAGGACTACCTAGGGTATTGGTGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGCCCAGGGTCTGCTCAAGGACTACCTAGGGTATTGGTGAAG  50

seq1  GCCAGGAAGCAAAGTTCAATTTTGCTTAGGTATTTGGCAAGTCATTGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGAAGCAAAGTTCAATTTTGCTTAGGTATTTGGCAAGTCATTGCTT  100

seq1  GGAGACATCTATAATAAAACAATACAGAAAGAAAGCACACAGATCCATTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACATCTATAATAAAACAATACAGAAAGAAAGCACACAGATCCATTC  150

seq1  GCAAGGACAAGTTTGGAGCATTCATAATACAGGATGCCACAGTTCTAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGACAAGTTTGGAGCATTCATAATACAGGATGCCACAGTTCTAGGA  200

seq1  GACTACAGTTCCAAGAGACTAAGTTTCTGTGAACTTTTCACCTCGGGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTACAGTTCCAAGAGACTAAGTTTCTGTGAACTTTTCACCTCGGGACT  250

seq1  GCATCCAAGTTTTTGGTCCTGTCATGCAAGTCACTACTGGAGTGGGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCAAGTTTTTGGTCCTGTCATGCAAGTCACTACTGGAGTGGGTGTG  300

seq1  GCAACTTTCAAAGCCAAGTATGGTAGCACGTGACTACAGTTCTAGTGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTTTCAAAGCCAAGTATGGTAGCACGTGACTACAGTTCTAGTGCAA  350

seq1  AAGAGGTAGAGACTGGAGCATCTGGAGGTCAGGAGCATCTGGGAAATCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTAGAGACTGGAGCATCTGGAGGTCAGGAGCATCTGGGAAATCAG  400

seq1  GAGCATCTGGGAGGTCAGGAGAATCCTTAGTTGGGTGGAGAGTTTGAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATCTGGGAGGTCAGGAGAATCCTTAGTTGGGTGGAGAGTTTGAGCT  450

seq1  CAGTCTGCATCCCCTGAGACCTATCTCAAAAGTAAAAAGTAGGGCTGGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGCATCCCCTGAGACCTATCTCAAAAGTAAAAAGTAGGGCTGGTG  500

seq1  AGATGGCTCAGAGGTTAAGAGGTTAGCCCCGTTCGCCTTGGCCCAAAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCTCAGAGGTTAAGAGGTTAGCCCCGTTCGCCTTGGCCCAAAGAT  550

seq1  TTATTTATTATATTAAATAAGTACATTGCAGCTGTCTTCAGACACACCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTATTATATTAAATAAGTACATTGCAGCTGTCTTCAGACACACCAG  600

seq1  AAGAGGGCATCAGATCTCATTATGGGTGGTTGTGAGCCACCTTGTAGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGCATCAGATCTCATTATGGGTGGTTGTGAGCCACCTTGTAGGTT  650

seq1  GCTGGTACTTGAACTCAGGACCTTCAGAAGAGCAGCCAGTGCTCTTACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTACTTGAACTCAGGACCTTCAGAAGAGCAGCCAGTGCTCTTACCC  700

seq1  GCTGAACCATCTCGCCAGCCCAAAATAAATAAATAAATAAATAAATCTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAACCATCTCGCCAGCCCAAAATAAATAAATAAATAAATAAATCTTT  750

seq1  AAAAAGTAAAAAGGTGGTGAGTGGTCCAGGAATCCCCGAAGTTGATTTCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGTAAAAAGGTGGTGAGTGGTCCAGGAATCCCCGAAGTTGATTTCT  800

seq1  GACCACACACGCATGCACACTGCTGGACACAGGCACATACCACACACGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCACACACGCATGCACACTGCTGGACACAGGCACATACCACACACGTT  850

seq1  GGTCTGTTGGTTTTCCTGTTGGG-TTTTGAGTTCTGGATCTCAGCAGGGG  899
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GGTCTGTTGGTTTTCCTGTTGGGTTTTTGAGTTCTGGATCTCAGCAGGGG  900

seq1  CACAAGGTTGGCTGGGTTGAGAGCCAGTAATGACTGCATCCGGCCTTGGT  949
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CACAAGGTTGGCTGGGTTGAGAGCCAGTAATGACTGCATCCGGCCTGGGT  950

seq1  GGCTT--CTTGTCATGAGTCTGTGTAAGCACAGGGTTGAAGGTCAG  993
      |||||   ||||||||||||||||||| |||||| ||||| |||||
seq2  GGCTTTCTTTGTCATGAGTCTGTGTAA-CACAGGTTTGAATGTCAG  995

seq1: chr17_28818826_28819525
seq2: B6Ng01-016H06.g_69_768 (reverse)

seq1  CTGGTCTCAAACTCAAAAATCTGCCTGCCTCTGCCTTCCAAGTGCTGGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTCAAACTCAAAAATCTGCCTGCCTCTGCCTTCCAAGTGCTGGGA  50

seq1  TTAAAGGCGTGCGCCACGACCGCCCAACAATAAATACTATTCTTGATGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGGCGTGCGCCACGACCGCCCAACAATAAATACTATTCTTGATGTG  100

seq1  ACATTTAATGGGAAAGTATCCATTCTCTTTAATGGACCATGTGGCTAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTAATGGGAAAGTATCCATTCTCTTTAATGGACCATGTGGCTAATG  150

seq1  TGGACTATCCATATATTAAAAAATACAGTTGAACCTGACTTTACACAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACTATCCATATATTAAAAAATACAGTTGAACCTGACTTTACACAAGG  200

seq1  TACTAAACTTAAGTTTAACTTAAATTTAAGAGTGAAAAATGATAGGCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAACTTAAGTTTAACTTAAATTTAAGAGTGAAAAATGATAGGCCTA  250

seq1  GTGGCTCAGGACTGTTAATCTCAGTTAGTTGGAATTCTGAGGCAAGAGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTCAGGACTGTTAATCTCAGTTAGTTGGAATTCTGAGGCAAGAGGA  300

seq1  TCACAAGTTCAAAGTCAGCCTAGGCTATAGAGTGAGTTTAAGACCAGCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAGTTCAAAGTCAGCCTAGGCTATAGAGTGAGTTTAAGACCAGCCT  350

seq1  GGGCAACTTAGCAAGATCTTGTTTCAATATAAAAAGTAAGAAGAGATTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAACTTAGCAAGATCTTGTTTCAATATAAAAAGTAAGAAGAGATTTG  400

seq1  TATATAGCTCAGTGGTAGATCATGTGTCATGTGGGTGAGGCCCCAGGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATAGCTCAGTGGTAGATCATGTGTCATGTGGGTGAGGCCCCAGGATC  450

seq1  AATCTCTGACAAAGAGAGAGAAAAAGAACAGCCAAACTATAAAATTCTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTGACAAAGAGAGAGAAAAAGAACAGCCAAACTATAAAATTCTCA  500

seq1  GACTAAAACAGATTGATTTTTTTTTTAAATCAAAGCTAAGACTTTGCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAAAACAGATTGATTTTTTTTTTAAATCAAAGCTAAGACTTTGCAGG  550

seq1  AGCTAGGTGTGGCTCAGTGTTAAGAGCACTGGCCATTCTTCCTGAGGCCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGGTGTGGCTCAGTGTTAAGAGCACTGGCCATTCTTCCTGAGGCCC  600

seq1  AGAGTTTGGTTCCCAGCATACACACGGCAGCTCAGAGCTGCACAAAGAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTTGGTTCCCAGCATACACACGGCAGCTCAGAGCTGCACAAAGAAC  650

seq1  TGCCATATGACCTGGGAATTCTACCCTTACTCAGGGTCCTGAGAGAATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATATGACCTGGGAATTCTACCCTTACTCAGGGTCCTGAGAGAATTC  700