BAC Information

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BAC

Clone NameB6Ng01-018B15
Chromosome17 (Build37)
Map Location 58,065,273 - 58,071,801
singlet/doubletdoublet
Overlap geneCntnap5c
Upstream geneMllt1, Asah3, Clpp, Alkbh7, Pspn, Gtf2f1, Khsrp, Slc25a41, Slc25a23, Crb3, Dennd1c, Tubb4, Tnfsf9, Cd70, Tnfsf14, C3, Gpr108, Trip10, LOC668635, Vav1, Emr1, EG224916, LOC674419
Downstream geneLOC620408, EG545216, LOC668648, 2610034M16Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-018B15.bB6Ng01-018B15.g
ACCDH851596DH851597
length1,1181,130
definitionDH851596|Mus musculus domesticus DNA, BAC clone: B6Ng01-018B15, 5' end.DH851597|Mus musculus domesticus DNA, BAC clone: B6Ng01-018B15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(58,065,273 - 58,066,401)(58,071,268 - 58,071,801)
sequence
gaattctctcacaagcctggaactctccatgaagttacattgagtggata
gataactgtacattctccagaaatcacaagacacaagtatcttgactttt
caatgctggctgacatttgaccatgtgagccatggagtagaaatgcatat
tctgaatgtgctgtgcttgatttttccaccaggggtatcactgactttat
atagacatctgaagctgcaatctcttccttcattgctattatcctggtac
ttttgtaataaccatgtcagtagagtttcccatgagtttcagaattatta
cttttatgacctagggtcatttggaagcttgatattgtacccctgtaaat
atctgggacacatgatttactccttctttatggagttttcttttatgaaa
tttaacttcatactatataaaataaacataaacagtaggagatgatattt
tgtacagtcacttgtgtgttaactcacattaaagtatgaggcagtgtcca
tgtgcatttccccttctggattttccatccccaggtgcaatgccagtatg
caatttattgaacaagagttacatttctagaacctcatgaaataagatga
gttcaatctctatgaaactatttattctaatatctttacactcaggatgg
gaaaaaaaacaacaaaaatagaaaaaacacttcctggagagaaggcttaa
ttggtaatcaggaaaacttgaattcagttcctagaacctatatttaaaag
gcaggattgctaaaggtaggcaagcacttaagagcatatactgttattac
acaggactggagttaggttcccagcactcatgttgtacagcttacacctg
tctataattccagctccagaggaccaacactctcttctagcctctatggg
tccaacacacaagtggcacacacacatgcacatgtacacacacagactat
acacacaaactaaaagtcaaagaattctgttttgttgaaagtcagatctc
ttctgtatctatatatttggttgttagctggtggtttttgtgggatgctt
cttgggaatgatgtgtccctgatgtgttttgctactctgggaaacttcct
tcgttaggggccagttca
gaattctatgatcctaatattctaggtctgtctgagttcctgggagtcaa
gctgcctctggaaccctgagaacttgaccaagctcctggaatcctgggat
attggatgtgttagagcacctgggatttgagcctcctctgggtgctgtgg
gactggctggagagtttacacccaaggccaactggcacagataggaagga
accagagccactggtcattcagggttcctgcatccccggaacctgccagt
cctaggtactccagatggtgttggaacagatgttgtgtcctactcacccc
tgattctggccatgctaaagtgcctgggagtggttgtgggactggctgct
gagtttgtgccccaactcatgatctccttacttacttatttattggatgt
taacattacacttgaatatactaggctcaaaaactctttaattctttctt
tttaaaaaattattagatattttctttattttcatttcaaatgttacccc
ctttccaagtttcccctccaaaaatcccctaccccctccctgtgcttccc
aacccatccactcccacttcctcctctaggcattcccctatactggggta
tagaaccttcacaggaccaagggcctctcctcccattgatgaccaactag
gccatcctcagctacatatacagctaaagccacatgtcccaccatgtttt
ctttgattggtggtttagttccaagaagttctgggagtactggttagttc
atattgatgttcctcctatggggcttcagacagacagacaggcagacaga
cagagacagacagagagaccttgcctagatcatctcaagctctgttctct
agttctatgaatcactatagagtaattgaaaacattaccttacagtccgg
caatgttctatcatgttgttaacatagatgcatcacagttcacattggaa
tgatagtaagataaacttattgggttcattatagggaaataatagctttc
accatatttcaattcactgcagaaatgtcttagtactgccctaggcaata
ttcaaccacattccaaactacttgctattattgacctctatctacatcct
tttatatccccctcatctactctttcacac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_58065273_58066401
seq2: B6Ng01-018B15.b_44_1161

seq1  GAATTCTCTCACAAGCCTGGAACTCTCCATGAAGTTACATTGAGTGGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCACAAGCCTGGAACTCTCCATGAAGTTACATTGAGTGGATA  50

seq1  GATAACTGTACATTCTCCAGAAATCACAAGACACAAGTATCTTGACTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAACTGTACATTCTCCAGAAATCACAAGACACAAGTATCTTGACTTTT  100

seq1  CAATGCTGGCTGACATTTGACCATGTGAGCCATGGAGTAGAAATGCATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGCTGGCTGACATTTGACCATGTGAGCCATGGAGTAGAAATGCATAT  150

seq1  TCTGAATGTGCTGTGCTTGATTTTTCCACCAGGGGTATCACTGACTTTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATGTGCTGTGCTTGATTTTTCCACCAGGGGTATCACTGACTTTAT  200

seq1  ATAGACATCTGAAGCTGCAATCTCTTCCTTCATTGCTATTATCCTGGTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACATCTGAAGCTGCAATCTCTTCCTTCATTGCTATTATCCTGGTAC  250

seq1  TTTTGTAATAACCATGTCAGTAGAGTTTCCCATGAGTTTCAGAATTATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTAATAACCATGTCAGTAGAGTTTCCCATGAGTTTCAGAATTATTA  300

seq1  CTTTTATGACCTAGGGTCATTTGGAAGCTTGATATTGTACCCCTGTAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATGACCTAGGGTCATTTGGAAGCTTGATATTGTACCCCTGTAAAT  350

seq1  ATCTGGGACACATGATTTACTCCTTCTTTATGGAGTTTTCTTTTATGAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGACACATGATTTACTCCTTCTTTATGGAGTTTTCTTTTATGAAA  400

seq1  TTTAACTTCATACTATATAAAATAAACATAAACAGTAGGAGATGATATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTTCATACTATATAAAATAAACATAAACAGTAGGAGATGATATTT  450

seq1  TGTACAGTCACTTGTGTGTTAACTCACATTAAAGTATGAGGCAGTGTCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGTCACTTGTGTGTTAACTCACATTAAAGTATGAGGCAGTGTCCA  500

seq1  TGTGCATTTCCCCTTCTGGATTTTCCATCCCCAGGTGCAATGCCAGTATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATTTCCCCTTCTGGATTTTCCATCCCCAGGTGCAATGCCAGTATG  550

seq1  CAATTTATTGAACAAGAGTTACATTTCTAGAACCTCATGAAATAAGATGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTATTGAACAAGAGTTACATTTCTAGAACCTCATGAAATAAGATGA  600

seq1  GTTCAATCTCTATGAAACTATTTATTCTAATATCTTTACACTCAGGATGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAATCTCTATGAAACTATTTATTCTAATATCTTTACACTCAGGATGG  650

seq1  GAAAAAAAACAACAAAAATAGAAAAAACACTTCCTGGAGAGAAGGCTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAAAACAACAAAAATAGAAAAAACACTTCCTGGAGAGAAGGCTTAA  700

seq1  TTGGTAATCAGGAAAACTTGAATTCAGTTCCTAGAACCTATATTTAAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAATCAGGAAAACTTGAATTCAGTTCCTAGAACCTATATTTAAAAG  750

seq1  GCAGGATTGCTAAAGGTAGGCAAGCACTTAAGAGCATATACTGTTATTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGATTGCTAAAGGTAGGCAAGCACTTAAGAGCATATACTGTTATTAC  800

seq1  ACAGGACTGGAGTTAGGTTCCCAGCACTCATGTTGTACAGCTTACACCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGACTGGAGTTAGGTTCCCAGCACTCATGTTGTACAGCTTACACCTG  850

seq1  TCTATAATTCCAGCTCCAGAGGACCAACACTCTCTTCTAGCCTCTATGGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAATTCCAGCTCCAGAGGACCAACACTCTCTTCTAGCCTCTATGGG  900

seq1  TCCAACACACAAGTGGCACACACACATGCACATGTACACACACAGACTAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACACACAAGTGGCACACACACATGCACATGTACACACACAGACTAT  950

seq1  ACACACAAAACTAAAAGTCAAAAGAATTCTGTTTTGTGAAAGGTCAGATC  1000
      |||||| |||||||||||| |||||||||||||||||  || ||||||||
seq2  ACACAC-AAACTAAAAGTC-AAAGAATTCTGTTTTGTTGAAAGTCAGATC  998

seq1  TCTTCTGTATCTATATATTTGGTTGTTAGCTTGGTGGGTTTTGTGGGATT  1050
      |||||||||||||||||||||||||||||| |||||| |||||||||| |
seq2  TCTTCTGTATCTATATATTTGGTTGTTAGC-TGGTGGTTTTTGTGGGA-T  1046

seq1  GCTTCTTTGGGAATGGATGTGTCTCTGATGTGTTTTGCTTACTCTTGGGA  1100
      ||||| |||||||| |||||||| |||||||||||||| ||||| |||||
seq2  GCTTC-TTGGGAAT-GATGTGTCCCTGATGTGTTTTGC-TACTC-TGGGA  1092

seq1  CTCTTCCTTCTGTTAGGGTGCCATGTTCA  1129
        |||||||| ||||||| |||| |||||
seq2  AACTTCCTTC-GTTAGGG-GCCA-GTTCA  1118

seq1: chr17_58071268_58071801
seq2: B6Ng01-018B15.g_676_1195 (reverse)

seq1  GTGTGAAAAGAGTAAGAATGAGGGGGATATAAAAAAGGGATGTAGATAGA  50
      ||||| ||||||||   |||||||||||||||||   |||||||||||||
seq2  GTGTG-AAAGAGTA--GATGAGGGGGATATAAAA---GGATGTAGATAGA  44

seq1  GGTCAAATAATAGCCAAAGTAGTTTTGAATGTGTTTGAAAATAATTGCCT  100
      |||| |||||||||  ||||||||| ||||||| |||||    |||||||
seq2  GGTC-AATAATAGC--AAGTAGTTTGGAATGTGGTTGAA---TATTGCCT  88

seq1  AGGGCAGTACCTAGACATTTCTGCAGTGAATTGAAATATTGGTGAAAGCT  150
      ||||||||||  |||||||||||||||||||||||||| |||||||||||
seq2  AGGGCAGTACTAAGACATTTCTGCAGTGAATTGAAATA-TGGTGAAAGCT  137

seq1  ATTTATTTCCCTATAATGAA-CCAATAAGTTTATTCTTACTATCATTCCA  199
      | |||||||||||||||||| |||||||||||| ||||||||||||||||
seq2  A-TTATTTCCCTATAATGAACCCAATAAGTTTA-TCTTACTATCATTCCA  185

seq1  ATGTGAACTGTGATGCATCTATGTTAACAACATGATAGAACATTGCCGGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAACTGTGATGCATCTATGTTAACAACATGATAGAACATTGCCGGA  235

seq1  CTGTAAGGTAATGTTTTCAATTACTCTATAGTGATTCATAGAACTAGAGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAGGTAATGTTTTCAATTACTCTATAGTGATTCATAGAACTAGAGA  285

seq1  ACAGAGCTTGAGATGATCTAGGCAAGGTCTCTCTGTCTGTCTCTGTCTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGCTTGAGATGATCTAGGCAAGGTCTCTCTGTCTGTCTCTGTCTGT  335

seq1  CTGCCTGTCTGTCTGTCTGAAGCCCCATAGGAGGAACATCAATATGAACT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGTCTGTCTGTCTGAAGCCCCATAGGAGGAACATCAATATGAACT  385

seq1  AACCAGTACTCCCAGAACTTCTTGGAACTAAACCACCAATCAAAGAAAAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGTACTCCCAGAACTTCTTGGAACTAAACCACCAATCAAAGAAAAC  435

seq1  ATGGTGGGACATGTGGCTTTAGCTGTATATGTAGCTGAGGATGGCCTAGT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGGGACATGTGGCTTTAGCTGTATATGTAGCTGAGGATGGCCTAGT  485

seq1  TGGTCATCAATGGGAAGAGAGGCCCTAGGTCCTGT  534
      ||||||||||||||| |||||||||| ||||||||
seq2  TGGTCATCAATGGGAGGAGAGGCCCTTGGTCCTGT  520