BAC Information

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BAC

Clone NameB6Ng01-017H05
Chromosome17 (Build37)
Map Location 35,653,538 - 35,653,806
singlet/doubletsinglet
Overlap geneTcf19
Upstream geneLOC624681, Btnl7, Notch4, Gpsm3, Pbx2, Ager, Rnf5, Agpat1, Egfl8, Ppt2, Prrt1, Fkbpl, Crebl1, Tnxb, EG632302, C4b, Stk19-ps1, Skiv2l-ps1, LOC100043024, Cyp21a2-ps, Cyp21a1, C4a, Stk19, Dom3z, Skiv2l, Rdbp, Cfb, C2, Zbtb12, Ehmt2, Slc44a4, Neu1, 1110038B12Rik, LOC667548, Hspa1b, Hspa1a, Hspa1l, Lsm2, Vars, D17H6S56E-3, Ng23, Msh5, Clic1, Ddah2, AU023871, G6b, Ly6g6c, Ly6g6d, Ly6g6e, Bat5, Ly6g5c, Ly6g5b, Csnk2b, Bat4, D17H6S53E, Apom, LOC100043621, Bat3, Bat2, Aif1, EG667612, Lst1, Ltb, Tnf, Lta, Nfkbil1, Atp6v1g2, Bat1a, H2-D1, H2-Q1, EG667636, LOC100043066, H2-Q2, EG625285, LOC436493, H2-Q8, EG667662, H2-Q6, H2-Q7, EG667669, H2-Q10, Pou5f1
Downstream geneCchcr1, Psors1c2, Cdsn, LOC674169, 2300002M23Rik, LOC672682, Dpcr1, EG433102, Vars2, Gtf2h4, Ddr1, LOC100043663, Ier3, Flot1, Tubb5, Mdc1, Nrm, 2310014H01Rik, Dhx16, 2310061I04Rik, 2610110G12Rik, Mrps18b, LOC100043673, Ppp1r10, LOC100043674, LOC667766, Abcf1, Prr3, Gna-rs1, H2-T24, H2-T23, H2-T22, EG547347, LOC667782, H2-Bl, EG667792, C920025E04Rik, H2-T10, LOC630294, LOC672718, ENSMUSG00000073403, LOC675325, LOC626268, EG667977, LOC625785, H2-T3, LOC100043127, EG667827, LOC435525, LOC677333, LOC100043134, LOC625881, Rpp21, Trim39, H2-M10.2, H2-M10.1, H2-M10.3, Gm318, LOC100043140, LOC674152, LOC383240, LOC224752, H2-M10.4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-017H05.bB6Ng01-017H05.g
ACCDH851134DH851135
length2691,018
definitionDH851134|Mus musculus domesticus DNA, BAC clone: B6Ng01-017H05, 5' end.DH851135|Mus musculus domesticus DNA, BAC clone: B6Ng01-017H05, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
cgaaggaggagtctgcgcagcgcgcgcgcgcgccttcacccaagccccgc
cttcggggcggcttccttggctgtcaaacctcggcgggagcgcgggacgc
agggtacggaatcccttcctcagtttaccccgcgagcgaaaaaaagaaag
ggtgagatccactttgttacagaattagggacccgtctgcgccgcccttt
gcgggtgacagtggattcacttcccttaggggaactgatccgaagagcgg
gggtgggggggaaagatgg
gaattccacttaagtgactgaatgaacctcagaagagaccttgaactttg
gacttttaacactgttgagactgccatagactatggggactattgaatta
aatatattttacattatgctatgtttaggtatgtcccccataaactcatg
tttgaacaagcctatggtggccagggagtggaatgtgatggtttgcttgg
cccagggagtggcactattagaagatgtggccctgttgcagtaggtgtgt
cactatgggtgtggactataagatcctcatcctcgctgcctggaagtcag
tattctgctagcagccttcagatgaagatgtagaactctcagctctgcct
gctccatgcctgcctggatgctgccatgtttcctgccttgatgataatgg
attgaacctctgaatctataatccaaccccaattaaacattgtcatttat
aagacttgccttggtcatgttgtctgttcacagcagtaaatccctaacta
agacaaccccattctaactcagagaggatgatgggcatcgaagaacctcc
aaaatggagtttgcttcaatgcagcaaagccaggcactagccaaaagctt
gcccttgcttcaactgcagactgcatgctgtcctaacaggggacaagcag
aacacagagcaagctgtaccaagacaagttgggagagtccttcaataatc
ctgcttcataaaaaaacatctgtcatatactgggccagtaccttgaagat
ggatgccccagcactgcagaagaaccttgggtgactgtccagtcagccag
cgatctctgcattcccatagctttgaagctgctttgctctgcacgtcctg
ttttctcagggaatatttatccttctcaggtcactgatggggggaagact
acatagttacagcctcccaggaagcttaaggttgttaggatttaagaaat
ctattaactaggtctagggaagatattttcacgtgataattttcctgtct
ggatacacaggaattaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_35653538_35653806
seq2: B6Ng01-017H05.b_49_317 (reverse)

seq1  CCATCTTTCCCCCCCACCCCCGCTCTTCGGATCAGTTCCCCTAAGGGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTTCCCCCCCACCCCCGCTCTTCGGATCAGTTCCCCTAAGGGAAG  50

seq1  TGAATCCACTGTCACCCGCAAAGGGCGGCGCAGACGGGTCCCTAATTCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCCACTGTCACCCGCAAAGGGCGGCGCAGACGGGTCCCTAATTCTG  100

seq1  TAACAAAGTGGATCTCACCCTTTCTTTTTTTCGCTCGCGGGGTAAACTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAAGTGGATCTCACCCTTTCTTTTTTTCGCTCGCGGGGTAAACTGA  150

seq1  GGAAGGGATTCCGTACCCTGCGTCCCGCGCTCCCGCCGAGGTTTGACAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGGATTCCGTACCCTGCGTCCCGCGCTCCCGCCGAGGTTTGACAGC  200

seq1  CAAGGAAGCCGCCCCGAAGGCGGGGCTTGGGTGAAGGCGCGCGCGCGCGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAGCCGCCCCGAAGGCGGGGCTTGGGTGAAGGCGCGCGCGCGCGC  250

seq1  TGCGCAGACTCCTCCTTCG  269
      |||||||||||||||||||
seq2  TGCGCAGACTCCTCCTTCG  269